+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhodobacter capsulatus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RCAP_rcc02958 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E RCAP_rcc00226 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RCAP_rcc02487 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RCAP_rcc00217 nudG; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RCAP_rcc00186 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RCAP_rcp00025 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RCAP_rcc00455 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RCAP_rcc02489 ada; methylated-DNA--[protein]-cysteine S-methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RCAP_rcc02958 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RCAP_rcc00703 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D RCAP_rcc00225 alkB; alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E RCAP_rcc00401 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RCAP_rcc02193 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RCAP_rcc00226 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RCAP_rcc03532 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RCAP_rcc02487 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RCAP_rcc03335 xthA2; exodeoxyribonuclease III-2 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RCAP_rcc02429 xthA1; exodeoxyribonuclease III-1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E RCAP_rcc03063 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RCAP_rcc01664 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RCAP_rcc02480 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RCAP_rcc01558 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E RCAP_rcc01384 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E RCAP_rcc00393 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E RCAP_rcp00092 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RCAP_rcc01491 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RCAP_rcc02480 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E RCAP_rcc01664 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RCAP_rcc00291 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RCAP_rcc00292 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RCAP_rcc00326 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RCAP_rcc03318 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RCAP_rcc01810 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RCAP_rcc03495 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RCAP_rcc00266 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RCAP_rcc02392 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RCAP_rcc03460 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E RCAP_rcc00793 dnaE1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RCAP_rcc00002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RCAP_rcc02696 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E RCAP_rcc00255 polB; DNA polymerase II K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RCAP_rcc01250 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RCAP_rcc02864 PAS domain/exonuclease domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RCAP_rcc02121 PAS domain/exonuclease domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RCAP_rcc00070 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RCAP_rcc01348 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RCAP_rcc01280 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RCAP_rcc02757 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RCAP_rcc01664 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RCAP_rcp00092 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RCAP_rcc01491 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RCAP_rcc01805 ssb1; single-stranded DNA-binding protein-1 K03111 ssb; single-strand DNA-binding protein E RCAP_rcp00014 ssb2; single-stranded DNA-binding protein-2 K03111 ssb; single-strand DNA-binding protein E RCAP_rcc02003 dam; site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RCAP_rcc01751 recA; RecA protein K03553 recA; recombination protein RecA E RCAP_rcc03217 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E RCAP_rcc03218 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RCAP_rcc03216 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RCAP_rcc03211 priA; primosomal protein N` K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E RCAP_rcc02134 sbcC; exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E RCAP_rcc02133 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E RCAP_rcc01751 recA; RecA protein K03553 recA; recombination protein RecA E RCAP_rcc01571 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E RCAP_rcc00003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E RCAP_rcc01665 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RCAP_rcc03063 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RCAP_rcc03308 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E RCAP_rcc02759 recR; recombination protein RecR K06187 recR; recombination protein RecR E RCAP_rcc00829 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E RCAP_rcc03217 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E RCAP_rcc03218 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RCAP_rcc03216 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E RCAP_rcc00037 UvrD/REP helicase family protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E RCAP_rcc01290 UvrD/REP helicase family protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E RCAP_rcc00038 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] E RCAP_rcc01289 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E RCAP_rcc01276 CRISPR-associated protein, reverse transcriptase family/Cas1 family K15342 cas1; CRISP-associated protein Cas1 E RCAP_rcc01305 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E RCAP_rcc02134 sbcC; exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50 E RCAP_rcc02133 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 E RCAP_rcc01867 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RCAP_rcc01965 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RCAP_rcc00004 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RCAP_rcc03100 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RCAP_rcc00996 hup2; DNA-binding protein HU-2 K03530 hupB; DNA-binding protein HU-beta F RCAP_rcc00249 hup1; DNA-binding protein HU-1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RCAP_rcc03063 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RCAP_rcc03308 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F RCAP_rcc02759 recR; recombination protein RecR K06187 recR; recombination protein RecR F RCAP_rcc01664 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F RCAP_rcc01912 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F RCAP_rcc01126 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F RCAP_rcc03453 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RCAP_rcc01558 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F RCAP_rcc01384 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F RCAP_rcc00046 hvrA; trans-acting regulatory protein HvrA K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RCAP_rcc03407 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D RCAP_rcc01751 recA; RecA protein K03553 recA; recombination protein RecA D RCAP_rcc02361 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D RCAP_rcc00829 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RCAP_rcc00140 lipoprotein, putative K14160 imuA; protein ImuA D RCAP_rcc00139 nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB D RCAP_rcc00138 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RCAP_rcc01805 ssb1; single-stranded DNA-binding protein-1 K03111 ssb; single-strand DNA-binding protein D RCAP_rcp00014 ssb2; single-stranded DNA-binding protein-2 K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D RCAP_rcc00217 nudG; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RCAP_rcc00186 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RCAP_rcp00025 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RCAP_rcc00455 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RCAP_rcc01462 nrdJ2; ribonucleoside-diphosphate reductase NrdJ-2 (adenosylcobalamin-dependen) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RCAP_rcc00600 nrdJ1; ribonucleoside-diphosphate reductase NrdJ-1 (adenosylcobalamin-dependen) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024