+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhizobium phaseoli

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AMC79_CH00326 methylated-DNA--protein-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AMC79_CH01912 deoxyribodipyrimidine photo-lyase protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AMC79_CH03406 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AMC79_CH03518 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E AMC79_CH01025 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AMC79_CH03861 endonuclease III family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AMC79_CH03968 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMC79_CH02405 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMC79_CH04137 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMC79_PD00033 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMC79_CH00371 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AMC79_CH00326 methylated-DNA--protein-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AMC79_CH03859 methylated-DNA--protein-cysteine S-methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AMC79_CH00467 methylated-DNA--protein-cysteine S-methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AMC79_CH01912 deoxyribodipyrimidine photo-lyase protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D AMC79_CH00041 alkB; DNA oxidative demethylase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E AMC79_CH03406 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AMC79_CH03134 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AMC79_CH01353 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AMC79_PB00174 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AMC79_CH03988 HhH-GPD domain-containing protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E AMC79_CH03518 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E AMC79_CH01025 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AMC79_CH00840 tag; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AMC79_CH00396 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AMC79_CH03861 endonuclease III family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AMC79_CH01942 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AMC79_CH01780 exodeoxyribonuclease III xth protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AMC79_CH04187 exodeoxyribonuclease III xth protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E AMC79_CH02009 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AMC79_CH02998 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AMC79_CH00195 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AMC79_CH02232 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AMC79_CH02690 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AMC79_CH01499 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AMC79_CH00609 DNA helicase UvrD-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMC79_CH02981 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMC79_CH00195 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AMC79_CH02998 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AMC79_CH01710 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AMC79_CH01711 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AMC79_CH01745 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AMC79_CH01410 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AMC79_CH02219 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AMC79_CH00430 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E AMC79_CH00877 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AMC79_CH00317 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AMC79_CH00945 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AMC79_CH01659 dnaE1; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AMC79_CH00359 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AMC79_CH01484 DNA polymerase III chi subunit HolC protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E AMC79_CH04342 DNA polymerase III delta subunit protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AMC79_CH02293 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AMC79_CH00005 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMC79_PB00326 DNA polymerase III subunit epsilon protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMC79_CH02996 exonuclease RNase T/DNA polymerase III protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMC79_CH00166 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AMC79_CH02998 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AMC79_CH00609 DNA helicase UvrD-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMC79_CH02981 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMC79_CH02233 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AMC79_CH02450 recA; recombinase A K03553 recA; recombination protein RecA E AMC79_CH03644 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AMC79_CH03645 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMC79_CH03641 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AMC79_CH04089 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E AMC79_CH02450 recA; recombinase A K03553 recA; recombination protein RecA E AMC79_CH01460 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AMC79_CH00182 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E AMC79_CH02217 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AMC79_PD00122 HTH domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AMC79_CH02009 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AMC79_CH01420 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AMC79_CH00163 recR; recombination protein RecR K06187 recR; recombination protein RecR E AMC79_CH02999 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AMC79_CH03644 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AMC79_CH03645 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMC79_CH03641 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E AMC79_CH00028 double-strand break repair helicase AddA type protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E AMC79_CH00029 double-strand break repair helicase AddB type protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E AMC79_CH01227 nucleotide triphosphate hydrolase protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E AMC79_CH00654 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMC79_CH00656 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMC79_PB00196 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMC79_PB00197 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMC79_CH01843 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMC79_CH01844 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMC79_CH00655 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E AMC79_PB00166 DNA polymerase LigD domain-containing protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E AMC79_PB00198 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E AMC79_PB00200 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AMC79_CH02235 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AMC79_CH00012 gyrB-1; DNA gyrase subunit B 1 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AMC79_PB00165 DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AMC79_CH01674 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AMC79_CH01621 DNA-binding HU-like protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AMC79_CH02009 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AMC79_CH01420 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AMC79_CH00163 recR; recombination protein RecR K06187 recR; recombination protein RecR F AMC79_CH02998 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F AMC79_CH01560 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F AMC79_CH00442 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F AMC79_CH03117 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AMC79_CH02232 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AMC79_CH02690 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AMC79_PD00157 dinB-2; DNA polymerase IV 2 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AMC79_PD00807 dinB-3; DNA polymerase IV 3 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AMC79_CH01663 dinB-1; DNA polymerase IV 1 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D AMC79_CH02450 recA; recombinase A K03553 recA; recombination protein RecA D AMC79_CH02108 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D AMC79_CH02999 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AMC79_CH01828 imuA-1; inducible mutagenesis protein ImuA 1 K14160 imuA; protein ImuA D AMC79_PD00805 imuA-2; inducible mutagenesis protein ImuA 2 K14160 imuA; protein ImuA D AMC79_CH04307 inducible mutagenesis ImuA-like protein K14160 imuA; protein ImuA D AMC79_CH01829 imuB-1; DNA-repair protein ImuB 1 K14161 imuB; protein ImuB D AMC79_PD00804 imuB-3; DNA-repair protein ImuB 3 K14161 imuB; protein ImuB D AMC79_CH04306 imuB-2; DNA-repair protein ImuB 2 K14161 imuB; protein ImuB D AMC79_CH01830 dnaE2-1; error-prone DNA polymerase 1 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AMC79_PD00803 dnaE2-3; error-prone DNA polymerase 3 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AMC79_CH04305 dnaE2-2; error-prone DNA polymerase 2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AMC79_CH02233 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein D AMC79_CH00293 recX; DNA repair regulator protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AMC79_CH01860 DNA helicase UvrD-like protein K03658 helD; DNA helicase IV [EC:5.6.2.4] D AMC79_CH00584 DEAD/DEAH box type DNA/RNA helicase protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D AMC79_CH03968 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMC79_CH02405 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMC79_CH04137 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMC79_PD00033 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMC79_CH00371 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AMC79_CH01878 nrdJ; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AMC79_CH03919 nrdE; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AMC79_CH03918 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024