+F Repair protein KO
#
DNA Repair and Recombination Proteins - Parastagonospora nodorum
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SNOG_00104 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SNOG_00291 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D SNOG_00523 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E SNOG_11991 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SNOG_14120 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E SNOG_05954 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SNOG_04460 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E SNOG_10562 SNOG_10561; hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SNOG_15845 hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E SNOG_00377 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F SNOG_10753 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F SNOG_03956 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F SNOG_08975 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F SNOG_14048 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F SNOG_11951 hypothetical protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F SNOG_09531 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
E SNOG_04135 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E SNOG_02751 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E SNOG_06940 SNOG_06939; hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E SNOG_13643 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E SNOG_10141 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E SNOG_05363 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E SNOG_02255 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F SNOG_13514 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F SNOG_06187 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F SNOG_01337 hypothetical protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F SNOG_09105 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F SNOG_16062 SNOG_16061; hypothetical protein K10609 CUL4; cullin 4
F SNOG_08717 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F SNOG_07813 hypothetical protein K15082 RAD7; DNA repair protein RAD7
F SNOG_15379 hypothetical protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F SNOG_11556 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F SNOG_11456 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F SNOG_07533 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F SNOG_04169 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F SNOG_02900 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F SNOG_00252 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F SNOG_04209 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F SNOG_08636 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F SNOG_13762 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F SNOG_08339 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F SNOG_03789 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F SNOG_07223 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F SNOG_09105 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F SNOG_16062 SNOG_16061; hypothetical protein K10609 CUL4; cullin 4
F SNOG_08717 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F SNOG_03683 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F SNOG_08399 hypothetical protein K10841 ERCC6; DNA excision repair protein ERCC-6
F SNOG_09426 hypothetical protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E SNOG_11221 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E SNOG_09475 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E SNOG_14345 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E SNOG_01225 SNOG_01224; hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E SNOG_06960 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E SNOG_08115 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E SNOG_20160 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E SNOG_03503 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E SNOG_09074 hypothetical protein K06634 CCNH; cyclin H
E SNOG_13257 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E SNOG_02875 hypothetical protein K07466 RFA1; replication factor A1
E SNOG_07099 hypothetical protein K10739 RFA2; replication factor A2
E SNOG_10424 hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E SNOG_09214 hypothetical protein K10847 XPA; DNA-repair protein complementing XP-A cells
E SNOG_06717 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E SNOG_07446 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E SNOG_00917 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E SNOG_06940 SNOG_06939; hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E SNOG_04094 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E SNOG_02799 hypothetical protein K03869 CUL3; cullin 3
E SNOG_07262 hypothetical protein K03872 ELOC; elongin-C
E SNOG_15839 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E SNOG_09508 SNOG_09507; hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E SNOG_03496 SNOG_03495; hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E SNOG_00833 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E SNOG_08751 hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E SNOG_06058 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E SNOG_04872 hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E SNOG_10753 hypothetical protein K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E SNOG_03956 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E SNOG_08975 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E SNOG_14048 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E SNOG_02875 hypothetical protein K07466 RFA1; replication factor A1
E SNOG_07099 hypothetical protein K10739 RFA2; replication factor A2
E SNOG_10424 hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E SNOG_07642 SNOG_07641; hypothetical protein K10754 RFC1; replication factor C subunit 1
E SNOG_01804 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E SNOG_16470 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E SNOG_07660 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E SNOG_04135 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E SNOG_14577 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E SNOG_06940 SNOG_06939; hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E SNOG_03055 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E SNOG_14985 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E SNOG_14194 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E SNOG_14985 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E SNOG_14194 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E SNOG_14961 SNOG_14960; hypothetical protein K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E SNOG_14961 SNOG_14960; hypothetical protein K04482 RAD51; DNA repair protein RAD51
E SNOG_01234 hypothetical protein K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E SNOG_05145 hypothetical protein K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E SNOG_03305 hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E SNOG_01979 SNOG_01978; hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
E SNOG_14677 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SNOG_14507 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E SNOG_02875 hypothetical protein K07466 RFA1; replication factor A1
E SNOG_07099 hypothetical protein K10739 RFA2; replication factor A2
E SNOG_10424 hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E SNOG_13851 SNOG_13850; hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E SNOG_07424 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E SNOG_14536 SNOG_14535; hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E SNOG_02107 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E SNOG_12508 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E SNOG_12888 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E SNOG_07135 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E SNOG_14161 hypothetical protein K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E SNOG_11198 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E SNOG_06329 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E SNOG_10329 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E SNOG_11552 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E SNOG_15644 hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1
E SNOG_14515 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E SNOG_04321 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E SNOG_12074 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E SNOG_04697 hypothetical protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E SNOG_13012 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E SNOG_11900 hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E SNOG_14985 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E SNOG_14194 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E SNOG_10525 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E SNOG_11159 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E SNOG_13791 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E SNOG_06846 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E SNOG_10141 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E SNOG_05657 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E SNOG_07501 hypothetical protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E SNOG_14677 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E SNOG_14507 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E SNOG_04619 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E SNOG_14961 SNOG_14960; hypothetical protein K04482 RAD51; DNA repair protein RAD51
E SNOG_04357 hypothetical protein K11137 TELO2; telomere length regulation protein
E SNOG_06829 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E SNOG_06828 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E SNOG_09240 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E SNOG_03055 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D SNOG_14888 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D SNOG_07638 SNOG_07637; hypothetical protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D SNOG_00811 hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D SNOG_09459 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D SNOG_00690 hypothetical protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D SNOG_06548 hypothetical protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D SNOG_10260 hypothetical protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D SNOG_03602 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D SNOG_16456 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D SNOG_07144 hypothetical protein K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D SNOG_07831 hypothetical protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D SNOG_04135 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
D SNOG_12235 hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D SNOG_08369 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D SNOG_01174 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D SNOG_11528 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D SNOG_04300 hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D SNOG_01804 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D SNOG_16470 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D SNOG_07660 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D SNOG_11528 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D SNOG_08111 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D SNOG_08239 hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D SNOG_06118 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D SNOG_04357 hypothetical protein K11137 TELO2; telomere length regulation protein
D SNOG_12803 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D SNOG_16473 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D SNOG_16452 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D SNOG_08350 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D SNOG_10359 SNOG_10357 SNOG_10358; hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D SNOG_05179 hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D SNOG_03701 SNOG_03700; hypothetical protein K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D SNOG_11637 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SNOG_03634 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D SNOG_09600 hypothetical protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D SNOG_11882 hypothetical protein K24664 FKH; forkhead protein FKH
D SNOG_12198 hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D SNOG_07749 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
D SNOG_02883 hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D SNOG_15267 SNOG_15266; hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D SNOG_03317 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D SNOG_15372 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D SNOG_11319 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D SNOG_00484 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D SNOG_15981 hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D SNOG_07089 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D SNOG_01720 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D SNOG_15008 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D SNOG_12648 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SNOG_04137 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SNOG_04815 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D SNOG_10001 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SNOG_00104 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SNOG_00291 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D SNOG_00523 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E SNOG_11991 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SNOG_05322 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E SNOG_05954 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SNOG_10562 SNOG_10561; hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SNOG_00955 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E SNOG_00955 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D SNOG_12648 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SNOG_04137 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024