+F Repair protein KO
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DNA Repair and Recombination Proteins - Rhodobacter capsulatus
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RCAP_rcc02958 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E RCAP_rcc00226 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RCAP_rcc02487 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D RCAP_rcc00217 nudG; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCAP_rcc00186 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCAP_rcp00025 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCAP_rcc00455 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RCAP_rcc02489 ada; methylated-DNA--[protein]-cysteine S-methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RCAP_rcc02958 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RCAP_rcc00703 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D RCAP_rcc00225 alkB; alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E RCAP_rcc00401 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RCAP_rcc02193 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RCAP_rcc00226 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RCAP_rcc03532 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E RCAP_rcc02487 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E RCAP_rcc03335 xthA2; exodeoxyribonuclease III-2 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RCAP_rcc02429 xthA1; exodeoxyribonuclease III-1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E RCAP_rcc03063 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E RCAP_rcc01664 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E RCAP_rcc02480 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E RCAP_rcc01558 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E RCAP_rcc01384 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E RCAP_rcc00393 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E RCAP_rcp00092 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RCAP_rcc01491 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RCAP_rcc02480 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E RCAP_rcc01664 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F RCAP_rcc00291 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F RCAP_rcc00292 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F RCAP_rcc00326 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F RCAP_rcc03318 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F RCAP_rcc01810 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E RCAP_rcc03495 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E RCAP_rcc00266 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E RCAP_rcc02392 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E RCAP_rcc03460 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E RCAP_rcc00793 dnaE1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RCAP_rcc00002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E RCAP_rcc02696 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E RCAP_rcc00255 polB; DNA polymerase II K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E RCAP_rcc01250 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E RCAP_rcc02864 PAS domain/exonuclease domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RCAP_rcc02121 PAS domain/exonuclease domain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RCAP_rcc00070 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RCAP_rcc01348 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RCAP_rcc01280 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RCAP_rcc02757 dnaX; DNA polymerase III, gamma/tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E RCAP_rcc01664 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E RCAP_rcp00092 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RCAP_rcc01491 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RCAP_rcc01805 ssb1; single-stranded DNA-binding protein-1 K03111 ssb; single-strand DNA-binding protein
E RCAP_rcp00014 ssb2; single-stranded DNA-binding protein-2 K03111 ssb; single-strand DNA-binding protein
E RCAP_rcc02003 dam; site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E RCAP_rcc01751 recA; RecA protein K03553 recA; recombination protein RecA
E RCAP_rcc03217 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E RCAP_rcc03218 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RCAP_rcc03216 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E RCAP_rcc03211 priA; primosomal protein N` K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E RCAP_rcc02134 sbcC; exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50
E RCAP_rcc02133 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E RCAP_rcc01751 recA; RecA protein K03553 recA; recombination protein RecA
E RCAP_rcc01571 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E RCAP_rcc00003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E RCAP_rcc01665 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E RCAP_rcc03063 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E RCAP_rcc03308 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E RCAP_rcc02759 recR; recombination protein RecR K06187 recR; recombination protein RecR
E RCAP_rcc00829 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E RCAP_rcc03217 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E RCAP_rcc03218 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RCAP_rcc03216 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E RCAP_rcc00037 UvrD/REP helicase family protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E RCAP_rcc01290 UvrD/REP helicase family protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E RCAP_rcc00038 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
E RCAP_rcc01289 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E RCAP_rcc01276 CRISPR-associated protein, reverse transcriptase family/Cas1 family K15342 cas1; CRISP-associated protein Cas1
E RCAP_rcc01305 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E RCAP_rcc02134 sbcC; exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50
E RCAP_rcc02133 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
E RCAP_rcc01867 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F RCAP_rcc01965 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F RCAP_rcc00004 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F RCAP_rcc03100 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F RCAP_rcc00996 hup2; DNA-binding protein HU-2 K03530 hupB; DNA-binding protein HU-beta
F RCAP_rcc00249 hup1; DNA-binding protein HU-1 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F RCAP_rcc03063 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F RCAP_rcc03308 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F RCAP_rcc02759 recR; recombination protein RecR K06187 recR; recombination protein RecR
F RCAP_rcc01664 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F RCAP_rcc01912 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F RCAP_rcc01126 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F RCAP_rcc03453 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F RCAP_rcc01558 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F RCAP_rcc01384 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
F RCAP_rcc00046 hvrA; trans-acting regulatory protein HvrA K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D RCAP_rcc03407 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D RCAP_rcc01751 recA; RecA protein K03553 recA; recombination protein RecA
D RCAP_rcc02361 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D RCAP_rcc00829 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RCAP_rcc00140 lipoprotein, putative K14160 imuA; protein ImuA
D RCAP_rcc00139 nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB
D RCAP_rcc00138 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RCAP_rcc01805 ssb1; single-stranded DNA-binding protein-1 K03111 ssb; single-strand DNA-binding protein
D RCAP_rcp00014 ssb2; single-stranded DNA-binding protein-2 K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D RCAP_rcc00217 nudG; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCAP_rcc00186 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCAP_rcp00025 hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RCAP_rcc00455 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RCAP_rcc01462 nrdJ2; ribonucleoside-diphosphate reductase NrdJ-2 (adenosylcobalamin-dependen) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RCAP_rcc00600 nrdJ1; ribonucleoside-diphosphate reductase NrdJ-1 (adenosylcobalamin-dependen) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024