+F Repair protein KO #

  DNA Repair and Recombination Proteins - Pseudomonas mendocina ymp

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Pmen_1887 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Pmen_1071 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Pmen_1381 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Pmen_3805 methylpurine-DNA glycosylase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Pmen_4259 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Pmen_1398 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Pmen_4111 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Pmen_0934 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_1413 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_3179 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_4378 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Pmen_1887 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Pmen_0834 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Pmen_1071 deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Pmen_1204 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E Pmen_1381 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Pmen_4147 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Pmen_1888 AlkA domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Pmen_3805 methylpurine-DNA glycosylase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Pmen_4259 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Pmen_0015 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Pmen_4197 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Pmen_1398 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Pmen_2436 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Pmen_4384 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Pmen_0899 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E Pmen_3376 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Pmen_0154 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Pmen_3878 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E Pmen_2737 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E Pmen_2374 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E Pmen_4513 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Pmen_0154 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Pmen_3916 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Pmen_3915 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Pmen_3884 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Pmen_4389 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Pmen_1593 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker E Pmen_0633 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Pmen_3314 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E Pmen_3490 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Pmen_3840 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Pmen_3038 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Pmen_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Pmen_3528 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E Pmen_3788 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Pmen_1634 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Pmen_3729 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Pmen_4544 Exonuclease, RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Pmen_2067 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Pmen_4098 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Pmen_2647 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Pmen_4513 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Pmen_3876 single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Pmen_1986 DNA helicase/exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E Pmen_1985 DNA helicase/exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E Pmen_1987 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Pmen_3015 RecA protein K03553 recA; recombination protein RecA E Pmen_0425 recA protein K03553 recA; recombination protein RecA E Pmen_1271 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Pmen_1272 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Pmen_1270 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Pmen_0536 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Pmen_3314 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E Pmen_3538 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Pmen_3542 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Pmen_3015 RecA protein K03553 recA; recombination protein RecA E Pmen_0425 recA protein K03553 recA; recombination protein RecA E Pmen_0756 DNA replication and repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Pmen_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Pmen_4397 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Pmen_3376 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Pmen_1477 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Pmen_2645 recombination protein RecR K06187 recR; recombination protein RecR E Pmen_3626 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Pmen_1313 putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC E Pmen_1271 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Pmen_1272 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Pmen_1270 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E Pmen_3755 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Pmen_3538 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Pmen_3542 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E Pmen_3308 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Pmen_3216 Ku domain protein K10979 ku; DNA end-binding protein Ku E Pmen_3217 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Pmen_1848 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Pmen_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Pmen_1583 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F Pmen_2775 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Pmen_4401 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha F Pmen_2053 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta F Pmen_2651 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Pmen_3376 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Pmen_1477 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Pmen_2645 recombination protein RecR K06187 recR; recombination protein RecR F Pmen_2746 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F Pmen_0453 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F Pmen_0709 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F Pmen_1982 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F Pmen_1855 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F Pmen_3314 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F Pmen_1812 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Pmen_0369 ATP-dependent DNA helicase, RecQ-like protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Pmen_3878 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F Pmen_2737 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Pmen_1726 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D Pmen_3015 RecA protein K03553 recA; recombination protein RecA D Pmen_0425 recA protein K03553 recA; recombination protein RecA D Pmen_1587 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Pmen_3626 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Pmen_3572 DNA damage-inducible DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D Pmen_1936 hypothetical protein K14160 imuA; protein ImuA D Pmen_1935 Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein K14161 imuB; protein ImuB D Pmen_1934 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Pmen_3876 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Pmen_3014 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Pmen_0253 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Pmen_1427 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Pmen_2194 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Pmen_3426 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Pmen_0934 8-oxo-dGTPase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_1413 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_3179 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Pmen_4378 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Pmen_3151 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Pmen_3152 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024