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Transcription Machinery - Pseudomonas mandelii
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E OU5_0357 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E OU5_4122 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E OU5_4090 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E OU5_4091 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E OU5_3602 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E OU5_4027 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
E OU5_2266 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E OU5_1650 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E OU5_2014 algU; RNA polymerase sigma factor AlgU K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E OU5_0551 sigma-24 (FecI) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E OU5_1919 sigma-24 (FecI) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E OU5_4957 hypothetical protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E OU5_1330 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E OU5_3279 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E OU5_3989 RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E OU5_5640 sigma-70 region 2 K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E OU5_P0243 ECF subfamily RNA polymerase sigma-24 factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E OU5_3834 hypothetical protein K03089 rpoH; RNA polymerase sigma-32 factor
E OU5_2548 rpoN; RpoN K03092 rpoN; RNA polymerase sigma-54 factor
E OU5_5175 flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E OU5_2157 rapA; ATP-dependent helicase HepA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E OU5_2633 transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
E OU5_4164 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
E OU5_4085 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E OU5_4518 glutathione S-transferase-like protein K03599 sspA; stringent starvation protein A
E OU5_4519 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
E OU5_0053 putative anti-sigma-regulatory factor (Ser/Thr protein kinase) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E OU5_0054 anti-sigma-factor antagonist (STAS) K17762 rsbS; rsbT antagonist protein RsbS
E OU5_0055 anti-sigma-factor antagonist (STAS) K17763 rsbR; rsbT co-antagonist protein RsbR
E OU5_5504 response regulator receiver (CheY) modulated Serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E OU5_2013 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
E OU5_2012 sigma-E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D Transcription elongation factors
E OU5_P0409 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
E OU5_0757 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
E OU5_4383 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
E OU5_2642 transcription elongation factor, cleaves 3' nucleotide of paused mRNA K03624 greA; transcription elongation factor GreA
E OU5_1574 hypothetical protein K04760 greB; transcription elongation factor GreB
E OU5_1674 GreA/GreB family elongation factor K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E OU5_3706 transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024