+F Repair protein KO
#
DNA Repair and Recombination Proteins - Rhizobium phaseoli
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AMC79_CH00326 methylated-DNA--protein-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AMC79_CH01912 deoxyribodipyrimidine photo-lyase protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AMC79_CH03406 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AMC79_CH03518 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E AMC79_CH01025 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AMC79_CH03861 endonuclease III family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D AMC79_CH03968 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMC79_CH02405 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMC79_CH04137 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMC79_PD00033 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMC79_CH00371 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AMC79_CH00326 methylated-DNA--protein-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AMC79_CH03859 methylated-DNA--protein-cysteine S-methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AMC79_CH00467 methylated-DNA--protein-cysteine S-methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AMC79_CH01912 deoxyribodipyrimidine photo-lyase protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D AMC79_CH00041 alkB; DNA oxidative demethylase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E AMC79_CH03406 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AMC79_CH03134 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AMC79_CH01353 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AMC79_PB00174 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AMC79_CH03988 HhH-GPD domain-containing protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AMC79_CH03518 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E AMC79_CH01025 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AMC79_CH00840 tag; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AMC79_CH00396 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AMC79_CH03861 endonuclease III family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AMC79_CH01942 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E AMC79_CH01780 exodeoxyribonuclease III xth protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E AMC79_CH04187 exodeoxyribonuclease III xth protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E AMC79_CH02009 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E AMC79_CH02998 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E AMC79_CH00195 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AMC79_CH02232 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E AMC79_CH02690 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E AMC79_CH01499 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E AMC79_CH00609 DNA helicase UvrD-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AMC79_CH02981 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AMC79_CH00195 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E AMC79_CH02998 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F AMC79_CH01710 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F AMC79_CH01711 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AMC79_CH01745 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F AMC79_CH01410 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F AMC79_CH02219 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AMC79_CH00430 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E AMC79_CH00877 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E AMC79_CH00317 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E AMC79_CH00945 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E AMC79_CH01659 dnaE1; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AMC79_CH00359 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E AMC79_CH01484 DNA polymerase III chi subunit HolC protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E AMC79_CH04342 DNA polymerase III delta subunit protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E AMC79_CH02293 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E AMC79_CH00005 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AMC79_PB00326 DNA polymerase III subunit epsilon protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AMC79_CH02996 exonuclease RNase T/DNA polymerase III protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AMC79_CH00166 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E AMC79_CH02998 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E AMC79_CH00609 DNA helicase UvrD-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AMC79_CH02981 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AMC79_CH02233 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AMC79_CH02450 recA; recombinase A K03553 recA; recombination protein RecA
E AMC79_CH03644 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AMC79_CH03645 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AMC79_CH03641 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E AMC79_CH04089 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E AMC79_CH02450 recA; recombinase A K03553 recA; recombination protein RecA
E AMC79_CH01460 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E AMC79_CH00182 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E AMC79_CH02217 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AMC79_PD00122 HTH domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AMC79_CH02009 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AMC79_CH01420 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E AMC79_CH00163 recR; recombination protein RecR K06187 recR; recombination protein RecR
E AMC79_CH02999 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E AMC79_CH03644 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AMC79_CH03645 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AMC79_CH03641 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E AMC79_CH00028 double-strand break repair helicase AddA type protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E AMC79_CH00029 double-strand break repair helicase AddB type protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E AMC79_CH01227 nucleotide triphosphate hydrolase protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E AMC79_CH00654 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku
E AMC79_CH00656 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku
E AMC79_PB00196 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku
E AMC79_PB00197 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku
E AMC79_CH01843 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku
E AMC79_CH01844 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku
E AMC79_CH00655 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E AMC79_PB00166 DNA polymerase LigD domain-containing protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E AMC79_PB00198 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E AMC79_PB00200 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AMC79_CH02235 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AMC79_CH00012 gyrB-1; DNA gyrase subunit B 1 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AMC79_PB00165 DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F AMC79_CH01674 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F AMC79_CH01621 DNA-binding HU-like protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F AMC79_CH02009 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AMC79_CH01420 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F AMC79_CH00163 recR; recombination protein RecR K06187 recR; recombination protein RecR
F AMC79_CH02998 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F AMC79_CH01560 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F AMC79_CH00442 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F AMC79_CH03117 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AMC79_CH02232 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F AMC79_CH02690 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AMC79_PD00157 dinB-2; DNA polymerase IV 2 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D AMC79_PD00807 dinB-3; DNA polymerase IV 3 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D AMC79_CH01663 dinB-1; DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D AMC79_CH02450 recA; recombinase A K03553 recA; recombination protein RecA
D AMC79_CH02108 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D AMC79_CH02999 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D AMC79_CH01828 imuA-1; inducible mutagenesis protein ImuA 1 K14160 imuA; protein ImuA
D AMC79_PD00805 imuA-2; inducible mutagenesis protein ImuA 2 K14160 imuA; protein ImuA
D AMC79_CH04307 inducible mutagenesis ImuA-like protein K14160 imuA; protein ImuA
D AMC79_CH01829 imuB-1; DNA-repair protein ImuB 1 K14161 imuB; protein ImuB
D AMC79_PD00804 imuB-3; DNA-repair protein ImuB 3 K14161 imuB; protein ImuB
D AMC79_CH04306 imuB-2; DNA-repair protein ImuB 2 K14161 imuB; protein ImuB
D AMC79_CH01830 dnaE2-1; error-prone DNA polymerase 1 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D AMC79_PD00803 dnaE2-3; error-prone DNA polymerase 3 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D AMC79_CH04305 dnaE2-2; error-prone DNA polymerase 2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D AMC79_CH02233 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D AMC79_CH00293 recX; DNA repair regulator protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D AMC79_CH01860 DNA helicase UvrD-like protein K03658 helD; DNA helicase IV [EC:5.6.2.4]
D AMC79_CH00584 DEAD/DEAH box type DNA/RNA helicase protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D AMC79_CH03968 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMC79_CH02405 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMC79_CH04137 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMC79_PD00033 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AMC79_CH00371 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AMC79_CH01878 nrdJ; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AMC79_CH03919 nrdE; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AMC79_CH03918 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024