+E Ribosome biogenesis KO
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Ribosome Biogenesis - Simiduia agarivorans
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D M5M_03325 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D M5M_14840 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C M5M_03320 GTP-binding protein Era K03595 era; GTPase
C M5M_08725 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C M5M_07265 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C M5M_07350 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C M5M_09850 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C M5M_09220 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D M5M_00870 16S rRNA pseudouridylate synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D M5M_15510 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D M5M_12385 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D M5M_14400 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D M5M_00865 putative ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D M5M_12875 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D M5M_13675 16S rRNA m3U1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D M5M_12485 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D M5M_17770 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D M5M_17750 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D M5M_05450 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D M5M_12570 ribosomal RNA methyltransferase RrmJ/FtsJ K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D M5M_04505 Ribosomal RNA large subunit methyltransferase A (rRNA (guanine-N(1)-)-methyltransferase) (23S rRNA m1G745 methyltransferase) K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D M5M_00660 TrmH family RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D M5M_10240 TrmH family RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D M5M_14785 ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D M5M_14005 Ribosomal RNA large subunit methyltransferase G K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D M5M_07115 ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D M5M_04135 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D M5M_13500 putative lipoprotein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D M5M_03930 DNA utilization protein YhiR K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D M5M_01060 rlmL; 23S rRNA m(2)G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D M5M_04175 23S rRNA C2498 ribose 2'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D M5M_04710 radical SAM enzyme, Cfr family protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D M5M_12570 ribosomal RNA methyltransferase RrmJ/FtsJ K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D M5M_03300 rumA; 23S rRNA m(5)U1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D M5M_03625 RNA pseudouridine synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D M5M_03935 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D M5M_01770 pseudouridine synthase Rlu family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D M5M_00730 RNA pseudouridylate synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D M5M_03690 pseudouridine synthase Rlu family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D M5M_17705 pseudouridine synthase Rlu family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D M5M_06670 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D M5M_03145 Ribosomal large subunit pseudouridine synthase E, rRNA-uridine isomerase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C M5M_08580 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C M5M_10540 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C M5M_03480 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C M5M_07045 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C M5M_15635 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C M5M_01655 HemK family modification methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C M5M_03170 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C M5M_03325 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C M5M_03695 rnaseE; ribonuclease, Rne/Rng family protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C M5M_17510 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
C M5M_11280 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C M5M_18355 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C M5M_02060 ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C M5M_03320 GTP-binding protein Era K03595 era; GTPase
C M5M_14835 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C M5M_04675 GTP-binding protein Der K03977 engA; GTPase
C M5M_08725 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C M5M_00155 rbgA; GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
C M5M_15355 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C M5M_12355 translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C M5M_12750 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C M5M_07340 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C M5M_07355 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C M5M_07120 iojap domain-containing protein K09710 ybeB; ribosome-associated protein
C M5M_17310 putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C M5M_07385 putative RNA binding protein yhbY K07574 yhbY; RNA-binding protein
C M5M_17530 hypothetical protein K09889 yjgA; ribosome-associated protein
C M5M_01057 ribosome modulation factor-related protein K03812 rmf; ribosome modulation factor
C M5M_17550 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C M5M_09320 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C M5M_03675 putative metal-binding/nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024