+F Repair protein KO
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DNA Repair and Recombination Proteins - Quercus suber (cork oak)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111986527 DNA oxidative demethylase ALKBH2-like K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 111986514 DNA oxidative demethylase ALKBH2-like K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 112039464 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 111999462 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 112020893 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 112038359 DNA-3-methyladenine glycosylase isoform X1 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 112021675 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 112006948 uncharacterized protein LOC112006948 isoform X1 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 112010723 methyl-CpG-binding domain protein 4-like protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 112033891 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 111996257 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 112020189 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 111995484 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
F 112011411 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 112015495 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 112021016 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
F 111988029 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
F 111997209 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 111996722 DNA polymerase epsilon catalytic subunit A-like K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 112038614 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 112027084 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 112003142 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 112012131 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 112012118 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111997677 flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 111994202 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 112013250 LOW QUALITY PROTEIN: DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 112031670 tyrosyl-DNA phosphodiesterase 1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 112040136 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 112019678 bifunctional polynucleotide phosphatase/kinase-like K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 112032115 polynucleotide 3'-phosphatase ZDP-like K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 111990336 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 111987540 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 111993037 poly [ADP-ribose] polymerase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 112027591 DNA repair protein RAD4 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 111983334 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
F 112025848 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
F 112025849 ubiquitin receptor RAD23c-like K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 112001674 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111993014 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111993789 cullin-4 K10609 CUL4; cullin 4
F 112007104 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 112006141 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 112039828 uncharacterized protein LOC112039828 K15082 RAD7; DNA repair protein RAD7
F 112039680 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 112022802 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 112005225 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 112038787 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 112007314 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 112033951 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 112038797 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 112011791 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111994726 DNA-directed RNA polymerase V subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111996790 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111991753 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111991635 DNA-directed RNA polymerase V subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 112028277 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 112028278 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111984560 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111984587 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111999619 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 112020245 DNA-directed RNA polymerases I, II, and III subunit RPABC2-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 112004341 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 112033914 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 112036272 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 112012711 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 112023590 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 112007307 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 112034004 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 112024906 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 112017983 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 111991900 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 112038271 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 112001674 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111993014 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111993789 cullin-4 K10609 CUL4; cullin 4
F 112007104 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 112030965 DNA excision repair protein ERCC-8-like K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 112019278 protein CHROMATIN REMODELING 8-like K10841 ERCC6; DNA excision repair protein ERCC-6
F 111996005 protein CHROMATIN REMODELING 8-like isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 112030658 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 112029275 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 112020125 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 111989268 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 111999868 general transcription and DNA repair factor IIH helicase subunit XPB1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 111993898 general transcription and DNA repair factor IIH helicase subunit XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 111985419 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 112012956 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 112032970 general transcription factor IIH subunit 2-like K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 112021196 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 112025177 LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH subunit TFB4-like K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 112009567 general transcription and DNA repair factor IIH subunit TFB4-like K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 111989971 general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 112012212 general transcription and DNA repair factor IIH subunit tfb2-like K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 112038653 general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 112031301 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 111995678 cyclin-H1-1 K06634 CCNH; cyclin H
E 112024154 uncharacterized protein LOC112024154 isoform X1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 112023528 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112020147 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 112017680 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 112017407 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 112025316 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 112010841 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 112025387 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Other NER factors
E 112010386 DNA excision repair protein ERCC-1 isoform X1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 112028632 DNA excision repair protein ERCC-1-like K10849 ERCC1; DNA excision repair protein ERCC-1
E 112037443 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 111986873 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 111994202 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 112033301 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 111996866 cullin-3A-like K03869 CUL3; cullin 3
E 111996885 cullin-3A-like K03869 CUL3; cullin 3
E 111998727 cullin-3B-like K03869 CUL3; cullin 3
E 112001494 cullin-3A-like isoform X1 K03869 CUL3; cullin 3
E 112022555 elongin-C K03872 ELOC; elongin-C
E 111998273 uncharacterized protein LOC111998273 K03873 ELOB; elongin-B
E 112001567 uncharacterized protein LOC112001567 K15077 ELA1; elongin-A
E 112033390 uncharacterized protein LOC112033390 K15077 ELA1; elongin-A
E 112001565 uncharacterized protein LOC112001565 K15077 ELA1; elongin-A
E 112030927 uncharacterized protein LOC112030927 K15077 ELA1; elongin-A
E 111986493 uncharacterized protein LOC111986493 K15077 ELA1; elongin-A
E 111998063 uncharacterized protein LOC111998063 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 112024698 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 111999023 DNA mismatch repair protein MSH3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 112006841 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 112030170 LOW QUALITY PROTEIN: DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 112041116 DNA mismatch repair protein MLH1-like K08734 MLH1; DNA mismatch repair protein MLH1
E 111996357 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 112005523 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 112011411 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 112015495 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 112021016 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
E 111988029 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
E 111997209 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 112023528 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112020147 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 112017680 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 112017407 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 112025316 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 112010841 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 112025387 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 112040745 replication factor C subunit 1 isoform X1 K10754 RFC1; replication factor C subunit 1
E 111999495 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 112038286 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 112040579 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 112035701 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 112003142 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 112012131 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 112012118 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 112013999 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 112038942 exonuclease 1-like K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 112037099 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 112035587 uncharacterized protein LOC112035587 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 111994202 DNA ligase 1 isoform X1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 112040113 WD repeat-containing protein 76 isoform X1 K24755 WDR76; WD repeat-containing protein 76
E 112020288 DNA damage-binding protein CMR1-like K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 111984229 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 112012926 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 112005203 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 112041012 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 112007387 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 111986988 uncharacterized protein LOC111986988 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 111983228 BRISC and BRCA1-A complex member 2 K12173 BRE; BRCA1-A complex subunit BRE
E 111983935 lys-63-specific deubiquitinase BRCC36-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 112023586 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 111999234 DNA topoisomerase 2-binding protein 1-A isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 112006859 BRCT domain-containing protein At4g02110 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 111984229 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 112012926 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA complex
E 111988228 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 112019939 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 112019939 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 111994240 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 112016681 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 111994448 DNA repair protein RAD51 homolog 4 isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 112020890 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 112020891 DNA repair protein XRCC2 homolog K10879 XRCC2; DNA-repair protein XRCC2
E 112025339 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
E 112025342 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 112016351 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 111985641 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 112011739 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112017743 SNF2 domain-containing protein CLASSY 1-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112000670 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112002935 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111986518 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112032205 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112032208 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112032212 protein CHROMATIN REMODELING 35-like isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 112024447 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 112003918 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 112015664 mediator of RNA polymerase II transcription subunit 34-like K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 112005560 mediator of RNA polymerase II transcription subunit 34-like K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 112030700 LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 112008948 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111996696 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 112014047 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 112008948 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111996696 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 112029290 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 112035825 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 112001742 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111988639 uncharacterized protein LOC111988639 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 112023528 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 112020147 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 112017680 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 112017407 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 112025316 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 112010841 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 112025387 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 111996769 serine/threonine-protein phosphatase PP-X isozyme 2-like K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 112031896 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 112029885 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 112032220 serine/threonine-protein phosphatase 4 regulatory subunit 2-A-like K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 112039234 serine/threonine-protein phosphatase 4 regulatory subunit 2-like K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 112007285 serine/threonine-protein phosphatase 4 regulatory subunit 3 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 111995072 AP-5 complex subunit beta-1 isoform X1 K19022 AP5B1; AP-5 complex subunit beta-1
E 112017631 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 111989413 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 111993835 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 112019806 structural maintenance of chromosomes protein 6B-like K22804 SMC6; structural maintenance of chromosomes protein 6
E 112012192 uncharacterized protein LOC112012192 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 111984627 non-structural maintenance of chromosomes element 1 homolog K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 112000294 E3 SUMO-protein ligase MMS21-like K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 112024545 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 112015280 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 112015287 non-structural maintenance of chromosomes element 4 homolog A isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 112025617 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 111991624 crossover junction endonuclease EME1B-like isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 111988953 crossover junction endonuclease MUS81-like K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 112030433 crossover junction endonuclease MUS81 isoform X1 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 112029370 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 112032605 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 112009070 structure-specific endonuclease subunit SLX1 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111989662 uncharacterized protein LOC111989662 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 112025349 flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 112025350 flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111998992 flap endonuclease GEN-like 2 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111985067 uncharacterized protein LOC111985067 K19026 SPG11; spatacsin
E 111998469 uncharacterized protein LOC111998469 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 112030052 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 112022504 protein MRG1-like isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 112022589 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 112015603 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 112005212 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 112009413 zinc finger SWIM domain-containing protein 7 isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 112027609 Werner Syndrome-like exonuclease isoform X1 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 111986206 uncharacterized protein LOC111986206 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 112001858 DNA-dependent metalloprotease WSS1-like K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 112039413 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 112016313 single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 111994183 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 112027820 ATP-dependent DNA helicase 2 subunit KU80 isoform X1 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 111984229 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E 112026514 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 112033145 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 111990336 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 112040136 transcription factor bHLH140 isoform X1 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 112030748 uncharacterized protein LOC112030748 isoform X1 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 112031046 uncharacterized protein LOC112031046 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 112034621 uncharacterized protein LOC112034621 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 112016108 E3 ubiquitin-protein ligase FANCL isoform X1 K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E 112031974 LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase FANCM K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 112000075 protein MHF1 homolog isoform X1 K11511 APITD1; centromere protein S
E 112013878 protein MHF2 homolog K15360 STRA13; centromere protein X
E 112013930 uncharacterized protein LOC112013930 isoform X1 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 112008948 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111996696 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 112029290 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 112035825 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 112001742 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111988639 uncharacterized protein LOC111988639 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 111989263 Fanconi anemia group D2 protein homolog isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 112026491 Fanconi anemia group I protein homolog K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 111988228 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like K08775 BRCA2; breast cancer 2 susceptibility protein
E 112023586 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 112036552 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 112019939 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 112016681 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 111995092 LOW QUALITY PROTEIN: telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 111990950 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 111995110 serine/threonine-protein phosphatase 6 regulatory subunit 2-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 112031119 serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 112037999 telomerase Cajal body protein 1-like K23314 WRAP53; telomerase Cajal body protein 1
E 112033196 telomerase Cajal body protein 1-like K23314 WRAP53; telomerase Cajal body protein 1
E 111991485 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 112040113 WD repeat-containing protein 76 isoform X1 K24755 WDR76; WD repeat-containing protein 76
E 112020288 DNA damage-binding protein CMR1-like K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 111999160 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 112001332 DNA polymerase kappa-like K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 112031133 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 111995684 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
D 112015467 DNA polymerase zeta catalytic subunit-like K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 112009857 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111987594 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111985216 DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 111993891 DNA repair protein RAD5B K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 111986495 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 111984616 ubiquitin-conjugating enzyme E2 variant 1B-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111998689 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 112001949 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 112037141 ubiquitin-conjugating enzyme E2 35-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 112003142 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 112012131 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 112012118 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 112018302 cell cycle checkpoint control protein RAD9A K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 111991950 uncharacterized protein LOC111991950 K10903 HUS1; HUS1 checkpoint protein
D 112025936 uncharacterized protein LOC112025936 K10903 HUS1; HUS1 checkpoint protein
D 112034435 uncharacterized protein LOC112034435 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 112038761 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 111999495 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 112038286 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 112040579 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 112035701 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 112034435 uncharacterized protein LOC112034435 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 112015400 protein timeless homolog isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 111997109 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 111995092 LOW QUALITY PROTEIN: telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 112034689 TELO2-interacting protein 1 homolog isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 112011754 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
D 112025563 uncharacterized protein At2g39910-like K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 111988929 large proline-rich protein BAG6 isoform X1 K23390 BAG6; large proline-rich protein BAG6
D 112041119 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
D 112006374 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 112000780 serine/threonine-protein kinase ATR isoform X1 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 112019333 serine/threonine-protein kinase ATM-like K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 112019642 serine/threonine-protein kinase chk1-like K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D 112027295 14-3-3-like protein A isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 112026333 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111998586 14-3-3-like protein GF14 kappa isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 112005245 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 112033888 14-3-3 protein 7 K06630 YWHAE; 14-3-3 protein epsilon
D 112037131 14-3-3-like protein D isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 112036003 14-3-3 protein 9-like isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 112036004 14-3-3-like protein B isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 112004785 wee1-like protein kinase isoform X1 K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 112012733 LOW QUALITY PROTEIN: uncharacterized protein LOC112012733 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 112029840 serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 112027233 serine/threonine-protein kinase Nek2 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 112008286 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 112019109 serine/threonine-protein kinase Nek6-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111988205 serine/threonine-protein kinase Nek2-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111991103 protein downstream neighbor of son homolog isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 112032988 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 112001366 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111985142 LOW QUALITY PROTEIN: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 112004148 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111994600 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111994601 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111999157 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 112007742 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111989350 replication stress response regulator SDE2 isoform X1 K25059 SDE2; replication stress response regulator SDE2
D 112022609 LOW QUALITY PROTEIN: protein DECREASED SIZE EXCLUSION LIMIT 1-like K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 112014134 helicase and polymerase-containing protein TEBICHI-like K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 112023502 myb-binding protein 1A-like protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 111994508 DNA-directed primase/polymerase protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 112009036 5' exonuclease Apollo-like isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 112027414 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 112015747 LOW QUALITY PROTEIN: protein artemis-like K15340 DCLRE1A; DNA cross-link repair 1A protein
D 112036132 uncharacterized protein LOC112036132 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111984565 DNA cross-link repair protein SNM1-like K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111984578 DNA cross-link repair protein SNM1-like K15340 DCLRE1A; DNA cross-link repair 1A protein
D 112002680 5' exonuclease Apollo-like K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 112004458 exonuclease V, chloroplastic-like K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 112038971 exonuclease V, chloroplastic-like K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 112038980 exonuclease V, chloroplastic-like K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 111998460 endonuclease V isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 112034495 endonuclease 1-like isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 112023690 endonuclease 4-like isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 111992530 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 112023689 endonuclease 1-like isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 112035020 switch 2 isoform X1 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 112012915 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 111985670 cell division cycle 5-like protein isoform X1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 112030776 pre-mRNA-splicing factor SPF27 homolog isoform X1 K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 112013191 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 112040653 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111994520 geranyl diphosphate phosphohydrolase-like isoform X1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 112026968 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 112041182 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 112027508 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 112019558 ribonucleoside-diphosphate reductase large chain-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 112005137 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 112006271 ribonucleoside-diphosphate reductase small chain A-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111999462 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 112020893 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 111996222 putative DNA-3-methyladenine glycosylase YfjP isoform X1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111999848 uncharacterized protein LOC111999848 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111998840 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111999576 uncharacterized protein LOC111999576 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 112038359 DNA-3-methyladenine glycosylase isoform X1 K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 112021675 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111984745 uncharacterized protein LOC111984745 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 112021238 uncharacterized protein LOC112021238 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111996832 uncharacterized protein LOC111996832 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 112013834 uncharacterized protein LOC112013834 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 112024251 uncharacterized protein LOC112024251 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111986419 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 111996257 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 112020189 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 111995484 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 111992152 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E 111988765 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 111998879 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 111998879 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 111989695 uncharacterized protein LOC111989695 isoform X1 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 111996966 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
E 111991818 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 112027455 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 112025962 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 112027455 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 112025962 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 112023714 uncharacterized protein LOC112023714 isoform X1 K04485 radA; DNA repair protein RadA/Sms
E 112038484 ATP-dependent DNA helicase homolog RECG, chloroplastic-like isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E 112022249 ATP-dependent DNA helicase homolog RECG, chloroplastic-like K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E 112022273 ATP-dependent DNA helicase homolog RECG, chloroplastic-like K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 111992684 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 112026485 DNA gyrase subunit B, chloroplastic/mitochondrial-like K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F 112027925 DNA gyrase subunit B, chloroplastic/mitochondrial-like K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 112007262 uncharacterized protein LOC112007262 isoform X1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 112027455 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 112025962 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D 111996966 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
D 111991818 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 112040653 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111994520 geranyl diphosphate phosphohydrolase-like isoform X1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 112026968 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 112041182 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024