+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Rhincodon typus (whale shark)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        109921440 polr2a; DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        109913092 polr2b; DNA-directed RNA polymerase II subunit RPB2 isoform X1	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        109913855 polr2c; DNA-directed RNA polymerase II subunit RPB3 isoform X2	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        109922194 polr2j; DNA-directed RNA polymerase II subunit RPB11-a	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        109911749 polr2d; DNA-directed RNA polymerase II subunit RPB4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        109925300 polr2g; DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        109922352 DNA-directed RNA polymerase II subunit RPB9	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        109931451 DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        109926359 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        109936978 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        109928920 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        109934226 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        109922522 gtf2a1; transcription initiation factor IIA subunit 1 isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
D      TFIIB
E        109936974 gtf2b; transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        109927346 tbpl2; TATA box-binding protein-like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109927050 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109937407 tbpl1; TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109935546 taf1; transcription initiation factor TFIID subunit 1 isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        109922911 taf2; transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        109915565 taf3; transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        109911923 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        109938561 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        109927131 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        109927083 taf5l; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        109923691 taf5; transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        109926156 taf6l; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        109937280 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        109913835 taf9; transcription initiation factor TFIID subunit 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        109938869 transcription initiation factor TFIID subunit 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        125486081 transcription initiation factor TFIID subunit 11-like	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        109919057 taf12; transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        109930425 taf13; transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        109916974 TATA-binding protein-associated factor 2N-like isoform X1	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        109920642 gtf2e1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        109929939 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        109918706 gtf2e2; transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        109918919 gtf2f1; general transcription factor IIF subunit 1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
D      TFIIH
E        109912262 gtf2h1; general transcription factor IIH subunit 1 isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        109925322 gtf2h2; general transcription factor IIH subunit 2 isoform X1	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        109936922 gtf2h3; general transcription factor IIH subunit 3 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        109918457 ercc3; general transcription and DNA repair factor IIH helicase subunit XPB isoform X1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        109934881 gtf2h5; general transcription factor IIH subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        109927171 cdk7; cyclin-dependent kinase 7 isoform X1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        109912981 ccnh; cyclin-H	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        109927896 med8; mediator of RNA polymerase II transcription subunit 8	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        109933305 med17; mediator of RNA polymerase II transcription subunit 17 isoform X1	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        109931890 med20; mediator of RNA polymerase II transcription subunit 20 isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        109921071 med22; mediator of RNA polymerase II transcription subunit 22 isoform X2	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        109923984 med29; mediator of RNA polymerase II transcription subunit 29	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        109914395 med30; mediator of RNA polymerase II transcription subunit 30 isoform X2	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
E        109932306 zgc:114119; mediator of RNA polymerase II transcription subunit 30-like	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        109934430 med1; mediator of RNA polymerase II transcription subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        109925244 med4; mediator of RNA polymerase II transcription subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        109914493 med9; mediator of RNA polymerase II transcription subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        109933610 mediator of RNA polymerase II transcription subunit 21 isoform X4	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        109923662 mediator of RNA polymerase II transcription subunit 31-A	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
E        125486175 mediator of RNA polymerase II transcription subunit 31-A	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        109927786 med14; mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        109935291 med16; mediator of RNA polymerase II transcription subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        109915839 cdk19; cyclin-dependent kinase 19 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        109922151 cdk8; cyclin-dependent kinase 8 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        109916770 ccnc; cyclin-C isoform X1	K15161 CCNC; cyclin-C 
E        109930702 med12; mediator of RNA polymerase II transcription subunit 12 isoform X1	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
D      Other mediators
E        109933525 med23; mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        109930464 med24; mediator of RNA polymerase II transcription subunit 24 isoform X1	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        109936633 med25; mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        109927425 crsp7; mediator of RNA polymerase II transcription subunit 26 isoform X1	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        109937737 med27; mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        109922205 kat2a; histone acetyltransferase KAT2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        109936153 supt3h; transcription initiation protein SPT3 homolog	K11313 SUPT3H; transcription initiation protein SPT3 
E        109921052 tada2a; transcriptional adapter 2-alpha isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        109912432 tada2b; transcriptional adapter 2-beta	K15127 TADA2B; transcriptional adapter 2-beta 
E        109910865 tada3l; transcriptional adapter 3	K11315 TADA3; transcriptional adapter 3 
E        109914065 tada1; transcriptional adapter 1	K11317 TADA1; transcriptional adapter 1 
E        109922911 taf2; transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        109911923 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        109938561 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        109927131 transcription initiation factor TFIID subunit 4-like	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        109927083 taf5l; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        109923691 taf5; transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        109926156 taf6l; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        109937280 transcription initiation factor TFIID subunit 6-like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        109913835 taf9; transcription initiation factor TFIID subunit 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        109919057 taf12; transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        109924589 atxn7l3a; ataxin-7-like protein 3 isoform X3	K11363 SGF11; SAGA-associated factor 11 
E        109938950 supt7l; STAGA complex 65 subunit gamma	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        109916945 ataxin-7 isoform X1	K11318 ATXN7; ataxin-7 
E        109912870 LOW QUALITY PROTEIN: ataxin-7-like protein 1	K11318 ATXN7; ataxin-7 
E        109913324 ataxin-7-like protein 1	K11318 ATXN7; ataxin-7 
E        109926839 chromodomain-helicase-DNA-binding protein 1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        109916725 eny2; transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        109912108 usp22; ubiquitin carboxyl-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
D      BAF/PBAF complex
E        109922918 smarca4a; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        109916631 smarca2; probable global transcription activator SNF2L2 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        109910767 smarcb1a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X3	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        109925008 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X2	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        109938887 smarcc1a; SWI/SNF complex subunit SMARCC1 isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        109921140 smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        109930580 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        109911698 actin, cytoplasmic type 5	K05692 ACTB_G1; actin beta/gamma 1 
E        109920530 actin, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        109925500 actin-3-like	K05692 ACTB_G1; actin beta/gamma 1 
E        109915807 actin, cytoplasmic type 5-like	K05692 ACTB_G1; actin beta/gamma 1 
E        109923292 actin-like protein 6A	K11340 ACTL6A; actin-like protein 6A 
E        109938228 actin-like protein 6B isoform X1	K11652 ACTL6B; actin-like protein 6B 
E        109930802 AT-rich interactive domain-containing protein 1B-like isoform X5	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        109937816 AT-rich interactive domain-containing protein 1A isoform X2	K11653 ARID1; AT-rich interactive domain-containing protein 1 
D      SWI/SNF complex
E        109910767 smarcb1a; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X3	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        109925008 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X2	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
C    Other transcription-related factors
D      Transcription elongation factors
E        109935417 tcea1; transcription elongation factor A protein 1 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        109919946 transcription elongation factor A protein 1	K03145 TFIIS; transcription elongation factor S-II 
E        109937622 tcea3; transcription elongation factor A protein 3 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        125486141 supt4h1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        109912587 supt5h; transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        109917850 supt6h; transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        109929721 ttf2; transcription termination factor 2	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        109932255 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        109924290 cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        109910471 cpsf4; cleavage and polyadenylation specificity factor subunit 4 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        109922938 cleavage and polyadenylation specificity factor subunit 4-like	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        109910556 serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        109935119 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        109919165 sympk; symplekin isoform X1	K06100 SYMPK; symplekin 
E        109938018 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        109937892 dxo; decapping and exoribonuclease protein	K14845 RAI1; RAT1-interacting protein 
E        109912180 regulation of nuclear pre-mRNA domain-containing protein 1A-like isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        125481545 regulation of nuclear pre-mRNA domain-containing protein 1B-like	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        109930383 splicing factor, proline- and glutamine-rich-like isoform X1	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        109914506 scaf8; SR-related and CTD-associated factor 8	K13191 RBM16; RNA-binding protein 16 
E        109935022 setx; probable helicase senataxin isoform X1	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        109934014 pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        109937645 paf1; RNA polymerase II-associated factor 1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        109915317 cdc73; parafibromin	K15175 CDC73; parafibromin 
E        109920162 ctr9; RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        109916060 leo1; RNA polymerase-associated protein LEO1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        109913250 rtf1; RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        109913771 nelfb; negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        109937602 nelfcd; negative elongation factor C/D isoform X1	K15181 TH1L; negative elongation factor C/D 
E        109918404 nelfe; negative elongation factor E	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        109921738 RNA polymerase II elongation factor ELL isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        109926034 aff4; AF4/FMR2 family member 4 isoform X1	K15185 AFF4; AF4/FMR2 family member 4 
E        109914824 eaf1; ELL-associated factor 1	K15186 EAF; ELL-associated factor 
E        109920287 eaf2; ELL-associated factor 2	K15186 EAF; ELL-associated factor 
E        109927307 mllt3; protein AF-9 isoform X1	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        109931001 ccnt2a; cyclin-T2a isoform X1	K15188 CCNT; cyclin T 
E        109936102 cdk9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        109921738 RNA polymerase II elongation factor ELL isoform X1	K15183 ELL; RNA polymerase II elongation factor ELL 
E        109929743 uncharacterized protein LOC109929743	K26143 ICE1; little elongation complex subunit 1 
D      Brd4/P-TEFb complex
E        109931001 ccnt2a; cyclin-T2a isoform X1	K15188 CCNT; cyclin T 
E        109936102 cdk9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        109933779 hexim1; protein HEXIM1	K15189 HEXIM1_2; protein HEXIM1/2 
E        109930457 7SK snRNA methylphosphate capping enzyme isoform X1	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        109931001 ccnt2a; cyclin-T2a isoform X1	K15188 CCNT; cyclin T 
E        109936102 cdk9; cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
E        109929889 znf326; DBIRD complex subunit ZNF326 isoform X1	K13204 ZNF326; zinc finger protein 326 
D      Others
E        109928685 general transcription factor II-I-like isoform X1	K03121 TFII-I; transcription initiation factor TFII-I 
E        109922819 btaf1; TATA-binding protein-associated factor 172	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        109910459 dr1; protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        109926032 protein Dr1-like	K21751 DR1; down-regulator of transcription 1 
E        109937252 spty2d1; protein SPT2 homolog	K15193 SPTY2D1; protein SPT2 
E        109928403 ctdspla; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        109929224 protein IWS1 homolog A	K17498 SPN1; transcription factor SPN1 
E        109910697 csrnp1b; cysteine/serine-rich nuclear protein 1b	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        109933125 csrnp3; cysteine/serine-rich nuclear protein 3 isoform X1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        109912418 rpap1; RNA polymerase II-associated protein 1 isoform X2	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        109931498 rpap2; putative RNA polymerase II subunit B1 CTD phosphatase rpap2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        109931292 rpap3; RNA polymerase II-associated protein 3 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        109912603 ccnk; cyclin-K isoform X2	K23326 CCNK; cyclin K 
E        109911401 gpn3; GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        109937736 gpn2; GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        109928088 polr3a; DNA-directed RNA polymerase III subunit RPC1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        109910721 polr3b; DNA-directed RNA polymerase III subunit RPC2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        109920253 polr1c; DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
D      Pol III specific subunits
E        109925970 polr3c; DNA-directed RNA polymerase III subunit RPC3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        109911456 polr3d; DNA-directed RNA polymerase III subunit RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        109918129 polr3e; DNA-directed RNA polymerase III subunit RPC5 isoform X5	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        109914640 polr3f; DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        109926068 polr3glb; RNA polymerase III subunit GL b isoform X1	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        109914538 DNA-directed RNA polymerase III subunit RPC9 isoform X1	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
D      Pol I, II, III common subunits
E        109931451 DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        109926359 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        109936978 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        109928920 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        109934226 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        109914381 si:dkey-208k4.2; P43 5S RNA-binding protein-like isoform X2	K09191 GTF3A; general transcription factor IIIA 
E        109929504 gtf3ab; general transcription factor IIIA, b	K09191 GTF3A; general transcription factor IIIA 
E        109934505 oocyte zinc finger protein XlCOF15-like	K09191 GTF3A; general transcription factor IIIA 
E        109913555 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109925006 gastrula zinc finger protein XlCGF71.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109934667 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109934675 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109934676 zinc finger protein 271-like isoform X1	K09191 GTF3A; general transcription factor IIIA 
E        109920218 zinc finger protein 664-like	K09191 GTF3A; general transcription factor IIIA 
E        109938405 gastrula zinc finger protein XlCGF7.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109912544 gastrula zinc finger protein XlCGF7.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109915888 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109918058 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109912664 zinc finger protein 774-like	K09191 GTF3A; general transcription factor IIIA 
E        109928792 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109928795 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109933330 zinc finger protein 664-like	K09191 GTF3A; general transcription factor IIIA 
E        109936037 gastrula zinc finger protein XlCGF71.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109914950 zinc finger protein 664-like	K09191 GTF3A; general transcription factor IIIA 
E        109932072 oocyte zinc finger protein XlCOF15-like	K09191 GTF3A; general transcription factor IIIA 
E        109937418 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109920596 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109912888 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109917340 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109917349 zinc finger protein 664-like	K09191 GTF3A; general transcription factor IIIA 
E        109920674 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109925476 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109936349 gastrula zinc finger protein XlCGF8.2DB-like	K09191 GTF3A; general transcription factor IIIA 
E        109936350 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109926730 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109918637 gastrula zinc finger protein XlCGF7.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109919744 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109923482 zinc finger protein 235-like	K09191 GTF3A; general transcription factor IIIA 
E        109923507 gastrula zinc finger protein XlCGF8.2DB-like	K09191 GTF3A; general transcription factor IIIA 
E        109929584 gastrula zinc finger protein XlCGF71.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109936601 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109914260 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109919792 zinc finger protein 774-like	K09191 GTF3A; general transcription factor IIIA 
E        109916583 gastrula zinc finger protein XlCGF71.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109923694 zinc finger protein 271-like	K09191 GTF3A; general transcription factor IIIA 
E        109928185 oocyte zinc finger protein XlCOF19-like	K09191 GTF3A; general transcription factor IIIA 
E        109928189 zinc finger protein 774-like	K09191 GTF3A; general transcription factor IIIA 
E        109928194 oocyte zinc finger protein XlCOF19-like	K09191 GTF3A; general transcription factor IIIA 
E        125487018 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109913767 zinc finger protein 214-like	K09191 GTF3A; general transcription factor IIIA 
E        125481039 gastrula zinc finger protein XlCGF7.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109910674 gastrula zinc finger protein XlCGF8.2DB-like	K09191 GTF3A; general transcription factor IIIA 
E        109938354 gastrula zinc finger protein XlCGF7.1-like isoform X1	K09191 GTF3A; general transcription factor IIIA 
E        109936376 zinc finger protein 239-like isoform X1	K09191 GTF3A; general transcription factor IIIA 
E        125481067 gastrula zinc finger protein XlCGF71.1-like	K09191 GTF3A; general transcription factor IIIA 
E        109919415 zinc finger protein 214-like	K09191 GTF3A; general transcription factor IIIA 
E        125481803 gastrula zinc finger protein XlCGF8.2DB-like	K09191 GTF3A; general transcription factor IIIA 
E        125481825 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        109922027 zinc finger protein 239-like	K09191 GTF3A; general transcription factor IIIA 
E        125483805 zinc finger protein 3-like	K09191 GTF3A; general transcription factor IIIA 
E        109931383 zinc finger protein 879-like	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        109927346 tbpl2; TATA box-binding protein-like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109927050 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109937407 tbpl1; TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109919797 transcription factor IIIB 50 kDa subunit	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
D      TFIIIC
E        109922756 general transcription factor 3C polypeptide 1 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        109939093 gtf3c4; general transcription factor 3C polypeptide 4	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        109916042 gtf3c5; general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
D      TFIIIC, fungi type
E        109916042 gtf3c5; general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        109915463 snapc1b; snRNA-activating protein complex subunit 1b isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        109921984 snapc2; snRNA-activating protein complex subunit 2	K15209 SNAPC2; snRNA-activating protein complex subunit 2 
E        109933591 snapc5; snRNA-activating protein complex subunit 5	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        109923136 POU domain, class 2, transcription factor 3-like	K09364 POU2F; POU domain transcription factor, class 2 
E        109914645 POU domain, class 5, transcription factor 3-like	K09367 POU5F; POU domain transcription factor, class 5 
E        109922237 POU domain, class 5, transcription factor 3	K09367 POU5F; POU domain transcription factor, class 5 
D      Others
E        109921277 zinc finger protein 143-like	K20828 ZNF143_76; zinc finger protein 143/76 
E        109916884 zinc finger protein 76-like isoform X1	K20828 ZNF143_76; zinc finger protein 143/76 
E        109923180 repressor of RNA polymerase III transcription MAF1 homolog isoform X1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        109936551 polr1b; DNA-directed RNA polymerase I subunit RPA2 isoform X1	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        109920253 polr1c; DNA-directed RNA polymerases I and III subunit RPAC1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
D      Pol I specific subunits
E        109927720 polr1f; DNA-directed RNA polymerase I subunit RPA43	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        109925531 polr1g; CD3e molecule, epsilon associated protein	K25436 POLR1G; DNA-directed RNA polymerase I subunit RPA34 
D      Pol I, II, III common subunits
E        109931451 DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        109926359 polr2f; DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        109936978 polr2h; DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        109928920 polr2k; DNA-directed RNA polymerases I, II, and III subunit RPABC4	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        109934226 polr2l; DNA-directed RNA polymerases I, II, and III subunit RPABC5	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        109927346 tbpl2; TATA box-binding protein-like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109927050 TATA-box-binding protein isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109937407 tbpl1; TATA box-binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        109911947 taf1a; TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        109927434 taf1b; TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        109911099 taf1c; TATA box-binding protein-associated factor RNA polymerase I subunit C	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
E        109927450 TATA box-binding protein-associated factor RNA polymerase I subunit D isoform X1	K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D 
C    Other transcription-related factors
D      UBF
E        109923992 ubtfl; upstream binding transcription factor, like	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
D      Transcription elongation factors
E        125486141 supt4h1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        109912587 supt5h; transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        109935289 smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
E        109911952 nucleolar and coiled-body phosphoprotein 1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        109936974 gtf2b; transcription initiation factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        109920642 gtf2e1; general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        109929939 general transcription factor IIE subunit 1-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024