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Transfer RNA Biogenesis - Rubrobacter radiotolerans
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D RradSPS_1961 Glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RradSPS_0537 glutamyl-queuosine tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RradSPS_2267 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RradSPS_1045 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RradSPS_0548 ileS: isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RradSPS_2761 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RradSPS_0379 metG: methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RradSPS_1604 argS: arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RradSPS_1355 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D RradSPS_1363 alaS: alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RradSPS_2117 putative metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RradSPS_0648 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RradSPS_1275 thrS: threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RradSPS_1041 serS: serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RradSPS_1960 cysS: cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RradSPS_1545 valS: valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RradSPS_1335 hisS: histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RradSPS_1281 pheS: phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RradSPS_1282 phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RradSPS_1287 tyrS: tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RradSPS_0136 trpS: tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D RradSPS_0525 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D RradSPS_2148 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D RradSPS_1807 putative S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RradSPS_2647 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D RradSPS_1910 tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RradSPS_1420 TruB: tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D RradSPS_1357 Cysteine sulfinate desulfinase/cysteine desulfurase-related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RradSPS_0091 Cysteine sulfinate desulfinase/cysteine desulfurase-related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D RradSPS_1592 Putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RradSPS_1434 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RradSPS_1016 selD: selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D RradSPS_2771 rnpA: ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D RradSPS_0309 2'-5' RNA ligase superfamily K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D RradSPS_2761 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RradSPS_1968 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RradSPS_1045 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D RradSPS_1287 tyrS: tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RradSPS_0136 trpS: tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RradSPS_1275 thrS: threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RradSPS_0548 ileS: isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RradSPS_1363 alaS: alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RradSPS_2117 putative metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RradSPS_1545 valS: valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RradSPS_0379 metG: methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RradSPS_1041 serS: serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RradSPS_1355 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RradSPS_1960 cysS: cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RradSPS_1961 Glutamyl- and glutaminyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RradSPS_0537 glutamyl-queuosine tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RradSPS_2267 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RradSPS_1604 argS: arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RradSPS_1281 pheS: phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RradSPS_1282 phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RradSPS_1335 hisS: histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
C Trans-editing factors
D RradSPS_0525 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
D RradSPS_2292 Cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RradSPS_2164 Cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
C Methylthiotransferases
D RradSPS_1433 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D RradSPS_0139 Methyltransferase domain K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D RradSPS_0475 tRNAm(5)U-54 methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D RradSPS_1807 putative S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RradSPS_1397 trmD: tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RradSPS_2647 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D RradSPS_1280 SpoU rRNA Methylase family K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D RradSPS_1910 tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RradSPS_1420 TruB: tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D RradSPS_1358 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RradSPS_1357 Cysteine sulfinate desulfinase/cysteine desulfurase-related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RradSPS_0091 Cysteine sulfinate desulfinase/cysteine desulfurase-related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RradSPS_2719 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D RradSPS_1434 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RradSPS_1326 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RradSPS_2120 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RradSPS_2733 TIGR00276: epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D RradSPS_1016 selD: selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D RradSPS_1327 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RradSPS_1975 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RradSPS_0687 tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RradSPS_1592 Putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RradSPS_0691 tRNA threonylcarbamoyl adenosine modification protein YgjD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RradSPS_0686 tRNA threonylcarbamoyl adenosine modification protein YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C RradSPS_1556 VacB and RNase II family 3'-5' exoribonuclease K12573 rnr; ribonuclease R [EC:3.1.13.1]
C RradSPS_1423 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C RradSPS_1319 putative nucleic acid-binding protein contains PIN domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C RradSPS_2798 putative nucleic acid-binding protein contains PIN domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024