+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhizobium leguminosarum bv. trifolii CB782

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RLEG12_32770 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RLEG12_18365 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E RLEG12_26205 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RLEG12_26800 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RLEG12_14595 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RLEG12_28580 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RLEG12_29105 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RLEG12_20930 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RLEG12_30085 hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RLEG12_33105 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RLEG12_32770 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RLEG12_11655 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RLEG12_28570 6-O-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RLEG12_18365 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RLEG12_31470 dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E RLEG12_26205 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RLEG12_24780 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RLEG12_16030 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RLEG12_03030 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RLEG12_29200 DNA-3-methyladenine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RLEG12_26800 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RLEG12_14595 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RLEG12_13675 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E RLEG12_33225 5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RLEG12_28580 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RLEG12_18055 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RLEG12_30350 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RLEG12_18855 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E RLEG12_19195 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RLEG12_24015 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RLEG12_32090 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RLEG12_20035 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E RLEG12_22565 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E RLEG12_16775 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E RLEG12_12475 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RLEG12_23930 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RLEG12_32090 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E RLEG12_24015 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RLEG12_17730 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RLEG12_17735 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RLEG12_17890 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RLEG12_16330 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RLEG12_19970 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RLEG12_11480 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RLEG12_13855 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RLEG12_32720 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RLEG12_14200 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E RLEG12_17500 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RLEG12_32945 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RLEG12_16695 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E RLEG12_31235 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RLEG12_20305 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RLEG12_24000 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RLEG12_02085 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RLEG12_31300 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RLEG12_31950 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RLEG12_24015 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RLEG12_12475 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RLEG12_23930 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RLEG12_20040 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RLEG12_21215 recombinase RecA K03553 recA; recombination protein RecA E RLEG12_27595 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E RLEG12_27600 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RLEG12_27580 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RLEG12_29725 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E RLEG12_21215 recombinase RecA K03553 recA; recombination protein RecA E RLEG12_16560 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E RLEG12_32025 recombinase RecF K03629 recF; DNA replication and repair protein RecF E RLEG12_19960 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RLEG12_19195 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RLEG12_16380 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E RLEG12_31930 recombinase RecR K06187 recR; recombination protein RecR E RLEG12_24025 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E RLEG12_27595 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E RLEG12_27600 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RLEG12_27580 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E RLEG12_31405 ATP-dependent DNA helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E RLEG12_31410 exonuclease RecB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E RLEG12_15440 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E RLEG12_12730 DNA repair protein K10979 ku; DNA end-binding protein Ku E RLEG12_12735 DNA helicase K10979 ku; DNA end-binding protein Ku E RLEG12_09170 DNA helicase K10979 ku; DNA end-binding protein Ku E RLEG12_09175 DNA repair protein K10979 ku; DNA end-binding protein Ku E RLEG12_02405 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RLEG12_18745 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RLEG12_29475 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RLEG12_02295 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RLEG12_03070 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RLEG12_20050 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RLEG12_31335 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RLEG12_17560 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F RLEG12_03075 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RLEG12_17315 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RLEG12_19195 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RLEG12_16380 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F RLEG12_31930 recombinase RecR K06187 recR; recombination protein RecR F RLEG12_24015 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F RLEG12_17040 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F RLEG12_11535 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F RLEG12_24710 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RLEG12_20035 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F RLEG12_22565 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RLEG12_17510 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D RLEG12_09525 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D RLEG12_21215 recombinase RecA K03553 recA; recombination protein RecA D RLEG12_19470 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D RLEG12_24025 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RLEG12_09215 hypothetical protein K14160 imuA; protein ImuA D RLEG12_31045 hypothetical protein K14160 imuA; protein ImuA D RLEG12_09220 nucleotidyltransferase K14161 imuB; protein ImuB D RLEG12_31040 DNA-repair protein K14161 imuB; protein ImuB D RLEG12_09225 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RLEG12_31035 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RLEG12_20040 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RLEG12_32600 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D RLEG12_12340 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D RLEG12_29105 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RLEG12_20930 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RLEG12_30085 hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RLEG12_33105 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RLEG12_28805 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RLEG12_18205 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RLEG12_28800 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024