+D GENES KO #

  KEGG Orthology (KO) - Streptomyces janthinus

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:sjn00010] D RI060_23445 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_31320 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_38205 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_07815 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_32450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_06415 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_12535 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_31355 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_36625 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_14400 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D RI060_19155 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RI060_38740 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RI060_32430 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RI060_32420 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RI060_01070 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RI060_32425 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RI060_23255 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D RI060_25270 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_01630 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_12550 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RI060_31980 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RI060_28750 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RI060_40085 putative PEP-binding protein K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RI060_29760 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RI060_30980 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RI060_30990 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RI060_40050 2-oxo acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_16625 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RI060_16630 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RI060_30145 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_33880 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_39975 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D RI060_14990 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RI060_06585 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_37555 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D RI060_18780 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_08095 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_24100 acetate--CoA ligase family protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D RI060_19165 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RI060_29585 aldose epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RI060_29665 aldose epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RI060_41635 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RI060_14370 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D RI060_14850 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D RI060_27520 6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RI060_06290 6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RI060_35600 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] C 00020 Citrate cycle (TCA cycle) [PATH:sjn00020] D RI060_23915 citrate synthase 2 K01647 CS; citrate synthase [EC:2.3.3.1] D RI060_27225 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RI060_10435 citrate synthase/methylcitrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RI060_10440 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RI060_09730 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RI060_05115 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RI060_13320 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_16625 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RI060_16630 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RI060_15675 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RI060_06765 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RI060_15680 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RI060_06770 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RI060_14235 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_15405 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_04105 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_14240 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_15410 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_04100 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_15395 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RI060_04110 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RI060_15400 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RI060_14415 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D RI060_14430 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RI060_15600 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RI060_14850 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D RI060_29760 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RI060_30980 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RI060_30990 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RI060_40050 2-oxo acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:sjn00030] D RI060_32450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_06415 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_32525 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RI060_06405 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RI060_32515 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D RI060_02815 lactonase family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D RI060_21100 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RI060_04355 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RI060_06420 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RI060_35190 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D RI060_32535 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RI060_06395 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RI060_07210 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RI060_32530 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D RI060_06400 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D RI060_27835 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RI060_36565 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RI060_35990 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D RI060_15110 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D RI060_27155 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D RI060_41635 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RI060_25110 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RI060_30180 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RI060_39310 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RI060_10680 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RI060_24215 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D RI060_03280 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D RI060_34040 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D RI060_14810 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D RI060_28890 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D RI060_39315 sugar kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D RI060_19155 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RI060_38740 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RI060_14400 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D RI060_12535 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_31355 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_36625 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:sjn00040] D RI060_22835 pectinesterase family protein K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D RI060_32855 pectinesterase family protein K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D RI060_32875 pectinesterase family protein K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D RI060_32905 pectate lyase K22539 PLY; pectate lyase [EC:4.2.2.2] D RI060_38020 pectate lyase K22539 PLY; pectate lyase [EC:4.2.2.2] D RI060_32835 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D RI060_32870 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D RI060_32885 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D RI060_38025 polysaccharide lyase family 1 protein K01728 pel; pectate lyase [EC:4.2.2.2] D RI060_28870 D-galactonate dehydratase family protein K08323 rspA; mannonate dehydratase [EC:4.2.1.8] D RI060_28875 mannitol dehydrogenase family protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D RI060_39270 glycoside hydrolase family 2 TIM barrel-domain containing protein K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D RI060_25525 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RI060_03310 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RI060_24800 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RI060_35190 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D RI060_38465 L-fucose/L-arabinose isomerase family protein K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D RI060_28960 FGGY family carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D RI060_36755 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D RI060_36760 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D RI060_08345 FAD-binding protein K00594 xyoA; alditol oxidase [EC:1.1.3.41] D RI060_02890 rhaI; L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-] D RI060_02900 rhamnulokinase family protein K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D RI060_27750 FGGY family carbohydrate kinase K22935 XK1; D-ribulokinase [EC:2.7.1.47] D RI060_28115 bifunctional cytidylyltransferase/SDR family oxidoreductase K21681 bcs1; ribitol-5-phosphate 2-dehydrogenase (NADP+) / D-ribitol-5-phosphate cytidylyltransferase [EC:1.1.1.405 2.7.7.40] D RI060_33085 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:sjn00051] D RI060_38590 cellulase family glycosylhydrolase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D RI060_19690 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RI060_32375 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RI060_25665 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D RI060_15100 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RI060_25650 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RI060_35625 mannose-1-phosphate guanyltransferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D RI060_25595 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RI060_33085 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D RI060_04235 aldo/keto reductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D RI060_04225 amidohydrolase family protein K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120] D RI060_04245 L-fuconate dehydratase K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68] D RI060_02890 rhaI; L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-] D RI060_02900 rhamnulokinase family protein K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D RI060_12535 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_31355 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_36625 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_14400 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D RI060_24720 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D RI060_08345 FAD-binding protein K00594 xyoA; alditol oxidase [EC:1.1.3.41] D RI060_36760 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D RI060_36395 nucleotide sugar dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D RI060_19155 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RI060_38740 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RI060_32430 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RI060_19685 GH32 C-terminal domain-containing protein K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80] D RI060_04405 GH32 C-terminal domain-containing protein K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80] D RI060_27835 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RI060_36565 RpiB/LacA/LacB family sugar-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D RI060_24725 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RI060_25675 fructose-specific PTS transporter subunit EIIC K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191] D RI060_29895 HAD-IA family hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50] D RI060_34675 HAD family hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50] C 00052 Galactose metabolism [PATH:sjn00052] D RI060_19165 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RI060_29585 aldose epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RI060_29665 aldose epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D RI060_25035 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RI060_25025 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D RI060_17795 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_25030 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_25845 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_05810 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_24800 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RI060_41635 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RI060_23445 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_31320 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_38205 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_07815 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_02570 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_06325 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_07430 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_08380 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_39290 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D RI060_39675 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D RI060_39735 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D RI060_09110 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D RI060_09550 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D RI060_11115 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D RI060_39670 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D RI060_38570 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RI060_03395 ricin-type beta-trefoil lectin domain protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RI060_05700 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RI060_12535 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_31355 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_36625 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_29615 mandelate racemase/muconate lactonizing enzyme family protein K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D RI060_39305 dgoD; galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D RI060_23810 mucin-1 K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RI060_41295 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RI060_04375 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RI060_20245 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RI060_30620 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RI060_32480 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RI060_35580 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:sjn00053] D RI060_25525 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RI060_03310 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RI060_39270 glycoside hydrolase family 2 TIM barrel-domain containing protein K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D RI060_24215 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D RI060_04235 aldo/keto reductase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_12510 enolase C-terminal domain-like protein K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D RI060_28390 glucarate dehydratase family protein K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D RI060_37675 glucarate dehydratase family protein K01706 gudD; glucarate dehydratase [EC:4.2.1.40] D RI060_38435 aldolase/citrate lyase family protein K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20] D RI060_28385 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41] D RI060_32775 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41] D RI060_37680 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41] D RI060_32770 NAD(P)-dependent oxidoreductase K18981 udh; uronate dehydrogenase [EC:1.1.1.203] C 00500 Starch and sucrose metabolism [PATH:sjn00500] D RI060_23810 mucin-1 K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RI060_41295 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RI060_04375 glycoside hydrolase family 32 protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D RI060_20245 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RI060_30620 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RI060_32480 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RI060_35580 glycoside hydrolase family 31 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D RI060_41315 glycoside hydrolase family 32 protein K18775 lf2; levanbiose-producing levanase [EC:3.2.1.64] D RI060_24800 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RI060_29660 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_35985 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_04380 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_09170 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_11140 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_26850 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_28490 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_41975 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_12605 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_23785 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_26635 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_35255 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_37240 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_02565 glycoside hydrolase family 9 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_03415 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_06960 glycoside hydrolase family 6 protein K19668 CBH2; cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91] D RI060_27520 6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RI060_06290 6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D RI060_36340 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D RI060_04330 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D RI060_12425 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D RI060_41160 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D RI060_12400 glycosyltransferase family 1 protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D RI060_30625 alpha-amylase family protein K01176 AMY; alpha-amylase [EC:3.2.1.1] D RI060_12415 treS; maltose alpha-D-glucosyltransferase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D RI060_41170 treS; maltose alpha-D-glucosyltransferase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D RI060_27580 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D RI060_12420 maltokinase K16146 pep2; maltokinase [EC:2.7.1.175] D RI060_41165 maltokinase K16146 pep2; maltokinase [EC:2.7.1.175] D RI060_41175 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D RI060_04335 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D RI060_35600 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RI060_12335 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D RI060_41190 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D RI060_08910 glgX; glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D RI060_08915 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D RI060_08945 treZ; malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D RI060_23465 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D RI060_23460 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D RI060_02050 glycoside hydrolase family 65 protein K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64] D RI060_41635 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RI060_23445 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_31320 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_38205 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_07815 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_32450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_06415 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_19690 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RI060_32375 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:sjn00520] D RI060_12785 glycoside hydrolase family 18 chitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D RI060_35360 glycoside hydrolase family 18 protein K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D RI060_13540 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RI060_27085 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RI060_09185 glycoside hydrolase family 3 N-terminal domain-containing protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RI060_15385 glycoside hydrolase family 20 protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_26075 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_26930 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_01390 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_04280 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_41540 chitosanase K01233 csn; chitosanase [EC:3.2.1.132] D RI060_35600 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RI060_26305 PTS transporter subunit EIIC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D RI060_23440 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D RI060_13525 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D RI060_19690 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RI060_32375 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D RI060_13520 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_16085 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_26910 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_16110 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D RI060_25115 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D RI060_23535 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D RI060_06110 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D RI060_26045 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RI060_09745 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RI060_16465 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RI060_15285 N-acetylneuraminate synthase family protein K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56] D RI060_15870 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D RI060_04500 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D RI060_09480 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D RI060_29480 alpha-N-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55] D RI060_37250 glycoside hydrolase family 43 protein K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D RI060_08640 glycoside hydrolase family 43 protein K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D RI060_23445 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_31320 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_38205 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_07815 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_14370 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D RI060_41635 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RI060_24800 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RI060_25525 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RI060_03310 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RI060_25035 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RI060_25025 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D RI060_17795 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_25030 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_25845 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_05810 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_32450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_06415 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_25665 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D RI060_15100 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RI060_25650 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RI060_35625 mannose-1-phosphate guanyltransferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D RI060_25595 NDP-sugar synthase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RI060_36395 nucleotide sugar dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D RI060_36340 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D RI060_04330 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:sjn00620] D RI060_18780 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_08095 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_16625 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RI060_16630 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RI060_29760 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RI060_30980 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RI060_30990 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RI060_40050 2-oxo acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_39975 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D RI060_30145 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_33880 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_14990 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RI060_06585 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RI060_12545 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RI060_12540 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D RI060_12550 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RI060_31980 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RI060_15075 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D RI060_11605 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_37555 aldehyde dehydrogenase family protein K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D RI060_24100 acetate--CoA ligase family protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D RI060_08295 pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D RI060_02535 lactate 2-monooxygenase K00467 E1.13.12.4; lactate 2-monooxygenase [EC:1.13.12.4] D RI060_34980 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RI060_03280 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D RI060_13360 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RI060_26035 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RI060_39380 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RI060_15600 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RI060_14415 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D RI060_14430 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D RI060_25085 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D RI060_14850 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D RI060_28750 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RI060_40085 putative PEP-binding protein K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D RI060_07915 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_12280 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D RI060_28505 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D RI060_11895 cimA; citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:sjn00630] D RI060_18780 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_08095 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_07915 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D RI060_15600 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RI060_23915 citrate synthase 2 K01647 CS; citrate synthase [EC:2.3.3.1] D RI060_27225 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RI060_10435 citrate synthase/methylcitrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RI060_10440 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D RI060_09730 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_12675 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D RI060_07360 protein meaA K14447 ecm; ethylmalonyl-CoA mutase [EC:5.4.99.63] D RI060_23885 biotin carboxylase N-terminal domain-containing protein K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D RI060_15050 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RI060_01885 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RI060_15075 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D RI060_08135 methylmalonyl-CoA mutase family protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D RI060_08140 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D RI060_15335 methylmalonyl-CoA mutase family protein K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D RI060_26215 FAD-linked oxidase C-terminal domain-containing protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D RI060_01770 FAD-linked oxidase C-terminal domain-containing protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D RI060_39105 catalase K03781 katE; catalase [EC:1.11.1.6] D RI060_08050 catalase K03781 katE; catalase [EC:1.11.1.6] D RI060_03280 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D RI060_23625 haloacid dehalogenase-like hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D RI060_30575 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30695 glnII; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30905 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_34400 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_41955 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_05485 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_12845 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_15500 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_39040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_12220 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_35675 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D RI060_12210 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_12215 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D RI060_08065 gcl; glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47] D RI060_42065 TIM barrel protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D RI060_08040 TIM barrel protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D RI060_08045 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D RI060_31210 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RI060_07390 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RI060_30180 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RI060_39310 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RI060_10680 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D RI060_13320 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D RI060_42680 NAD-dependent formate dehydrogenase K00122 FDH; formate dehydrogenase [EC:1.17.1.9] D RI060_34020 cytochrome b/b6 domain-containing protein K00127 fdoI; formate dehydrogenase subunit gamma D RI060_23980 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D RI060_39065 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:sjn00640] D RI060_18780 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_08095 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_24100 acetate--CoA ligase family protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D RI060_12545 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RI060_12540 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D RI060_20600 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_20670 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_04725 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_20595 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_20665 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_04730 transketolase C-terminal domain-containing protein K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_20590 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RI060_20660 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_15075 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D RI060_39580 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_07640 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_11160 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RI060_23885 biotin carboxylase N-terminal domain-containing protein K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D RI060_15050 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RI060_01885 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RI060_12675 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D RI060_08135 methylmalonyl-CoA mutase family protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D RI060_08140 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D RI060_15335 methylmalonyl-CoA mutase family protein K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D RI060_15680 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RI060_06770 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RI060_15675 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RI060_06765 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RI060_27280 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RI060_05360 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00650 Butanoate metabolism [PATH:sjn00650] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_12740 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_20685 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_34505 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_39925 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_01655 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_07345 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_07355 ccrA; crotonyl-CoA carboxylase/reductase K17829 ccrA; crotonyl-CoA reductase [EC:1.3.1.86] D RI060_26730 aspartate/glutamate racemase family protein K01799 nicE; maleate isomerase [EC:5.2.1.1] D RI060_14235 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_15405 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_04105 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_14240 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_15410 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_04100 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_15395 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RI060_04110 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RI060_15400 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RI060_18215 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RI060_39580 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_07640 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_11160 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RI060_15825 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_36680 NADP-dependent succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_39590 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_40450 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_16625 2-oxoacid:acceptor oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D RI060_16630 2-oxoacid:ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D RI060_26970 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D RI060_06060 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D RI060_06065 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D RI060_30285 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D RI060_35585 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D RI060_38875 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D RI060_37190 acetoacetate decarboxylase K01574 adc; acetoacetate decarboxylase [EC:4.1.1.4] D RI060_27020 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RI060_11995 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RI060_11990 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:sjn00660] D RI060_27020 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RI060_11995 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RI060_11990 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RI060_15680 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RI060_06770 sucC; ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D RI060_15675 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RI060_06765 sucD; succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D RI060_03240 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D RI060_08430 RraA family protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D RI060_11740 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RI060_11735 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RI060_11910 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:sjn00562] D RI060_06140 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D RI060_40180 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RI060_10335 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RI060_21210 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D RI060_06830 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D RI060_42060 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_01980 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_05300 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_05315 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_07825 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_01970 TIM barrel protein K03335 iolE; inosose dehydratase [EC:4.2.1.44] D RI060_05320 sugar phosphate isomerase/epimerase K03335 iolE; inosose dehydratase [EC:4.2.1.44] D RI060_27275 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D RI060_05355 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D RI060_05350 iolB; 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D RI060_27260 iolC; 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D RI060_05340 iolC; 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D RI060_27280 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RI060_05360 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RI060_32430 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:sjn00190] D RI060_16605 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D RI060_16870 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D RI060_03640 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D RI060_16600 NADH-quinone oxidoreductase subunit B family protein K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D RI060_16865 NADH-quinone oxidoreductase subunit B family protein K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D RI060_16860 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D RI060_16855 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D RI060_18100 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D RI060_16850 nuoE; NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D RI060_16845 nuoF; NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D RI060_06900 NAD(P)H-dependent oxidoreductase subunit E K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D RI060_16840 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D RI060_16590 complex I subunit 1 family protein K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D RI060_16835 nuoH; NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D RI060_03630 NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D RI060_16585 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D RI060_16830 nuoI; NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D RI060_16580 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D RI060_16825 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D RI060_03625 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D RI060_16575 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D RI060_16820 nuoK; NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D RI060_16570 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D RI060_16815 nuoL; NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D RI060_03615 proton-conducting transporter membrane subunit K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D RI060_16565 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D RI060_16810 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D RI060_03610 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D RI060_16560 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D RI060_16805 nuoN; NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D RI060_03605 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D RI060_03620 nuoK; NADH-quinone oxidoreductase subunit NuoK K05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2] D RI060_22590 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D RI060_25290 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D RI060_37400 FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D RI060_41095 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D RI060_07215 FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D RI060_14235 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_15405 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_04105 fumarate reductase/succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D RI060_14240 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_15410 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_04100 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D RI060_15395 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RI060_04110 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D RI060_15400 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit D RI060_31190 Rieske 2Fe-2S domain-containing protein K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D RI060_31195 cytochrome bc complex cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8] D RI060_31870 cytochrome bc complex cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8] D RI060_31185 cytochrome c K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8] D RI060_32540 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RI060_31165 cytochrome c oxidase subunit 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9] D RI060_31180 heme-copper oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D RI060_31160 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D RI060_02285 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D RI060_31155 coxB; cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D RI060_32555 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D RI060_21395 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RI060_21400 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RI060_12810 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D RI060_12800 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RI060_12805 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RI060_12815 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RI060_12795 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RI060_12830 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RI060_12820 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RI060_12825 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RI060_18185 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D RI060_22765 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RI060_27030 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:sjn00680] D RI060_42690 glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D RI060_30145 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_33880 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_42680 NAD-dependent formate dehydrogenase K00122 FDH; formate dehydrogenase [EC:1.17.1.9] D RI060_34020 cytochrome b/b6 domain-containing protein K00127 fdoI; formate dehydrogenase subunit gamma D RI060_12845 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_15500 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_39040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_12220 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_25270 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_01630 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_25085 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D RI060_15600 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RI060_19155 fbaA; class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RI060_38740 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RI060_14400 glpX; class II fructose-bisphosphatase K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D RI060_12535 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_31355 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_36625 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RI060_12545 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D RI060_12540 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D RI060_18780 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_08095 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_23255 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D RI060_27715 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_01605 C-terminal binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_11980 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_23805 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RI060_33305 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D RI060_01455 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] D RI060_24320 bifunctional FO biosynthesis protein CofGH K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32] D RI060_11715 cofC; 2-phospho-L-lactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105] D RI060_25610 cofD; 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] D RI060_25605 coenzyme F420-0:L-glutamate ligase K24998 fbiB; dehydro coenzyme F420 reductase / coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:1.3.8.17 6.3.2.31 6.3.2.34] C 00910 Nitrogen metabolism [PATH:sjn00910] D RI060_26005 nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D RI060_28895 molybdopterin-dependent oxidoreductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D RI060_28820 FAD-dependent oxidoreductase K00360 nasB; assimilatory nitrate reductase electron transfer subunit [EC:1.7.99.-] D RI060_28815 nirB; nitrite reductase large subunit NirB K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D RI060_28810 nirD; nitrite reductase small subunit NirD K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D RI060_28335 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D RI060_25805 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RI060_05675 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RI060_30575 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30695 glnII; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30905 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_34400 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_41955 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_05485 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_31835 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RI060_31840 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RI060_32225 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RI060_18770 SulP family inorganic anion transporter K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D RI060_28785 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D RI060_31490 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D RI060_37890 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D RI060_38445 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D RI060_01030 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D RI060_09225 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D RI060_03060 carbonic anhydrase family protein K01674 cah; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:sjn00920] D RI060_01410 TauD/TfdA family dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D RI060_16780 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_27805 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_36930 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_01750 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_01760 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_05665 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_08755 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_16785 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_27800 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_36940 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_01740 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_05605 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_08765 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_16790 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_27795 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_36935 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_01745 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_05610 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_08760 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_40255 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D RI060_01755 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D RI060_01775 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D RI060_01785 ssuE; NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D RI060_05615 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RI060_08750 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RI060_05620 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RI060_08745 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RI060_05625 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D RI060_08740 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D RI060_05630 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D RI060_08735 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D RI060_09930 bifunctional nitrate reductase/sulfite reductase flavoprotein subunit alpha K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D RI060_08725 nitrite/sulfite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1] D RI060_15775 DoxX family protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2] D RI060_24110 DoxX family protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2] D RI060_22920 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_01735 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_10360 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_38800 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D RI060_14950 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D RI060_01795 sfnG; dimethyl sulfone monooxygenase SfnG K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:sjn00061] D RI060_15075 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D RI060_29685 acyl carrier protein K02078 acpP; acyl carrier protein D RI060_36115 acyl carrier protein K02078 acpP; acyl carrier protein D RI060_03950 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D RI060_04740 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D RI060_08545 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D RI060_29695 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RI060_09150 peptidyl-prolyl cis-trans isomerase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RI060_20860 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_29690 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_04745 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_06875 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_08550 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_18270 ketoacyl-ACP synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_29680 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_03940 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_08540 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_17310 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_31885 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_33150 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_33265 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_35865 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_36155 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_37825 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_03910 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_07885 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_10825 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_05995 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D RI060_17300 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_28290 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_31295 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_33960 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_39950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_40495 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_41145 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_03540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_06945 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:sjn00071] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_35940 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_09455 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_33970 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D RI060_40100 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D RI060_03520 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D RI060_09805 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D RI060_26990 acyl-CoA dehydrogenase family protein K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D RI060_33645 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_37180 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_01670 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_17300 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_28290 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_31295 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_33960 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_39950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_40495 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_41145 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_03540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_06945 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_28935 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D RI060_31415 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D RI060_30145 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_33880 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_39975 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_02790 cytochrome P450 K14338 cypD_E; cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:sjn00561] D RI060_31210 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RI060_07390 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_14990 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RI060_06585 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D RI060_39920 dhaK; dihydroxyacetone kinase subunit DhaK K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D RI060_39915 dhaL; dihydroxyacetone kinase subunit DhaL K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D RI060_39910 PTS fructose transporter subunit IIA K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D RI060_34155 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D RI060_35545 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D RI060_33420 HAD hydrolase-like protein K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21] D RI060_31340 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_33565 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_34645 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_36560 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_34300 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D RI060_04320 wax ester/triacylglycerol synthase family O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75] D RI060_01900 alpha/beta hydrolase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D RI060_38570 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RI060_03395 ricin-type beta-trefoil lectin domain protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RI060_05700 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:sjn00564] D RI060_11705 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D RI060_15865 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D RI060_34150 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D RI060_31340 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_33565 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_34645 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_36560 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_34300 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D RI060_06140 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D RI060_21560 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_27705 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_32280 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_34650 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_35405 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_38120 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_07050 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_11240 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_30405 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RI060_18570 methyltransferase domain-containing protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D RI060_24300 methyltransferase domain-containing protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D RI060_11415 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D RI060_07385 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RI060_07380 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D RI060_34895 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D RI060_10850 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D RI060_35620 CDP-alcohol phosphatidyltransferase family protein K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D RI060_05795 iron-containing alcohol dehydrogenase family protein K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] C 00565 Ether lipid metabolism D RI060_06140 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism [PATH:sjn00600] D RI060_04370 discoidin domain-containing protein K01201 GBA; glucosylceramidase [EC:3.2.1.45] D RI060_02570 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_06325 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_07430 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_08380 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_28530 sialidase family protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D RI060_30470 sialidase family protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D RI060_06925 sialidase family protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D RI060_38570 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RI060_03395 ricin-type beta-trefoil lectin domain protein K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RI060_05700 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D RI060_15385 glycoside hydrolase family 20 protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_26075 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_26930 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_01390 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_04280 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:sjn00592] D RI060_35940 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_09455 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:sjn01040] D RI060_25080 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D RI060_05995 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D RI060_41825 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D RI060_41830 ferredoxin reductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase D RI060_26995 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D RI060_36865 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D RI060_03505 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:sjn00230] D RI060_41635 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RI060_25110 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RI060_22385 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RI060_22285 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D RI060_15655 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D RI060_22355 purL; phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D RI060_22345 purS; phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D RI060_22350 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RI060_22390 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D RI060_25455 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D RI060_25460 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D RI060_22300 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D RI060_36245 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RI060_15650 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RI060_34960 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RI060_22815 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D RI060_26620 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D RI060_15095 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D RI060_31550 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RI060_18165 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D RI060_15875 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RI060_15880 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RI060_27985 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RI060_26325 rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D RI060_37230 xanthine dehydrogenase family protein molybdopterin-binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D RI060_37860 xanthine dehydrogenase family protein molybdopterin-binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D RI060_37900 xanthine dehydrogenase family protein molybdopterin-binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D RI060_01840 xanthine dehydrogenase family protein molybdopterin-binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D RI060_03715 xanthine dehydrogenase family protein molybdopterin-binding subunit K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D RI060_37855 xanthine dehydrogenase family protein subunit M K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D RI060_37905 xanthine dehydrogenase family protein subunit M K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D RI060_01835 xanthine dehydrogenase family protein subunit M K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D RI060_03720 xanthine dehydrogenase family protein subunit M K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D RI060_37220 (2Fe-2S)-binding protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D RI060_37850 (2Fe-2S)-binding protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D RI060_37910 (2Fe-2S)-binding protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D RI060_01830 2Fe-2S iron-sulfur cluster-binding protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D RI060_03725 2Fe-2S iron-sulfur cluster-binding protein K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D RI060_15800 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RI060_35205 GuaB1 family IMP dehydrogenase-related protein K26110 guaB1; GMP reductase [EC:1.7.1.7] D RI060_35145 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D RI060_13580 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RI060_10580 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RI060_13585 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RI060_28930 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D RI060_34965 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RI060_10635 HD domain-containing protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RI060_17910 Ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D RI060_25285 Ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D RI060_02490 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D RI060_15040 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D RI060_19055 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RI060_31145 carbohydrate kinase family protein K00856 ADK; adenosine kinase [EC:2.7.1.20] D RI060_15185 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D RI060_16460 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D RI060_40725 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D RI060_28365 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D RI060_16205 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RI060_34880 HIT domain-containing protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D RI060_05625 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D RI060_08740 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D RI060_05615 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RI060_08750 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RI060_05620 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RI060_08745 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RI060_08015 pucL; urate oxidase K00365 uaZ; urate oxidase [EC:1.7.3.3] D RI060_08020 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D RI060_15390 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D RI060_08025 uraD; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D RI060_32140 aspartate/glutamate racemase family protein K16841 hpxA; allantoin racemase [EC:5.1.99.3] D RI060_07895 allB; allantoinase AllB K01466 allB; allantoinase [EC:3.5.2.5] D RI060_07890 alc; allantoicase K01477 alc; allantoicase [EC:3.5.3.4] D RI060_36530 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D RI060_36525 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D RI060_36520 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00240 Pyrimidine metabolism [PATH:sjn00240] D RI060_35125 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RI060_35120 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RI060_35105 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RI060_35110 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D RI060_35130 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D RI060_19160 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D RI060_35135 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D RI060_11425 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D RI060_27985 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RI060_15065 nucleoside triphosphate pyrophosphatase K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D RI060_33485 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D RI060_33560 cmk; (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D RI060_15145 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D RI060_22815 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D RI060_26620 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D RI060_22095 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D RI060_35100 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D RI060_32265 pseudouridine-5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D RI060_15240 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D RI060_39255 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D RI060_16510 hydrolase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RI060_17420 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RI060_19395 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D RI060_13580 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RI060_10580 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RI060_13585 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D RI060_18675 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D RI060_10295 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RI060_15235 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D RI060_10370 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D RI060_10920 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D RI060_07625 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D RI060_07630 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D RI060_07645 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D RI060_25390 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D RI060_14390 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:sjn00250] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_18055 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D RI060_39330 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D RI060_36135 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RI060_36375 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RI060_04970 lasso peptide isopeptide bond-forming cyclase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RI060_14835 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RI060_07990 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RI060_33500 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D RI060_39785 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D RI060_34620 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RI060_08150 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RI060_34625 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RI060_19055 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RI060_36245 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RI060_35105 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RI060_18215 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RI060_39580 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_07640 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_11160 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RI060_15825 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_36680 NADP-dependent succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_39590 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_40450 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_31835 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RI060_31840 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RI060_32225 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RI060_25805 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RI060_05675 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RI060_11930 pruA; L-glutamate gamma-semialdehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D RI060_30575 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30695 glnII; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30905 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_34400 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_41955 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_05485 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_35125 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RI060_35120 carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RI060_39790 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D RI060_22350 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RI060_13520 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_16085 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_26910 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_22385 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:sjn00260] D RI060_18960 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RI060_18955 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RI060_27610 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RI060_12900 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RI060_12890 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D RI060_12895 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RI060_23475 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RI060_38135 low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D RI060_41805 low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D RI060_04875 low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D RI060_12845 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_15500 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_39040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_12220 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_03280 D-glycerate dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D RI060_31210 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RI060_07390 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D RI060_23255 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D RI060_27715 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_01605 C-terminal binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_11980 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_23805 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RI060_33305 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D RI060_05530 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D RI060_05535 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D RI060_19855 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D RI060_08900 copper amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D RI060_35675 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D RI060_12210 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_12215 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein D RI060_05870 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3] D RI060_07385 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D RI060_39005 betA; choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D RI060_35500 GMC family oxidoreductase N-terminal domain-containing protein K17755 codA; choline oxidase [EC:1.1.3.17] D RI060_15595 aldehyde dehydrogenase family protein K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D RI060_39010 aldehyde dehydrogenase family protein K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D RI060_09315 aldehyde dehydrogenase family protein K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D RI060_11215 gamma-aminobutyraldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D RI060_11340 gamma-aminobutyraldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D RI060_39030 FAD-dependent oxidoreductase K00309 dmg; dimethylglycine oxidase [EC:1.5.3.10] D RI060_39600 solA; N-methyl-L-tryptophan oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1] D RI060_40415 solA; N-methyl-L-tryptophan oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1] D RI060_39050 sarcosine oxidase subunit alpha family protein K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D RI060_39045 sarcosine oxidase subunit beta family protein K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D RI060_39055 sarcosine oxidase subunit gamma family protein K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D RI060_25350 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D RI060_21325 cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D RI060_39090 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RI060_12225 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RI060_14930 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RI060_40930 threonine/serine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RI060_00970 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RI060_31785 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RI060_31780 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RI060_32990 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D RI060_10610 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D RI060_32995 ectA; diaminobutyrate acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] D RI060_32985 ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108] D RI060_32980 thpD; ectoine hydroxylase K10674 ectD; ectoine hydroxylase [EC:1.14.11.55] D RI060_26950 desA; lysine decarboxylase DesA K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86] D RI060_31960 aminotransferase class V-fold PLP-dependent enzyme K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86] D RI060_39605 succinylglutamate desuccinylase/aspartoacylase family protein K15784 doeB; N2-acetyl-L-2,4-diaminobutanoate deacetylase [EC:3.5.1.125] C 00270 Cysteine and methionine metabolism [PATH:sjn00270] D RI060_38800 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D RI060_21325 cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D RI060_02190 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RI060_25350 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D RI060_08510 mmuM; homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10] D RI060_34170 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RI060_03110 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RI060_35160 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RI060_19175 polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D RI060_24770 S-methyl-5'-thioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D RI060_31550 pgeF; peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D RI060_05445 amidohydrolase family protein K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D RI060_25740 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D RI060_36170 PLP-dependent transferase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D RI060_26530 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_26535 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_25680 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RI060_13465 pyridoxal-phosphate dependent enzyme K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D RI060_32690 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D RI060_18960 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RI060_18955 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RI060_27610 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RI060_12900 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RI060_14950 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D RI060_34775 aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_11905 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_04020 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_22920 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_01735 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_10360 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_15600 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D RI060_39090 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RI060_12225 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D RI060_09765 pyridoxal-phosphate dependent enzyme K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D RI060_27715 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_01605 C-terminal binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_11980 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_23805 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RI060_10015 pyridoxal-phosphate dependent enzyme K22847 cysK2; S-sulfo-L-cysteine synthase (3-phospho-L-serine-dependent) [EC:2.8.5.1] C 00280 Valine, leucine and isoleucine degradation [PATH:sjn00280] D RI060_34775 aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_11905 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_22400 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00271 vdh; valine dehydrogenase (NAD+) [EC:1.4.1.23] D RI060_20600 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_20670 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_04725 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_20595 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_20665 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_04730 transketolase C-terminal domain-containing protein K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_20590 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RI060_20660 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_33970 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D RI060_40100 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D RI060_03520 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D RI060_09805 acyl-CoA dehydrogenase family protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D RI060_26965 acyl-CoA dehydrogenase family protein K11410 acdH; short-chain 2-methylacyl-CoA dehydrogenase [EC:1.3.8.5] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_35940 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_09455 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_23885 biotin carboxylase N-terminal domain-containing protein K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D RI060_15050 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RI060_01885 acyl-CoA carboxylase subunit beta K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D RI060_15075 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D RI060_12675 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D RI060_08135 methylmalonyl-CoA mutase family protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D RI060_08140 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D RI060_15335 methylmalonyl-CoA mutase family protein K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D RI060_38760 NAD(P)-dependent oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D RI060_27280 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RI060_05360 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_29345 acyl-CoA synthetase K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-] D RI060_11160 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RI060_26975 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D RI060_26980 carboxyl transferase domain-containing protein K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D RI060_26970 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D RI060_06060 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D RI060_06065 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D RI060_30285 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D RI060_35585 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:sjn00290] D RI060_14930 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RI060_40930 threonine/serine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RI060_00970 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D RI060_11740 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RI060_11735 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RI060_11910 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D RI060_27020 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RI060_11995 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RI060_11990 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RI060_11985 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RI060_17895 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RI060_34775 aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_11905 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_04540 valine--pyruvate transaminase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D RI060_14835 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RI060_07990 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RI060_12280 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D RI060_28505 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D RI060_11895 cimA; citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:sjn00300] D RI060_12900 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RI060_18960 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RI060_18955 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RI060_27610 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RI060_28535 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_32645 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_32815 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_03340 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_10915 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_10940 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D RI060_32630 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D RI060_34580 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RI060_19190 pyridoxal phosphate-dependent aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D RI060_14095 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RI060_10640 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RI060_12905 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RI060_25380 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RI060_03020 type III PLP-dependent enzyme K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RI060_09760 Y4yA family PLP-dependent enzyme K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RI060_17720 PLP-dependent aminotransferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D RI060_06475 saccharopine dehydrogenase K00290 LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7] D RI060_31510 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RI060_31515 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:sjn00310] D RI060_06475 saccharopine dehydrogenase K00290 LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_33645 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_37180 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_01670 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_35240 NAD(P)/FAD-dependent oxidoreductase K00468 davB; lysine 2-monooxygenase [EC:1.13.12.2] D RI060_35235 carbon-nitrogen hydrolase family protein K01506 davA; 5-aminopentanamidase [EC:3.5.1.30] D RI060_11160 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RI060_15825 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_36680 NADP-dependent succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_39590 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_40450 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_22560 lhgO; L-2-hydroxyglutarate oxidase K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:sjn00220] D RI060_18595 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D RI060_09840 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D RI060_34620 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RI060_08150 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RI060_34625 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RI060_39700 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] D RI060_03155 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] D RI060_05895 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] D RI060_36585 arginine deiminase-related protein K27545 argZ; arginine dihydrolase [EC:3.5.3.27] D RI060_05595 amidinotransferase K27545 argZ; arginine dihydrolase [EC:3.5.3.27] D RI060_36530 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D RI060_36525 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D RI060_36520 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D RI060_09845 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D RI060_39790 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D RI060_22350 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RI060_30575 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30695 glnII; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30905 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_34400 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_41955 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_05485 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_25805 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RI060_05675 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_14835 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RI060_07990 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RI060_18025 amino-acid N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D RI060_34570 argJ; bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D RI060_14120 GNAT family N-acetyltransferase K22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1] D RI060_34575 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D RI060_04980 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D RI060_34565 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D RI060_34580 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:sjn00330] D RI060_06485 creatininase family protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D RI060_16510 hydrolase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RI060_17420 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RI060_05985 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D RI060_41055 ornithine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D RI060_19175 polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_23405 GNAT family N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D RI060_19855 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D RI060_27015 speB; agmatinase K25365 gbh; guanidinobutyrase / D-arginase [EC:3.5.3.7 3.5.3.10] D RI060_39360 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04000 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04285 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_16680 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_36585 arginine deiminase-related protein K27545 argZ; arginine dihydrolase [EC:3.5.3.27] D RI060_05595 amidinotransferase K27545 argZ; arginine dihydrolase [EC:3.5.3.27] D RI060_39700 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] D RI060_03155 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] D RI060_05895 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] D RI060_36580 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D RI060_05720 aspartate aminotransferase family protein K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D RI060_17860 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D RI060_11935 proline dehydrogenase family protein K00318 PRODH; proline dehydrogenase [EC:1.5.5.2] D RI060_11930 pruA; L-glutamate gamma-semialdehyde dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D RI060_28135 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D RI060_28145 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D RI060_20100 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_06215 proline racemase family protein K01777 prdF; proline racemase [EC:5.1.1.4] D RI060_05870 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3] C 00340 Histidine metabolism [PATH:sjn00340] D RI060_35315 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D RI060_35310 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D RI060_31745 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D RI060_31715 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24] D RI060_31710 hisH; imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D RI060_31725 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D RI060_31700 hisB; imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D RI060_21385 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_31695 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_33020 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_13675 hisN; histidinol-phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D RI060_31690 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D RI060_15020 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D RI060_28420 aromatic amino acid ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D RI060_36100 aromatic amino acid ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D RI060_25385 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D RI060_25400 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_19855 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D RI060_04035 egtD; L-histidine N(alpha)-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] D RI060_04025 egtB; ergothioneine biosynthesis protein EgtB K18912 egtB; gamma-glutamyl hercynylcysteine S-oxide synthase [EC:1.14.99.50] D RI060_04030 egtC; ergothioneine biosynthesis protein EgtC K07008 egtC; gamma-glutamyl hercynylcysteine S-oxide hydrolase [EC:3.5.1.118] C 00350 Tyrosine metabolism [PATH:sjn00350] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_21385 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_31695 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_33020 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_26205 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D RI060_33830 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D RI060_16760 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D RI060_27375 tyrosinase family protein K00505 TYR; tyrosinase [EC:1.14.18.1] D RI060_40870 tyrosinase family protein K00505 TYR; tyrosinase [EC:1.14.18.1] D RI060_19855 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D RI060_08900 copper amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D RI060_30145 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_33880 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_39975 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D RI060_30640 5-carboxymethyl-2-hydroxymuconate Delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D RI060_15825 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_36680 NADP-dependent succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_39590 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_40450 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_02715 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D RI060_32355 maleylpyruvate isomerase family mycothiol-dependent enzyme K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4] D RI060_03375 maleylpyruvate isomerase family mycothiol-dependent enzyme K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4] C 00360 Phenylalanine metabolism [PATH:sjn00360] D RI060_08900 copper amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D RI060_19855 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D RI060_39530 paaK; phenylacetate--CoA ligase PaaK K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D RI060_39540 paaA; 1,2-phenylacetyl-CoA epoxidase subunit PaaA K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D RI060_39545 paaB; 1,2-phenylacetyl-CoA epoxidase subunit PaaB K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D RI060_39550 paaC; 1,2-phenylacetyl-CoA epoxidase subunit PaaC K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D RI060_39555 paaD; 1,2-phenylacetyl-CoA epoxidase subunit PaaD K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D RI060_39560 paaE; 1,2-phenylacetyl-CoA epoxidase subunit PaaE K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D RI060_14070 enoyl-CoA hydratase-related protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D RI060_24095 enoyl-CoA hydratase-related protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D RI060_40095 enoyl-CoA hydratase/isomerase family protein K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_12740 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_20685 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_34505 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_39925 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_01655 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_07345 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_21385 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_31695 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_33020 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_02715 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D RI060_26205 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D RI060_39355 FAD-dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D RI060_01035 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D RI060_39360 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04000 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04285 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_16680 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_32590 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D RI060_38985 bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D RI060_28935 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D RI060_31415 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D RI060_15540 FAD-dependent monooxygenase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D RI060_30290 bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D RI060_10755 FAD-dependent monooxygenase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] C 00380 Tryptophan metabolism [PATH:sjn00380] D RI060_19140 tryptophan 2,3-dioxygenase family protein K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D RI060_19135 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_33645 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_37180 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_01670 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_19855 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_02790 cytochrome P450 K14338 cypD_E; cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] D RI060_39360 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04000 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04285 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_16680 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_39105 catalase K03781 katE; catalase [EC:1.11.1.6] D RI060_08050 catalase K03781 katE; catalase [EC:1.11.1.6] D RI060_01035 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D RI060_08970 multicopper oxidase domain-containing protein K20219 phsA; o-aminophenol oxidase [EC:1.10.3.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sjn00400] D RI060_31365 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RI060_36095 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RI060_35070 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D RI060_32330 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D RI060_06435 TIM barrel protein K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118] D RI060_06440 shikimate dehydrogenase K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24] D RI060_35065 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D RI060_13655 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D RI060_42190 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D RI060_35060 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D RI060_31750 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RI060_31200 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D RI060_31715 priA; bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24] D RI060_31770 trpC; indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D RI060_31785 trpA; tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RI060_31780 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RI060_31940 chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5] D RI060_15805 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D RI060_33550 aroH; chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5] D RI060_33555 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D RI060_21475 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_21385 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_31695 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_33020 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:sjn00410] D RI060_04365 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D RI060_18215 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RI060_39580 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_07640 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_11160 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RI060_19040 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55] D RI060_08900 copper amine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18060 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D RI060_07625 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D RI060_07630 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D RI060_07645 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D RI060_25390 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_27280 mmsA; CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D RI060_05360 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:sjn00430] D RI060_18215 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RI060_07510 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RI060_07670 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RI060_01410 TauD/TfdA family dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D RI060_33500 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D RI060_19040 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55] D RI060_25805 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D RI060_12540 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D RI060_12545 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:sjn00440] D RI060_24680 N-acetyltransferase family protein K03823 pat; phosphinothricin acetyltransferase [EC:2.3.1.183] C 00450 Selenocompound metabolism [PATH:sjn00450] D RI060_14950 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D RI060_02190 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RI060_34170 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RI060_03110 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RI060_21325 cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D RI060_36170 PLP-dependent transferase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D RI060_32600 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D RI060_09770 aminotransferase class V-fold PLP-dependent enzyme K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D RI060_21165 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RI060_40980 FAD-dependent oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RI060_05615 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RI060_08750 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RI060_05620 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RI060_08745 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RI060_20420 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_04860 class I tRNA ligase family protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_05570 class I tRNA ligase family protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:sjn00460] D RI060_29660 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_35985 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_04380 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_09170 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_11140 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_26850 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_28490 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_41975 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_07510 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RI060_07670 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RI060_12845 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_15500 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_39040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_12220 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:sjn00470] D RI060_16040 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RI060_11700 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RI060_28900 amino acid adenylation domain-containing protein K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D RI060_39790 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D RI060_22350 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RI060_38850 aspartate/glutamate racemase family protein K01776 murI; glutamate racemase [EC:5.1.1.3] D RI060_31525 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RI060_10010 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D RI060_39330 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D RI060_10640 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RI060_12905 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RI060_25380 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RI060_03020 type III PLP-dependent enzyme K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RI060_09760 Y4yA family PLP-dependent enzyme K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RI060_05870 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3] D RI060_27015 speB; agmatinase K25365 gbh; guanidinobutyrase / D-arginase [EC:3.5.3.7 3.5.3.10] D RI060_06215 proline racemase family protein K01777 prdF; proline racemase [EC:5.1.1.4] D RI060_06225 NAD(P)/FAD-dependent oxidoreductase K22549 lhpC; D-hydroxyproline dehydrogenase subunit alpha [EC:1.5.99.-] D RI060_06235 FAD-binding oxidoreductase K21061 lhpB; D-hydroxyproline dehydrogenase subunit beta [EC:1.5.99.-] D RI060_06220 dihydrodipicolinate synthase family protein K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D RI060_39355 FAD-dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:sjn00480] D RI060_07510 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RI060_07670 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RI060_35535 hydantoinase B/oxoprolinase family protein K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] D RI060_35465 5-oxoprolinase subunit PxpA K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D RI060_03270 5-oxoprolinase subunit PxpA K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D RI060_41155 glutamate--cysteine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D RI060_04020 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D RI060_31000 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RI060_20835 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RI060_27600 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RI060_27690 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RI060_31950 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RI060_05115 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D RI060_21100 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RI060_04355 gndA; NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RI060_06420 gnd; decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RI060_32525 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RI060_06405 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RI060_18235 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D RI060_24435 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D RI060_19175 polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis [PATH:sjn00515] D RI060_24960 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00514 Other types of O-glycan biosynthesis [PATH:sjn00514] D RI060_24960 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:sjn00511] D RI060_28530 sialidase family protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D RI060_30470 sialidase family protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D RI060_06925 sialidase family protein K01186 NEU1; sialidase-1 [EC:3.2.1.18] D RI060_02570 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_06325 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_07430 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_08380 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D RI060_15385 glycoside hydrolase family 20 protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_26075 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_26930 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_01390 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_04280 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_06285 glycoside hydrolase family 38 C-terminal domain-containing protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D RI060_09440 glycoside hydrolase family 2 protein K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] D RI060_03285 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D RI060_04275 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D RI060_06280 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D RI060_40185 glycoside hydrolase N-terminal domain-containing protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51] D RI060_04370 discoidin domain-containing protein K01201 GBA; glucosylceramidase [EC:3.2.1.45] C 00540 Lipopolysaccharide biosynthesis [PATH:sjn00540] D RI060_08205 HAD-IIIA family hydrolase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] C 00542 O-Antigen repeat unit biosynthesis [PATH:sjn00542] D RI060_12840 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RI060_19310 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:sjn00541] D RI060_24800 galU; UTP--glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D RI060_17795 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_25030 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_25845 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_05810 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RI060_25525 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RI060_03310 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RI060_18415 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RI060_02405 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RI060_18250 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_41440 NAD-dependent epimerase/dehydratase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_02400 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_36305 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RI060_02385 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RI060_02395 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RI060_36340 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D RI060_25665 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D RI060_15100 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RI060_25650 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D RI060_25115 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D RI060_15285 N-acetylneuraminate synthase family protein K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56] D RI060_15870 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D RI060_04500 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D RI060_09480 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] C 00550 Peptidoglycan biosynthesis [PATH:sjn00550] D RI060_26045 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RI060_09745 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RI060_16465 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RI060_09200 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RI060_31525 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RI060_31510 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RI060_11700 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RI060_31515 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RI060_28615 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RI060_35930 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_39765 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_22700 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_31520 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RI060_31535 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RI060_14445 transglycosylase domain-containing protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RI060_28005 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RI060_31505 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RI060_13215 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D RI060_20945 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D RI060_32925 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D RI060_15455 DUF5136 domain-containing protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_20575 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_24410 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_18180 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D RI060_36635 MurT ligase domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D RI060_36630 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:sjn00552] D RI060_35930 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_39765 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_22700 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_12840 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RI060_19310 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RI060_25825 CDP-glycerol glycerophosphotransferase family protein K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12] D RI060_28900 amino acid adenylation domain-containing protein K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D RI060_02380 glycosyltransferase family A protein K22708 tarS; poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase [EC:2.4.1.355] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:sjn00543] D RI060_12840 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RI060_19310 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:sjn00730] D RI060_21365 thiC; phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D RI060_11680 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D RI060_31150 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_12130 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_31405 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D RI060_05725 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RI060_09500 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RI060_31395 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D RI060_31425 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D RI060_11685 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D RI060_13660 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RI060_08325 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RI060_16205 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:sjn00740] D RI060_22520 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D RI060_35300 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D RI060_06480 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D RI060_35305 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D RI060_35290 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D RI060_10995 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D RI060_01785 ssuE; NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D RI060_17355 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:sjn00750] D RI060_23910 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D RI060_24140 pyridoxal 5'-phosphate synthase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D RI060_18420 aldo/keto reductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D RI060_40695 oxidoreductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D RI060_01925 aldo/keto reductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D RI060_23805 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D RI060_12895 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RI060_23475 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RI060_34915 pdxS; pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D RI060_34920 pdxT; pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:sjn00760] D RI060_18055 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D RI060_31125 nadA; quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72] D RI060_18050 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D RI060_00385 nadC; carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D RI060_26255 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D RI060_15095 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D RI060_22815 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D RI060_26620 HAD-IIA family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D RI060_28175 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D RI060_13825 nudC; NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D RI060_30545 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D RI060_10125 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D RI060_10845 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D RI060_26250 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D RI060_00885 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D RI060_07405 Sir2 family NAD-dependent protein deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D RI060_33455 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D RI060_08160 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D RI060_08155 pntB; Re/Si-specific NAD(P)(+) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D RI060_26730 aspartate/glutamate racemase family protein K01799 nicE; maleate isomerase [EC:5.2.1.1] D RI060_15825 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_36680 NADP-dependent succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_39590 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D RI060_40450 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:sjn00770] D RI060_27020 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RI060_11995 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D RI060_11990 ilvN; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RI060_11985 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RI060_17895 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RI060_30510 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D RI060_29850 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D RI060_06890 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D RI060_08420 2-dehydropantoate 2-reductase N-terminal domain-containing protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D RI060_18060 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D RI060_16100 coaA; type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D RI060_18045 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D RI060_35155 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D RI060_11645 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D RI060_32085 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D RI060_16070 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D RI060_27670 4'-phosphopantetheinyl transferase superfamily protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D RI060_34775 aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_11905 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_07625 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D RI060_07630 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D RI060_07645 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6] D RI060_25390 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D RI060_04365 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:sjn00780] D RI060_29680 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_03940 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_08540 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_17310 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_31885 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_33150 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_33265 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_35865 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_36155 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_37825 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_03910 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_07885 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_10825 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_36465 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D RI060_36455 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D RI060_36450 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D RI060_36460 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6] D RI060_15045 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:sjn00785] D RI060_30930 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D RI060_30925 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_29760 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RI060_30980 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D RI060_30990 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RI060_40050 2-oxo acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RI060_13320 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D RI060_20600 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_20670 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_04725 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D RI060_20595 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_20665 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_04730 transketolase C-terminal domain-containing protein K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D RI060_20590 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RI060_20660 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D RI060_35675 gcvP; aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D RI060_12210 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D RI060_12215 gcvH; glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:sjn00790] D RI060_18155 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D RI060_06620 GTP cyclohydrolase I FolE2 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D RI060_28110 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_30360 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_31620 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_36180 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_41465 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_18140 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D RI060_18145 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D RI060_14085 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D RI060_18130 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D RI060_38980 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D RI060_27975 Mur ligase family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D RI060_22520 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D RI060_35300 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D RI060_06480 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D RI060_20970 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D RI060_34770 chorismate-binding protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D RI060_15525 pabB; aminodeoxychorismate synthase component I K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85] D RI060_06625 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RI060_06990 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D RI060_06630 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RI060_06635 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RI060_33230 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RI060_24810 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RI060_13740 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RI060_20650 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RI060_24805 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] C 00670 One carbon pool by folate [PATH:sjn00670] D RI060_15615 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RI060_39035 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D RI060_12845 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_15500 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_39040 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_12220 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RI060_15655 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D RI060_15650 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RI060_35175 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RI060_05055 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RI060_12210 gcvT; glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D RI060_34170 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D RI060_10920 thyX; FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D RI060_23980 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D RI060_39065 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D RI060_31430 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D RI060_24795 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:sjn00860] D RI060_11780 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RI060_17760 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D RI060_17460 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RI060_36300 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RI060_17740 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RI060_17755 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D RI060_41215 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D RI060_26010 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D RI060_09375 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D RI060_04445 FAD-dependent oxidoreductase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D RI060_09340 hemG; protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D RI060_10340 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D RI060_09335 hemQ; hydrogen peroxide-dependent heme synthase K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5] D RI060_17750 bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D RI060_34710 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D RI060_32540 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RI060_32555 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D RI060_33025 sirohydrochlorin chelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D RI060_01525 precorrin-2 C(20)-methyltransferase K13540 cobIJ; precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase [EC:2.1.1.130 2.1.1.131] D RI060_01515 cobG; precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D RI060_33030 cobalamin biosynthesis protein K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D RI060_01540 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D RI060_05395 cobF; precorrin-6A synthase (deacetylating) K02228 cobF; precorrin-6A synthase [EC:2.1.1.152] D RI060_01530 cobalt-precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D RI060_01535 cobalt-precorrin-5B (C(1))-methyltransferase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D RI060_34700 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D RI060_01545 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D RI060_01520 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D RI060_33035 cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D RI060_01510 cobN; cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D RI060_12760 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D RI060_33040 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D RI060_33050 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D RI060_33055 cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D RI060_31060 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D RI060_31035 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D RI060_31050 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D RI060_34705 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D RI060_30175 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73] D RI060_33045 putative cobaltochelatase K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1] D RI060_30450 biliverdin-producing heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20] D RI060_19255 TIGR03618 family F420-dependent PPOX class oxidoreductase K23825 K23825; F420H(2)-dependent biliverdin reductase [EC:1.3.98.-] D RI060_39270 glycoside hydrolase family 2 TIM barrel-domain containing protein K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D RI060_31375 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:sjn00130] D RI060_17365 mqnP; menaquinone biosynthesis prenyltransferase MqnP K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D RI060_17370 menaquinone biosynthesis decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D RI060_17355 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RI060_01135 methyltransferase domain-containing protein K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D RI060_16900 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D RI060_17260 menaquinone biosynthesis protein K11782 mqnA; chorismate dehydratase [EC:4.2.1.151] D RI060_17345 mqnE; aminofutalosine synthase MqnE K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D RI060_11235 adenosine deaminase K18286 add; aminodeoxyfutalosine deaminase [EC:3.5.4.40] D RI060_23645 futalosine hydrolase K11783 mqnB; futalosine hydrolase [EC:3.2.2.26] D RI060_16920 mqnC; cyclic dehypoxanthinyl futalosine synthase K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1] D RI060_23640 1,4-dihydroxy-6-naphthoate synthase K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29] D RI060_16640 SDR family oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D RI060_26205 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:sjn00900] D RI060_05725 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RI060_09500 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D RI060_11080 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D RI060_23305 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D RI060_24990 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D RI060_23310 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D RI060_05730 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D RI060_11070 ispG; flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D RI060_14375 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17355 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RI060_05820 idi; isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D RI060_13455 family 2 encapsulin nanocompartment cargo protein polyprenyl transferase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RI060_26425 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RI060_05750 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RI060_40935 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RI060_14505 isoprenyl transferase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] D RI060_28615 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:sjn00909] D RI060_13600 cytochrome P450 K12645 CYP170A; epi-isozizaene 5-monooxygenase / beta-farnesene synthase [EC:1.14.15.39 4.2.3.47] D RI060_13605 multidrug MFS transporter K10156 eizS; epi-isozizaene synthase [EC:4.2.3.37] D RI060_08975 terpene synthase family protein K10187 cyc2; germacradienol/geosmin synthase [EC:4.2.3.22 4.2.3.75 4.1.99.16] D RI060_05745 shc; squalene--hopene cyclase K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129] C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:sjn00906] D RI060_00300 squalene/phytoene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D RI060_05765 hpnD; presqualene diphosphate synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:sjn00903] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_17530 alpha/beta hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:sjn00907] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_26970 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D RI060_35940 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_09455 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures [PATH:sjn01052] D RI060_20875 3-hydroxyacyl-CoA dehydrogenase family protein K16024 asm13; methoxymalonate biosynthesis protein D RI060_20870 acyl carrier protein K16025 asm14; methoxymalonate biosynthesis acyl carrier protein D RI060_20865 acyl-CoA dehydrogenase family protein K16026 asm15; methoxymalonate biosynthesis protein C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides D RI060_18255 activator-dependent family glycosyltransferase K24529 mycB; protomycinolide IV desosaminyltransferase [EC:2.4.1.-] D RI060_18360 activator-dependent family glycosyltransferase K24529 mycB; protomycinolide IV desosaminyltransferase [EC:2.4.1.-] C 01051 Biosynthesis of ansamycins [PATH:sjn01051] D RI060_32535 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RI060_06395 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RI060_07210 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D RI060_20875 3-hydroxyacyl-CoA dehydrogenase family protein K16024 asm13; methoxymalonate biosynthesis protein D RI060_20870 acyl carrier protein K16025 asm14; methoxymalonate biosynthesis acyl carrier protein D RI060_20865 acyl-CoA dehydrogenase family protein K16026 asm15; methoxymalonate biosynthesis protein C 01059 Biosynthesis of enediyne antibiotics [PATH:sjn01059] D RI060_32725 alpha/beta fold hydrolase K21159 sgcF; epoxide hydrolase D RI060_40830 epoxide hydrolase K21159 sgcF; epoxide hydrolase D RI060_39175 AMP-binding protein K16431 cepH; FAD-dependent halogenase [EC:1.14.19.-] D RI060_20750 cytochrome P450 K20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31] D RI060_41370 cytochrome P450 K20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31] D RI060_09015 cytochrome P450 K20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31] D RI060_13875 NAD-dependent epimerase/dehydratase family protein K21214 ncsC4; NDP-hexose 4-ketoreductase D RI060_18310 NAD(P)-dependent oxidoreductase K21214 ncsC4; NDP-hexose 4-ketoreductase D RI060_04570 NAD-dependent epimerase/dehydratase K21214 ncsC4; NDP-hexose 4-ketoreductase C 01056 Biosynthesis of type II polyketide backbone [PATH:sjn01056] D RI060_18280 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K05551 actI1; minimal PKS ketosynthase (KS/KS alpha) [EC:2.3.1.- 2.3.1.260 2.3.1.235] D RI060_18275 ketosynthase chain-length factor K05552 actI2; minimal PKS chain-length factor (CLF/KS beta) [EC:2.3.1.- 2.3.1.260 2.3.1.235] D RI060_18410 acyl carrier protein K05553 actI3; minimal PKS acyl carrier protein D RI060_18350 SDR family NAD(P)-dependent oxidoreductase K12420 actIII; ketoreductase [EC:1.1.1.-] C 01057 Biosynthesis of type II polyketide products [PATH:sjn01057] D RI060_37185 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K05556 actVI1; ketoreductase RED1 [EC:1.1.1.-] D RI060_14550 hypothetical protein K14628 actVI2; enoyl reductase D RI060_18330 cyclase family protein K14250 oxyN; cyclase D RI060_18285 antibiotic biosynthesis monooxygenase family protein K15941 snoaB; deoxynogalonate / 12-deoxyaklanonic acid monooxygenase [EC:1.13.12.22 1.13.12.-] D RI060_18400 methyltransferase domain-containing protein K15942 snoaC; O-methyltransferase / aklanonic acid methyltransferase [EC:2.1.1.- 2.1.1.288] D RI060_18395 ester cyclase K15943 snoaL; nogalonic acid methyl ester cyclase / aklanonic acid methyl ester cyclase [EC:5.5.1.26 5.5.1.23] D RI060_18340 SDR family oxidoreductase K15944 snoaF; nogalaviketone/aklaviketone reductase [EC:1.1.1.- 1.1.1.362] D RI060_18375 FAD-dependent oxidoreductase K15950 dnrF; aklavinone 12-hydroxylase [EC:1.14.13.180] D RI060_18385 alpha/beta fold hydrolase K15957 rdmC; aclacinomycin methylesterase [EC:3.1.1.95] C 00253 Tetracycline biosynthesis [PATH:sjn00253] D RI060_18280 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K05551 actI1; minimal PKS ketosynthase (KS/KS alpha) [EC:2.3.1.- 2.3.1.260 2.3.1.235] D RI060_18275 ketosynthase chain-length factor K05552 actI2; minimal PKS chain-length factor (CLF/KS beta) [EC:2.3.1.- 2.3.1.260 2.3.1.235] D RI060_18410 acyl carrier protein K05553 actI3; minimal PKS acyl carrier protein D RI060_18350 SDR family NAD(P)-dependent oxidoreductase K12420 actIII; ketoreductase [EC:1.1.1.-] D RI060_18330 cyclase family protein K14250 oxyN; cyclase C 00523 Polyketide sugar unit biosynthesis [PATH:sjn00523] D RI060_18415 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RI060_02405 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RI060_18250 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_41440 NAD-dependent epimerase/dehydratase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_02400 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_36305 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RI060_02385 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RI060_02395 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D RI060_37350 NAD-dependent epimerase/dehydratase family protein K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25] D RI060_18380 class I SAM-dependent methyltransferase K13311 desVI; dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucopyranose N,N-dimethyltransferase [EC:2.1.1.234] D RI060_18315 NDP-hexose 2,3-dehydratase family protein K16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159] D RI060_04580 NDP-hexose 2,3-dehydratase family protein K16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159] D RI060_04585 aldo/keto reductase K13315 eryBII; NDP-hexose C3-ketoreductase / dTDP-4-oxo-2-deoxy-alpha-D-pentos-2-ene 2,3-reductase [EC:1.1.1.-] D RI060_18305 dTDP-4-dehydrorhamnose 3,5-epimerase family protein K16438 evaD; 5-epimerase [EC:5.1.3.-] D RI060_04590 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K16438 evaD; 5-epimerase [EC:5.1.3.-] D RI060_04575 TylF/MycF/NovP-related O-methyltransferase K19856 aveBVII; 3-O-methyltransferase [EC:2.1.1.-] D RI060_18370 Gfo/Idh/MocA family oxidoreductase K13327 spnN; dTDP-3,4-didehydro-2,6-dideoxy-alpha-D-glucose 3-reductase [EC:1.1.1.384] D RI060_18355 rfbH; lipopolysaccharide biosynthesis protein RfbH K13328 spnQ; dTDP-4-dehydro-2,6-dideoxy-D-glucose 3-dehydratase [EC:4.2.1.164] D RI060_18320 DegT/DnrJ/EryC1/StrS family aminotransferase K16436 evaB; dTDP-3-amino-2,3,6-trideoxy-4-keto-D-glucose/dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose/dTDP-2,6-dideoxy-D-kanosamine transaminase [EC:2.6.1.- 2.6.1.106] D RI060_18325 class I SAM-dependent methyltransferase K21335 calS10; dTDP-4-amino-2,4-dideoxy-beta-L-xylose N-methyltransferase [EC:2.1.1.-] C 01054 Nonribosomal peptide structures [PATH:sjn01054] D RI060_39330 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics [PATH:sjn01055] D RI060_39175 AMP-binding protein K16431 cepH; FAD-dependent halogenase [EC:1.14.19.-] D RI060_18250 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_41440 NAD-dependent epimerase/dehydratase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_02400 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_18315 NDP-hexose 2,3-dehydratase family protein K16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159] D RI060_04580 NDP-hexose 2,3-dehydratase family protein K16435 evaA; dTDP-4-dehydro-6-deoxy-alpha-D-glucopyranose 2,3-dehydratase [EC:4.2.1.159] D RI060_18320 DegT/DnrJ/EryC1/StrS family aminotransferase K16436 evaB; dTDP-3-amino-2,3,6-trideoxy-4-keto-D-glucose/dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose/dTDP-2,6-dideoxy-D-kanosamine transaminase [EC:2.6.1.- 2.6.1.106] D RI060_18305 dTDP-4-dehydrorhamnose 3,5-epimerase family protein K16438 evaD; 5-epimerase [EC:5.1.3.-] D RI060_04590 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K16438 evaD; 5-epimerase [EC:5.1.3.-] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:sjn00946] D RI060_29660 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_35985 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_04380 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_09170 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_11140 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_26850 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_28490 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_41975 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_37265 family 78 glycoside hydrolase catalytic domain K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism D RI060_08015 pucL; urate oxidase K00365 uaZ; urate oxidase [EC:1.7.3.3] C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis [PATH:sjn00311] D RI060_39845 acetylxylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41] D RI060_09575 acetylxylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41] D RI060_05870 FAD-dependent oxidoreductase K00273 DAO; D-amino-acid oxidase [EC:1.4.3.3] D RI060_22135 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D RI060_24790 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D RI060_20180 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RI060_36445 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RI060_00530 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:sjn00332] D RI060_28135 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D RI060_28145 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:sjn00261] D RI060_18620 MbtH family NRPS accessory protein K05375 mbtH; MbtH protein D RI060_04720 MbtH family protein K05375 mbtH; MbtH protein D RI060_04995 MbtH family protein K05375 mbtH; MbtH protein D RI060_05615 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RI060_08750 GTP-binding protein K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D RI060_05620 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RI060_08745 cysD; sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D RI060_18960 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RI060_18955 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RI060_27610 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RI060_28535 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_32645 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_32815 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_03340 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_10915 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RI060_10940 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:sjn00521] D RI060_23445 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_31320 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_38205 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_07815 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_41635 pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D RI060_21210 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D RI060_06830 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D RI060_40180 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RI060_10335 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RI060_42060 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_01980 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_05300 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_05315 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_07825 Gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D RI060_18415 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RI060_02405 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RI060_18250 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_41440 NAD-dependent epimerase/dehydratase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_02400 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_36305 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RI060_02385 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RI060_02395 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D RI060_23445 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_31320 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D RI060_38205 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D RI060_07815 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:sjn00525] D RI060_18415 rfbA; glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RI060_02405 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RI060_18250 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_41440 NAD-dependent epimerase/dehydratase family protein K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_02400 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RI060_10250 adenosine kinase K19978 acbK; acarbose 7IV-phosphotransferase [EC:2.7.1.187] C 00401 Novobiocin biosynthesis [PATH:sjn00401] D RI060_33555 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_21385 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_31695 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_33020 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis D RI060_18305 dTDP-4-dehydrorhamnose 3,5-epimerase family protein K16438 evaD; 5-epimerase [EC:5.1.3.-] D RI060_04590 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K16438 evaD; 5-epimerase [EC:5.1.3.-] C 00405 Phenazine biosynthesis [PATH:sjn00405] D RI060_31360 anthranilate synthase family protein K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86] D RI060_31750 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D RI060_29695 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RI060_09150 peptidyl-prolyl cis-trans isomerase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RI060_17310 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_31885 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_33150 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_33265 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_35865 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_36155 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_37825 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_03910 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_07885 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_10825 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:sjn00998] D RI060_29685 acyl carrier protein K02078 acpP; acyl carrier protein D RI060_36115 acyl carrier protein K02078 acpP; acyl carrier protein D RI060_03950 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D RI060_04740 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D RI060_08545 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D RI060_18630 sbnA; 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140] D RI060_27665 sbnA; 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140] D RI060_29875 FAD/NAD(P)-binding protein K25562 creE; L-aspartate N-monooxygenase (nitrosuccinate-forming) [EC:1.14.13.248] D RI060_02630 cytochrome P450 K17876 CYP105D; pentalenic acid synthase [EC:1.14.15.11] C 00999 Biosynthesis of various plant secondary metabolites [PATH:sjn00999] D RI060_35160 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RI060_29660 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_35985 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_04380 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_09170 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_11140 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RI060_26850 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_28490 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D RI060_41975 GH1 family beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites [PATH:sjn00997] D RI060_18630 sbnA; 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140] D RI060_27665 sbnA; 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140] D RI060_03965 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase K18287 griI; 2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate synthase [EC:4.1.2.56] D RI060_03960 3-dehydroquinate synthase II family protein K17835 griH; 3-amino-4-hydroxybenzoic acid synthase [EC:4.1.99.20] D RI060_04845 SidA/IucD/PvdA family monooxygenase K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:sjn00362] D RI060_06090 pcaD; 3-oxoadipate enol-lactonase K14727 pcaL; 3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase [EC:3.1.1.24 4.1.1.44] D RI060_07710 pcaC; 4-carboxymuconolactone decarboxylase K14727 pcaL; 3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase [EC:3.1.1.24 4.1.1.44] D RI060_35940 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_09455 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_19415 amidohydrolase family protein K14333 DHBD; 2,3-dihydroxybenzoate decarboxylase [EC:4.1.1.46] D RI060_06605 intradiol ring-cleavage dioxygenase K04098 chqB; hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37] D RI060_06600 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D RI060_06080 pcaG; protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D RI060_06075 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D RI060_06085 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D RI060_03240 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D RI060_08430 RraA family protein K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D RI060_25315 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D RI060_36035 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D RI060_33645 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_37180 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_01670 acyl-CoA dehydrogenase family protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_12740 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_20685 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_34505 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_39925 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_01655 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_07345 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:sjn00627] D RI060_39360 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04000 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04285 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_16680 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_11605 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RI060_03690 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D RI060_03900 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D RI060_17355 UbiX family flavin prenyltransferase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RI060_09810 AMP-binding protein K08295 abmG; 2-aminobenzoate-CoA ligase [EC:6.2.1.32] D RI060_09825 bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase K09461 E1.14.13.40; anthraniloyl-CoA monooxygenase [EC:1.14.13.40] D RI060_19415 amidohydrolase family protein K14333 DHBD; 2,3-dihydroxybenzoate decarboxylase [EC:4.1.1.46] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_02790 cytochrome P450 K14338 cypD_E; cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] C 00364 Fluorobenzoate degradation [PATH:sjn00364] D RI060_41355 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D RI060_06600 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] C 00625 Chloroalkane and chloroalkene degradation [PATH:sjn00625] D RI060_39975 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D RI060_30145 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_33880 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_15115 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_18435 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_30060 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_33875 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_39640 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_03500 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D RI060_42690 glutathione-independent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D RI060_30535 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D RI060_39650 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D RI060_40420 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:sjn00361] D RI060_41355 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D RI060_06600 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D RI060_06605 intradiol ring-cleavage dioxygenase K04098 chqB; hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37] D RI060_06610 FAD-dependent monooxygenase K10676 tfdB; 2,4-dichlorophenol 6-monooxygenase [EC:1.14.13.20] D RI060_30535 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D RI060_39650 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D RI060_40420 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation [PATH:sjn00623] D RI060_02715 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D RI060_03690 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D RI060_03900 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D RI060_41355 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D RI060_06600 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] C 00622 Xylene degradation [PATH:sjn00622] D RI060_02715 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D RI060_03690 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D RI060_03900 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] C 00633 Nitrotoluene degradation [PATH:sjn00633] D RI060_25470 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D RI060_03980 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D RI060_39395 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D RI060_39390 hydrogenase expression protein HypE K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] C 00642 Ethylbenzene degradation D RI060_35940 thiolase family protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D RI060_09455 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:sjn00643] D RI060_33830 hmgA; homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D RI060_16760 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D RI060_39360 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04000 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_04285 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D RI060_16680 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation D RI060_36530 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D RI060_36525 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D RI060_36520 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:sjn00930] D RI060_24215 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D RI060_17530 alpha/beta hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D RI060_32955 aldehyde dehydrogenase (NADP(+)) K14519 aldH; NADP-dependent aldehyde dehydrogenase [EC:1.2.1.4] D RI060_12320 enoyl-CoA hydratase-related protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D RI060_05910 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:sjn00626] D RI060_39975 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D RI060_30145 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D RI060_33880 Zn-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D RI060_06080 pcaG; protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D RI060_06075 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation [PATH:sjn00984] D RI060_15820 GMC family oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6] D RI060_31290 GMC oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6] D RI060_29995 cytochrome P450 K15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29] D RI060_17280 kstD; 3-oxosteroid 1-dehydrogenase K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4] D RI060_24090 flavin reductase family protein K16048 hsaB; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase reductase component [EC:1.5.1.-] D RI060_24210 FadD3 family acyl-CoA ligase K18687 fadD3; HIP---CoA ligase [EC:6.2.1.41] C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:sjn03020] D RI060_16405 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RI060_16400 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RI060_37535 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RI060_35150 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D RI060_23595 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:sjn03010] D RI060_32075 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RI060_11435 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RI060_16280 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RI060_35020 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RI060_16225 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RI060_21250 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RI060_16385 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RI060_16240 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RI060_16115 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RI060_16315 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RI060_16180 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RI060_16390 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RI060_16185 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RI060_16245 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RI060_18480 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RI060_10955 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RI060_11520 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RI060_16265 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RI060_18455 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RI060_21260 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RI060_16290 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RI060_28280 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RI060_16430 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RI060_16295 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RI060_16310 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RI060_16305 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RI060_16250 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RI060_16235 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RI060_16410 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RI060_21265 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RI060_16415 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RI060_16435 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RI060_16120 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RI060_16260 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RI060_16215 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RI060_16275 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RI060_16170 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RI060_16230 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RI060_11500 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RI060_34455 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RI060_28090 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RI060_16285 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RI060_16300 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RI060_16255 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RI060_25105 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D RI060_28095 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RI060_18475 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RI060_11675 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RI060_16270 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RI060_16220 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RI060_12870 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RI060_18465 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RI060_36880 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RI060_04065 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RI060_11630 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RI060_16495 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RI060_18470 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RI060_21115 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RI060_34450 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RI060_16190 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RI060_10905 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:sjn00970] D RI060_11780 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RI060_26720 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RI060_36280 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RI060_12070 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RI060_12060 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RI060_12075 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RI060_35035 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RI060_20475 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RI060_28640 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RI060_21515 glycine--tRNA ligase K14164 glyQS; glycyl-tRNA synthetase [EC:6.1.1.14] D RI060_20280 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RI060_34875 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RI060_21470 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RI060_23315 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RI060_20420 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_04860 class I tRNA ligase family protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_05570 class I tRNA ligase family protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_35175 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RI060_05055 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D RI060_27970 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RI060_28225 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RI060_31575 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RI060_18125 phosphatidylglycerol lysyltransferase domain-containing protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RI060_17660 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RI060_12910 DALR anticodon-binding domain-containing protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RI060_17665 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RI060_11055 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RI060_11530 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RI060_34985 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RI060_34470 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RI060_34475 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RI060_33250 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RI060_15495 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RI060_17855 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:sjn03060] D RI060_16210 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RI060_16445 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RI060_32435 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RI060_34950 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RI060_34955 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RI060_34945 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RI060_21130 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_26565 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_25785 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RI060_11545 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RI060_11575 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RI060_31310 ArsA-related P-loop ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D RI060_34290 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RI060_38510 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D RI060_14035 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB D RI060_34295 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D RI060_28710 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_01125 S26 family signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_11480 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_11485 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_11490 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_11495 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_31585 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:sjn04122] D RI060_31150 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_12130 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_22920 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_01735 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_10360 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D RI060_12120 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RI060_13740 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RI060_33230 moaA; GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RI060_22905 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein D RI060_23480 ubiquitin-like small modifier protein 1 K03636 moaD; sulfur-carrier protein D RI060_26285 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein D RI060_13865 moeZ; adenylyltransferase/sulfurtransferase MoeZ K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D RI060_24810 moaC; cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RI060_31400 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein D RI060_26290 cysteine synthase K21148 cysM; [CysO sulfur-carrier protein]-thiocarboxylate-dependent cysteine synthase [EC:2.5.1.113] D RI060_26275 M67 family metallopeptidase K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome [PATH:sjn03050] D RI060_34220 arc; proteasome ATPase K13527 mpa; proteasome-associated ATPase D RI060_34240 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RI060_34235 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RI060_02040 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:sjn03018] D RI060_28085 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D RI060_25270 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_01630 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_10950 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RI060_16800 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RI060_10530 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RI060_12885 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RI060_39810 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RI060_30730 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D RI060_10910 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D RI060_19305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_07045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_15920 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_23490 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_22765 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RI060_27030 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D RI060_21195 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:sjn03030] D RI060_33190 DEDDh family exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_08890 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_34860 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_22800 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_31640 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_22280 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RI060_18670 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RI060_28265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RI060_21105 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RI060_21275 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RI060_28940 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RI060_21255 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_27430 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_29045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_43415 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_40865 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RI060_30175 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73] D RI060_10545 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RI060_32035 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RI060_12085 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:sjn03410] D RI060_18815 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RI060_35880 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RI060_37975 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RI060_17955 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RI060_33385 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D RI060_36850 DNA-formamidopyrimidine glycosylase family protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RI060_04205 Fpg/Nei family DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RI060_11620 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RI060_27840 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D RI060_10820 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D RI060_07420 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RI060_08315 Ada metal-binding domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RI060_14075 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D RI060_36240 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D RI060_17340 UdgX family uracil-DNA binding protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RI060_32125 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RI060_24840 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RI060_07700 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RI060_31385 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RI060_32035 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RI060_12085 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:sjn03420] D RI060_25195 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RI060_17405 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RI060_32360 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RI060_04080 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RI060_32290 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D RI060_32395 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D RI060_13810 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_13835 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_15730 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_32035 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RI060_12085 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RI060_23595 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:sjn03430] D RI060_13810 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_13835 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_15730 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_14380 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RI060_14385 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RI060_21255 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_27430 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_29045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_43415 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_22800 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_31640 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_21105 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RI060_22280 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RI060_28265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RI060_18670 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RI060_33190 DEDDh family exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_08890 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_34860 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_12085 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:sjn03440] D RI060_21255 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_27430 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_29045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_43415 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_21095 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D RI060_28610 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D RI060_19005 recR; recombination mediator RecR K06187 recR; recombination protein RecR D RI060_10780 recA; recombinase RecA K03553 recA; recombination protein RecA D RI060_32035 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RI060_34935 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RI060_34940 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RI060_34930 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RI060_11655 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RI060_27220 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D RI060_22800 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_31640 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_21105 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RI060_22280 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RI060_28265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RI060_18670 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RI060_33190 DEDDh family exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_08890 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_34860 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_35165 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:sjn03450] D RI060_13175 Ku protein K10979 ku; DNA end-binding protein Ku D RI060_13180 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D RI060_41230 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D RI060_07205 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:sjn03250] D RI060_21000 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:sjn02010] D RI060_16780 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_27805 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_36930 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_01750 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_01760 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_05665 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_08755 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_16785 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_27800 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_36940 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_01740 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_05605 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_08765 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_16790 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_27795 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_36935 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_01745 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_05610 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_08760 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_35695 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RI060_35690 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D RI060_35685 ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RI060_11395 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D RI060_11390 iron ABC transporter permease K02063 thiP; thiamine transport system permease protein D RI060_11385 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D RI060_11210 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D RI060_11195 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein D RI060_11200 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D RI060_11205 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D RI060_39615 ABC transporter ATP-binding protein K11080 attA1; mannopine transport system ATP-binding protein D RI060_15575 ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RI060_34360 ABC transporter permease/substrate binding protein K02001 proW; glycine betaine/proline transport system permease protein D RI060_39025 ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RI060_15580 ABC transporter permease subunit K02001 proW; glycine betaine/proline transport system permease protein D RI060_39020 ABC transporter permease subunit K02001 proW; glycine betaine/proline transport system permease protein D RI060_15585 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D RI060_34355 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D RI060_39015 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D RI060_26180 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D RI060_28440 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D RI060_09055 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D RI060_26185 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_26195 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_28430 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_28435 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_09060 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_09065 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein D RI060_26190 betaine/proline/choline family ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D RI060_28425 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D RI060_09070 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D RI060_23340 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_33870 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_05205 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_27720 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_27730 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_30605 extracellular solute-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D RI060_30610 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D RI060_30615 carbohydrate ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D RI060_35715 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D RI060_09435 ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D RI060_38560 ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D RI060_35720 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D RI060_38555 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D RI060_09430 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D RI060_35725 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D RI060_38550 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D RI060_09425 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D RI060_32760 sugar ABC transporter substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein D RI060_09720 sugar ABC transporter substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein D RI060_32755 sugar ABC transporter permease K10228 smoF; polyol transport system permease protein D RI060_32750 carbohydrate ABC transporter permease K10229 smoG; polyol transport system permease protein D RI060_25900 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein D RI060_32485 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein D RI060_25895 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein D RI060_32490 ABC transporter permease subunit K10233 aglF; alpha-glucoside transport system permease protein D RI060_25890 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein D RI060_32495 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein D RI060_02085 extracellular solute-binding protein K17241 aguE; alpha-1,4-digalacturonate transport system substrate-binding protein D RI060_02080 sugar ABC transporter permease K17242 aguF; alpha-1,4-digalacturonate transport system permease protein D RI060_02075 carbohydrate ABC transporter permease K17243 aguG; alpha-1,4-digalacturonate transport system permease protein D RI060_38620 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D RI060_09560 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D RI060_11135 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D RI060_38610 ABC transporter permease subunit K17319 lplB; putative aldouronate transport system permease protein D RI060_09570 ABC transporter permease subunit K17319 lplB; putative aldouronate transport system permease protein D RI060_11130 ABC transporter permease subunit K17319 lplB; putative aldouronate transport system permease protein D RI060_38615 carbohydrate ABC transporter permease K17320 lplC; putative aldouronate transport system permease protein D RI060_09565 carbohydrate ABC transporter permease K17320 lplC; putative aldouronate transport system permease protein D RI060_11125 carbohydrate ABC transporter permease K17320 lplC; putative aldouronate transport system permease protein D RI060_20365 extracellular solute-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D RI060_32475 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D RI060_05220 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D RI060_05215 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D RI060_05210 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D RI060_09535 ngcE; N-acetylglucosamine/diacetylchitobiose ABC transporter substrate-binding protein K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein D RI060_09530 sugar ABC transporter permease K10201 ngcF; N-acetylglucosamine transport system permease protein D RI060_09525 carbohydrate ABC transporter permease K10202 ngcG; N-acetylglucosamine transport system permease protein D RI060_26865 extracellular solute-binding protein K10240 cebE; cellobiose transport system substrate-binding protein D RI060_32705 extracellular solute-binding protein K10240 cebE; cellobiose transport system substrate-binding protein D RI060_06305 extracellular solute-binding protein K10240 cebE; cellobiose transport system substrate-binding protein D RI060_26860 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein D RI060_32710 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein D RI060_06310 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein D RI060_26855 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein D RI060_32715 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein D RI060_06315 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein D RI060_13555 extracellular solute-binding protein K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein D RI060_26060 extracellular solute-binding protein K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein D RI060_13550 sugar ABC transporter permease K17330 dasB; N,N'-diacetylchitobiose transport system permease protein D RI060_26065 sugar ABC transporter permease K17330 dasB; N,N'-diacetylchitobiose transport system permease protein D RI060_13545 carbohydrate ABC transporter permease K17331 dasC; N,N'-diacetylchitobiose transport system permease protein D RI060_26070 carbohydrate ABC transporter permease K17331 dasC; N,N'-diacetylchitobiose transport system permease protein D RI060_09155 extracellular solute-binding protein K17244 chiE; putative chitobiose transport system substrate-binding protein D RI060_09160 sugar ABC transporter permease K17245 chiF; putative chitobiose transport system permease protein D RI060_09165 carbohydrate ABC transporter permease K17246 chiG; putative chitobiose transport system permease protein D RI060_09125 ABC transporter substrate-binding protein K17234 araN; arabinooligosaccharide transport system substrate-binding protein D RI060_09120 sugar ABC transporter permease K17235 araP; arabinooligosaccharide transport system permease protein D RI060_09115 carbohydrate ABC transporter permease K17236 araQ; arabinooligosaccharide transport system permease protein D RI060_29600 chvE; sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein D RI060_29590 gguB; sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein D RI060_29595 gguA; sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_30245 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30250 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30255 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30260 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30265 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30270 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30235 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RI060_30240 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RI060_30230 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D RI060_15260 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D RI060_15265 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D RI060_15250 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D RI060_15245 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D RI060_15255 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D RI060_27160 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_36995 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_39990 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_04260 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_06850 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_36990 ABC transporter permease K10440 rbsC; ribose transport system permease protein D RI060_39980 ABC transporter permease K10440 rbsC; ribose transport system permease protein D RI060_06855 ABC transporter permease K10440 rbsC; ribose transport system permease protein D RI060_27165 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RI060_36985 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RI060_39985 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RI060_06860 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RI060_27150 rbsD; D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D RI060_17295 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein D RI060_19285 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein D RI060_09515 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein D RI060_09705 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein D RI060_09505 sugar ABC transporter permease K10544 xylH; D-xylose transport system permease protein D RI060_09715 sugar ABC transporter permease K10544 xylH; D-xylose transport system permease protein D RI060_09510 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D RI060_09710 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D RI060_19695 sugar ABC transporter substrate-binding protein K10552 frcB; fructose transport system substrate-binding protein D RI060_19700 ABC transporter permease K10553 frcC; fructose transport system permease protein D RI060_19705 ATP-binding cassette domain-containing protein K10554 frcA; fructose transport system ATP-binding protein D RI060_02870 rhaS; rhamnose ABC transporter substrate-binding protein K10559 rhaS; rhamnose transport system substrate-binding protein D RI060_02880 ABC transporter permease K10560 rhaP; rhamnose transport system permease protein D RI060_02875 ABC transporter permease K10561 rhaQ; rhamnose transport system permease protein D RI060_02885 sugar ABC transporter ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D RI060_19020 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D RI060_22750 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D RI060_22745 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D RI060_22740 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D RI060_22735 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RI060_10740 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein D RI060_10745 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein D RI060_10750 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein D RI060_07685 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1] D RI060_10735 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1] D RI060_23970 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_32020 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_38335 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_03450 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_32015 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_38315 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_03460 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_32010 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_38320 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_03455 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_32005 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_38325 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_03470 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_32000 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_33590 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_38330 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_03465 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_34690 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D RI060_34685 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein D RI060_34680 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein D RI060_40675 substrate-binding domain-containing protein K11959 urtA; urea transport system substrate-binding protein D RI060_14205 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D RI060_14200 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D RI060_14195 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D RI060_14190 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D RI060_14185 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D RI060_26960 ABC transporter substrate-binding protein K25287 desE; iron-desferrioxamine transport system substrate-binding protein D RI060_05030 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D RI060_33425 iron chelate uptake ABC transporter family permease subunit K23186 fepD; iron-siderophore transport system permease protein D RI060_05045 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D RI060_33430 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein D RI060_05040 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein D RI060_33435 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D RI060_05035 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D RI060_07940 iron-siderophore ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D RI060_07945 iron ABC transporter permease K23228 fhuB; ferric hydroxamate transport system permease protein D RI060_07935 ABC transporter ATP-binding protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D RI060_28635 metal ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D RI060_28625 metal ABC transporter permease K09816 znuB; zinc transport system permease protein D RI060_28630 metal ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RI060_03095 energy-coupling factor ABC transporter substrate-binding protein K02009 cbiN; cobalt/nickel transport protein D RI060_24940 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein D RI060_03090 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein D RI060_24935 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D RI060_03100 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D RI060_24930 ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RI060_03105 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RI060_27815 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D RI060_30015 energy-coupling factor transporter transmembrane component T K16785 ecfT; energy-coupling factor transport system permease protein D RI060_25835 ABC transporter permease K09692 tagG; teichoic acid transport system permease protein D RI060_05780 ABC transporter permease K09692 tagG; teichoic acid transport system permease protein D RI060_25830 ABC transporter ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D RI060_05775 ABC transporter ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D RI060_16090 ABC transporter permease K18233 oleC5; oleandomycin transport system permease protein D RI060_30500 ABC transporter permease K18233 oleC5; oleandomycin transport system permease protein D RI060_16095 ATP-binding cassette domain-containing protein K18232 oleC4; oleandomycin transport system ATP-binding protein D RI060_30505 ATP-binding cassette domain-containing protein K18232 oleC4; oleandomycin transport system ATP-binding protein D RI060_25940 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RI060_25935 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RI060_05235 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D RI060_05240 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D RI060_28955 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RI060_28950 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D RI060_21405 cydD; thiol reductant ABC exporter subunit CydD K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD D RI060_07445 ABC-F family ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:sjn02060] D RI060_35595 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D RI060_10390 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D RI060_35600 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RI060_26305 PTS transporter subunit EIIC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D RI060_25675 fructose-specific PTS transporter subunit EIIC K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191] D RI060_24725 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RI060_24720 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:sjn03070] D RI060_34950 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RI060_34955 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RI060_16445 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RI060_32435 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RI060_16210 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RI060_34945 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RI060_21130 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_26565 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_25785 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RI060_11575 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RI060_11545 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RI060_34290 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RI060_38510 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D RI060_14035 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB D RI060_34295 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:sjn02020] D RI060_28110 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_30360 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_31620 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_36180 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_41465 alkaline phosphatase D family protein K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D RI060_23285 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D RI060_23290 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3 D RI060_19020 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D RI060_22750 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D RI060_11450 whiG; RNA polymerase sigma factor WhiG K02405 fliA; RNA polymerase sigma factor FliA D RI060_10280 DUF4118 domain-containing protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RI060_10275 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RI060_37925 kdpA; potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D RI060_37930 kdpB; potassium-transporting ATPase subunit KdpB K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D RI060_37935 potassium-transporting ATPase subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit D RI060_38635 tripartite tricarboxylate transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D RI060_38640 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D RI060_38645 tripartite tricarboxylate transporter substrate binding protein K07795 tctC; putative tricarboxylic transport membrane protein D RI060_05085 tripartite tricarboxylate transporter substrate binding protein K07795 tctC; putative tricarboxylic transport membrane protein D RI060_32555 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D RI060_17600 HAMP domain-containing sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D RI060_22870 HAMP domain-containing sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D RI060_17605 response regulator transcription factor K07669 mprA; two-component system, OmpR family, response regulator MprA D RI060_22875 response regulator transcription factor K07669 mprA; two-component system, OmpR family, response regulator MprA D RI060_14040 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D RI060_21565 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D RI060_22885 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D RI060_15160 HAMP domain-containing sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_25750 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_08855 HAMP domain-containing sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_25745 mtrA; two-component system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA D RI060_21110 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RI060_28900 amino acid adenylation domain-containing protein K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D RI060_35570 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RI060_30525 endonuclease/exonuclease/phosphatase family protein K18353 vanJ; vancomycin resistance protein VanJ D RI060_31800 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D RI060_01045 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D RI060_07365 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D RI060_13360 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RI060_26035 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RI060_39380 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D RI060_36395 nucleotide sugar dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132] D RI060_07040 molecular chaperone TorD family protein K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D RI060_10700 sensor histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D RI060_14140 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RI060_22315 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RI060_22310 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR D RI060_14725 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D RI060_14720 AAA family ATPase K02282 cpaE; pilus assembly protein CpaE D RI060_14705 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D RI060_18745 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D RI060_14700 type II secretion system F family protein K12510 tadB; tight adherence protein B D RI060_18740 type II secretion system F family protein K12510 tadB; tight adherence protein B D RI060_14695 DUF5936 domain-containing protein K12511 tadC; tight adherence protein C D RI060_11550 [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D RI060_28455 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1 D RI060_11555 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1 D RI060_30575 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30695 glnII; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30905 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_34400 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_41955 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_05485 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_12480 cation:dicarboxylase symporter family transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D RI060_36905 cation:dicarboxylase symporter family transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D RI060_39390 hydrogenase expression protein HypE K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D RI060_39395 nickel-dependent hydrogenase large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D RI060_18820 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RI060_39790 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D RI060_21395 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D RI060_21400 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D RI060_12850 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D RI060_21330 low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D RI060_22835 pectinesterase family protein K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D RI060_32855 pectinesterase family protein K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D RI060_32875 pectinesterase family protein K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D RI060_12605 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_23785 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_26635 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_35255 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_37240 cellulase family glycosylhydrolase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_02565 glycoside hydrolase family 9 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_03415 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D RI060_06960 glycoside hydrolase family 6 protein K19668 CBH2; cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D RI060_39700 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] D RI060_03155 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] D RI060_05895 arginase family protein K01476 rocF; arginase [EC:3.5.3.1] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:sjn02024] D RI060_31750 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RI060_31365 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RI060_36095 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D RI060_31360 anthranilate synthase family protein K13063 phzE; 2-amino-4-deoxychorismate synthase [EC:2.6.1.86] D RI060_10275 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RI060_18215 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D RI060_39610 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D RI060_40425 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D RI060_39625 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D RI060_40440 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D RI060_39620 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D RI060_40435 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D RI060_40430 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D RI060_23970 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_32020 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_38335 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_03450 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_32015 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_38315 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_03460 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_32010 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_38320 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_03455 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_32005 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_38325 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_03470 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_32000 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_33590 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_38330 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_03465 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_22835 pectinesterase family protein K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D RI060_32835 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D RI060_32855 pectinesterase family protein K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D RI060_32870 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D RI060_32885 pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D RI060_38025 polysaccharide lyase family 1 protein K01728 pel; pectate lyase [EC:4.2.2.2] D RI060_28860 M4 family metallopeptidase K20273 zmpA; zinc metalloprotease ZmpA D RI060_19845 inclusion body family protein K20275 aidA; nematocidal protein AidA D RI060_17300 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_28290 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_31295 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_33960 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_39950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_40495 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_41145 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_03540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_06945 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_18820 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RI060_38590 cellulase family glycosylhydrolase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D RI060_22520 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D RI060_14205 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D RI060_14200 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D RI060_14195 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D RI060_14190 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D RI060_14185 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D RI060_21015 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_34180 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_34185 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_35875 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_38250 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_38405 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_39505 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_40465 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_01080 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_06530 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_09995 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_10970 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_11950 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_12185 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_14220 ABC transporter family substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_15440 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_28555 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_13905 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_13895 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_28550 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_38255 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_38410 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_39500 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_40460 ABC transporter permease subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_01085 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_03075 ABC transporter permease subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_09990 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_10975 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_11955 ABC transporter permease subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_12180 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_13900 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_28545 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_38245 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_38415 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_39495 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_09985 ABC transporter permease subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_10980 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_12190 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_13890 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_38260 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_01090 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_09980 ATP-binding cassette domain-containing protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_10985 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_12175 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_11960 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_38420 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_39490 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_28540 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RI060_38265 dipeptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RI060_01095 ATP-binding cassette domain-containing protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RI060_12170 dipeptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RI060_21130 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_26565 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_08990 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RI060_16445 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RI060_32435 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RI060_16210 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RI060_34945 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RI060_25785 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RI060_11575 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RI060_11545 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RI060_06140 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D RI060_27160 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_36995 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_39990 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_04260 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_06850 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein C 02040 Flagellar assembly [PATH:sjn02040] D RI060_28945 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D RI060_10500 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D RI060_11450 whiG; RNA polymerase sigma factor WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D RI060_25270 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_01630 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:sjn04980] D RI060_12760 cob(I)yrinic acid a,c-diamide adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D RI060_12665 meaB; methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-] D RI060_08145 meaB; methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-] D RI060_08135 methylmalonyl-CoA mutase family protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D RI060_08140 scpA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D RI060_34170 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:sjn01501] D RI060_13540 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RI060_27085 glycoside hydrolase family 3 protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RI060_09185 glycoside hydrolase family 3 N-terminal domain-containing protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D RI060_14205 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D RI060_14200 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D RI060_14195 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D RI060_14190 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D RI060_14185 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D RI060_16765 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D RI060_20180 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RI060_36445 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RI060_00530 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RI060_14445 transglycosylase domain-containing protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RI060_28005 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RI060_31505 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RI060_00520 MBL fold metallo-hydrolase K17837 bla2; metallo-beta-lactamase class B [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:sjn01502] D RI060_35570 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RI060_11700 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RI060_16040 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RI060_31515 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D RI060_31520 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RI060_31535 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RI060_30525 endonuclease/exonuclease/phosphatase family protein K18353 vanJ; vancomycin resistance protein VanJ C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:sjn01503] D RI060_30105 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RI060_21000 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RI060_28900 amino acid adenylation domain-containing protein K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:sjn01000] C 01001 Protein kinases [BR:sjn01001] D RI060_27460 tetratricopeptide repeat protein K14949 pknG; serine/threonine-protein kinase PknG [EC:2.7.11.1] D RI060_12245 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_15830 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_15845 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_15855 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_20605 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_20610 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_20950 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_25240 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_31390 pknB; Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_33770 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_40475 tetratricopeptide repeat protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_03085 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_09755 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_03845 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_15840 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D RI060_22505 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D RI060_41115 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D RI060_13480 anti-sigma regulatory factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D RI060_21510 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D RI060_25910 protein kinase K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1] D RI060_25915 serine/threonine-protein kinase K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1] D RI060_23285 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D RI060_10280 DUF4118 domain-containing protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RI060_17600 HAMP domain-containing sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D RI060_22870 HAMP domain-containing sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D RI060_15160 HAMP domain-containing sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_25750 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_08855 HAMP domain-containing sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_21990 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D RI060_09075 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D RI060_18970 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D RI060_10700 sensor histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D RI060_14140 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RI060_22315 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RI060_12485 sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D RI060_05080 ATP-binding protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D RI060_10450 sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D RI060_36610 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D RI060_13505 PAS domain-containing sensor histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:sjn01009] D RI060_25680 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RI060_38505 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RI060_11660 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D RI060_20935 Stp1/IreP family PP2C-type Ser/Thr phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D RI060_29360 MerR family transcriptional regulator K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D RI060_33305 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:sjn01002] D RI060_31585 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D RI060_16925 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RI060_39450 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D RI060_06185 pcp; pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D RI060_15800 guaA; glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RI060_34385 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D RI060_13250 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_15735 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_15750 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_16875 C40 family peptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_31255 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_31260 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_23135 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_22385 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RI060_31835 gltB; glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D RI060_13520 SIS domain-containing protein K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_16085 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_26910 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RI060_36135 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RI060_36375 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RI060_04970 lasso peptide isopeptide bond-forming cyclase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RI060_07120 type 1 glutamine amidotransferase domain-containing protein K05520 yhbO; deglycase [EC:3.5.1.124] D RI060_20965 class E sortase K07284 srtA; sortase A [EC:3.4.22.70] D RI060_20980 class E sortase K07284 srtA; sortase A [EC:3.4.22.70] D RI060_19325 type II CAAX endopeptidase family protein K07052 K07052; CAAX protease family protein D RI060_42670 CPBP family intramembrane glutamic endopeptidase K07052 K07052; CAAX protease family protein D RI060_41925 CPBP family intramembrane glutamic endopeptidase K07052 K07052; CAAX protease family protein D RI060_20835 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RI060_27600 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RI060_27690 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RI060_31950 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D RI060_28860 M4 family metallopeptidase K20273 zmpA; zinc metalloprotease ZmpA D RI060_26240 immune inhibitor A K09607 ina; immune inhibitor A [EC:3.4.24.-] D RI060_40200 snapalysin family zinc-dependent metalloprotease K01416 snpA; snapalysin [EC:3.4.24.77] D RI060_14785 M14 family metallopeptidase K05996 cpt; carboxypeptidase T [EC:3.4.17.18] D RI060_35570 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RI060_31000 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D RI060_25465 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D RI060_17540 M20 family metallopeptidase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D RI060_14095 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D RI060_38275 dipeptidase K23980 tpdA; cysteinylglycine-S-conjugate dipeptidase [EC:3.4.13.23] D RI060_16200 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RI060_30455 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RI060_00450 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RI060_07660 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RI060_21530 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D RI060_16665 M28 family metallopeptidase K19702 E3.4.11.24; aminopeptidase S [EC:3.4.11.24] D RI060_18160 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RI060_16555 htpX; zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D RI060_30725 htpX; zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D RI060_07270 M55 family metallopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D RI060_16765 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D RI060_22550 PrsW family intramembrane metalloprotease K24131 prsW; protease PrsW [EC:3.4.-.-] D RI060_14040 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D RI060_21565 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D RI060_22885 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D RI060_33660 S1 family peptidase K18545 sprB; streptogrisin B [EC:3.4.21.81] D RI060_41460 alpha-lytic protease prodomain-containing protein K18546 sprC; streptogrisin C [EC:3.4.21.-] D RI060_33665 S1 family peptidase K18547 sprD; streptogrisin D [EC:3.4.21.-] D RI060_02200 S1 family peptidase K18547 sprD; streptogrisin D [EC:3.4.21.-] D RI060_02455 S1 family peptidase K18547 sprD; streptogrisin D [EC:3.4.21.-] D RI060_36965 S1 family peptidase K18548 sprE; glutamyl endopeptidase II [EC:3.4.21.82] D RI060_08990 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RI060_14175 prolyl oligopeptidase family serine peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D RI060_15455 DUF5136 domain-containing protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_20575 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_24410 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_18180 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D RI060_27950 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RI060_27955 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RI060_36500 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RI060_40820 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RI060_40825 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D RI060_05885 Xaa-Pro dipeptidyl-peptidase K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11] D RI060_13290 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D RI060_13730 PDZ domain-containing protein K07177 K07177; Lon-like protease D RI060_26165 S16 family serine protease K07177 K07177; Lon-like protease D RI060_10590 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RI060_28710 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_01125 S26 family signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_11480 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_11485 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_11490 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_11495 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D RI060_20100 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D RI060_01195 alpha/beta hydrolase K27108 ephA_B; epoxide hydrolase A/B [EC:3.3.2.-] D RI060_24190 alpha/beta hydrolase K27108 ephA_B; epoxide hydrolase A/B [EC:3.3.2.-] D RI060_25945 S41 family peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D RI060_24870 S41 family peptidase K08676 tri; tricorn protease [EC:3.4.21.-] D RI060_28350 PDZ domain-containing protein K08676 tri; tricorn protease [EC:3.4.21.-] D RI060_22135 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D RI060_24790 penicillin acylase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11] D RI060_31240 rhomboid family intramembrane serine protease K07059 K07059; rhomboid family protein D RI060_07255 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D RI060_34240 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RI060_34235 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RI060_02040 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RI060_07510 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RI060_07670 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D RI060_33260 TldD/PmbA family protein K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:sjn01003] D RI060_14875 glycosyltransferase family 2 protein K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D RI060_35385 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D RI060_24960 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] D RI060_34905 glycosyltransferase family 4 protein K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345] D RI060_19995 glycosyltransferase family 4 protein K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346] D RI060_31285 glycosyltransferase family 4 protein K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346] D RI060_35445 glycosyltransferase K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-] D RI060_09475 glycosyltransferase K00752 hasA; hyaluronan synthase [EC:2.4.1.212] D RI060_35440 glycosyltransferase family 1 protein K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-] D RI060_04335 glgA; glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D RI060_14445 transglycosylase domain-containing protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RI060_31010 pelF; GT4 family glycosyltransferase PelF K21011 pelF; polysaccharide biosynthesis protein PelF D RI060_12840 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RI060_19310 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RI060_02380 glycosyltransferase family A protein K22708 tarS; poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase [EC:2.4.1.355] D RI060_39800 glycosyltransferase 87 family protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-] D RI060_25870 hypothetical protein K13687 aftB; arabinofuranosyltransferase [EC:2.4.2.-] D RI060_29405 alpha-(1->3)-arabinofuranosyltransferase family protein K16648 aftD; arabinofuranan 3-O-arabinosyltransferase [EC:2.4.2.-] D RI060_30075 glycosyltransferase family 4 protein K26815 manT; MMP alpha-(1->4)-mannosyltransferase [EC:2.4.1.393] D RI060_41685 glycosyltransferase K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173] D RI060_23465 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D RI060_23470 glucosyl-3-phosphoglycerate synthase K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266] C 01005 Lipopolysaccharide biosynthesis proteins [BR:sjn01005] D RI060_08205 HAD-IIIA family hydrolase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D RI060_12840 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D RI060_19310 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:sjn01011] D RI060_26045 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RI060_09745 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D RI060_16465 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D RI060_09200 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D RI060_31525 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D RI060_31510 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D RI060_11700 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D RI060_16040 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D RI060_38850 aspartate/glutamate racemase family protein K01776 murI; glutamate racemase [EC:5.1.1.3] D RI060_07255 LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D RI060_31520 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D RI060_31535 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D RI060_35930 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_39765 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_22700 phosphatase PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D RI060_21185 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D RI060_27335 lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase D RI060_14445 transglycosylase domain-containing protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D RI060_28005 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D RI060_31505 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RI060_13215 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D RI060_20945 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D RI060_32925 penicillin-binding transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A D RI060_15455 DUF5136 domain-containing protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_20575 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_24410 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D RI060_18180 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D RI060_35570 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RI060_13250 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_15735 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_15750 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_16875 C40 family peptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_31255 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_31260 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_23135 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D RI060_20965 class E sortase K07284 srtA; sortase A [EC:3.4.22.70] D RI060_20980 class E sortase K07284 srtA; sortase A [EC:3.4.22.70] D RI060_35045 mltG; endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D RI060_30105 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:sjn01004] D RI060_29695 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RI060_09150 peptidyl-prolyl cis-trans isomerase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D RI060_20860 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_29690 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_04745 ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_06875 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_08550 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_18270 ketoacyl-ACP synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D RI060_29680 fabF; beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_03940 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_08540 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D RI060_17310 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_31885 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_33150 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_33265 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_35865 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_36155 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_37825 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_03910 fabG; 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_07885 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_10825 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D RI060_26995 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D RI060_36865 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D RI060_03505 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D RI060_33270 fabI; enoyl-ACP reductase FabI K11611 inhA; meromycolic acid enoyl-[acyl-carrier-protein] reductase [EC:1.3.1.118] D RI060_25080 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D RI060_05995 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D RI060_41825 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D RI060_18280 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K05551 actI1; minimal PKS ketosynthase (KS/KS alpha) [EC:2.3.1.- 2.3.1.260 2.3.1.235] D RI060_18275 ketosynthase chain-length factor K05552 actI2; minimal PKS chain-length factor (CLF/KS beta) [EC:2.3.1.- 2.3.1.260 2.3.1.235] D RI060_18410 acyl carrier protein K05553 actI3; minimal PKS acyl carrier protein D RI060_18350 SDR family NAD(P)-dependent oxidoreductase K12420 actIII; ketoreductase [EC:1.1.1.-] D RI060_18780 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_08095 AMP-binding protein K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RI060_30285 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D RI060_35585 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D RI060_24100 acetate--CoA ligase family protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D RI060_17300 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_28290 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_31295 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_33960 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_39950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_40495 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_41145 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_03540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_06945 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_40510 acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D RI060_08090 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D RI060_31340 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_33565 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_34645 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D RI060_36560 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:sjn01008] D RI060_18280 beta-ketoacyl-[acyl-carrier-protein] synthase family protein K05551 actI1; minimal PKS ketosynthase (KS/KS alpha) [EC:2.3.1.- 2.3.1.260 2.3.1.235] D RI060_18275 ketosynthase chain-length factor K05552 actI2; minimal PKS chain-length factor (CLF/KS beta) [EC:2.3.1.- 2.3.1.260 2.3.1.235] D RI060_18410 acyl carrier protein K05553 actI3; minimal PKS acyl carrier protein D RI060_18350 SDR family NAD(P)-dependent oxidoreductase K12420 actIII; ketoreductase [EC:1.1.1.-] D RI060_18330 cyclase family protein K14250 oxyN; cyclase D RI060_03355 type III polyketide synthase K16232 gcs; germicidin synthase D RI060_41770 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein K16167 bpsA; alkylresorcinol/alkylpyrone synthase D RI060_18620 MbtH family NRPS accessory protein K05375 mbtH; MbtH protein D RI060_04720 MbtH family protein K05375 mbtH; MbtH protein D RI060_04995 MbtH family protein K05375 mbtH; MbtH protein D RI060_37185 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein K05556 actVI1; ketoreductase RED1 [EC:1.1.1.-] D RI060_20750 cytochrome P450 K20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31] D RI060_41370 cytochrome P450 K20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31] D RI060_09015 cytochrome P450 K20420 ncsB3; 2-hydroxy-5-methyl-1-naphthoate 7-hydroxylase [EC:1.14.15.31] D RI060_32725 alpha/beta fold hydrolase K21159 sgcF; epoxide hydrolase D RI060_40830 epoxide hydrolase K21159 sgcF; epoxide hydrolase D RI060_18285 antibiotic biosynthesis monooxygenase family protein K15941 snoaB; deoxynogalonate / 12-deoxyaklanonic acid monooxygenase [EC:1.13.12.22 1.13.12.-] D RI060_18400 methyltransferase domain-containing protein K15942 snoaC; O-methyltransferase / aklanonic acid methyltransferase [EC:2.1.1.- 2.1.1.288] D RI060_41775 isoprenylcysteine carboxylmethyltransferase family protein K16168 bpsB; methyltransferase D RI060_18255 activator-dependent family glycosyltransferase K24529 mycB; protomycinolide IV desosaminyltransferase [EC:2.4.1.-] D RI060_18360 activator-dependent family glycosyltransferase K24529 mycB; protomycinolide IV desosaminyltransferase [EC:2.4.1.-] D RI060_39175 AMP-binding protein K16431 cepH; FAD-dependent halogenase [EC:1.14.19.-] D RI060_20875 3-hydroxyacyl-CoA dehydrogenase family protein K16024 asm13; methoxymalonate biosynthesis protein D RI060_20870 acyl carrier protein K16025 asm14; methoxymalonate biosynthesis acyl carrier protein D RI060_20865 acyl-CoA dehydrogenase family protein K16026 asm15; methoxymalonate biosynthesis protein D RI060_14550 hypothetical protein K14628 actVI2; enoyl reductase D RI060_18395 ester cyclase K15943 snoaL; nogalonic acid methyl ester cyclase / aklanonic acid methyl ester cyclase [EC:5.5.1.26 5.5.1.23] D RI060_18340 SDR family oxidoreductase K15944 snoaF; nogalaviketone/aklaviketone reductase [EC:1.1.1.- 1.1.1.362] D RI060_39330 amino acid racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:sjn01006] D RI060_13455 family 2 encapsulin nanocompartment cargo protein polyprenyl transferase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RI060_26425 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RI060_05750 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RI060_40935 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RI060_14505 isoprenyl transferase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] D RI060_28615 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RI060_00300 squalene/phytoene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D RI060_05765 hpnD; presqualene diphosphate synthase HpnD K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D RI060_10650 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RI060_17365 mqnP; menaquinone biosynthesis prenyltransferase MqnP K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D RI060_32540 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RI060_15470 decaprenyl-phosphate phosphoribosyltransferase K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45] C 01007 Amino acid related enzymes [BR:sjn01007] D RI060_17660 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RI060_11780 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RI060_33250 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RI060_15495 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RI060_17855 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RI060_23315 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RI060_12910 DALR anticodon-binding domain-containing protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RI060_17665 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RI060_20420 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_04860 class I tRNA ligase family protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_05570 class I tRNA ligase family protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_31575 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RI060_27970 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RI060_28225 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RI060_18125 phosphatidylglycerol lysyltransferase domain-containing protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RI060_20475 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RI060_34985 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RI060_28640 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RI060_21470 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RI060_11055 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RI060_11530 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RI060_20280 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RI060_34875 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RI060_35035 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RI060_34470 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RI060_34475 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RI060_16455 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_03245 aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RI060_04540 valine--pyruvate transaminase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D RI060_14835 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RI060_07990 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D RI060_19190 pyridoxal phosphate-dependent aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D RI060_21385 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_31695 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_33020 cobC; Rv2231c family pyridoxal phosphate-dependent protein CobC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RI060_05530 glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D RI060_36465 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D RI060_02190 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D RI060_36580 rocD; ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D RI060_05720 aspartate aminotransferase family protein K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D RI060_34580 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RI060_11160 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D RI060_39580 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_07640 aspartate aminotransferase family protein K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D RI060_32990 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D RI060_10610 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D RI060_36455 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D RI060_17460 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RI060_36300 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RI060_34775 aminodeoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_11905 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RI060_23805 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 [BR:sjn00199] D RI060_02790 cytochrome P450 K14338 cypD_E; cytochrome P450 / NADPH-cytochrome P450 reductase [EC:1.14.14.1 1.6.2.4] D RI060_02630 cytochrome P450 K17876 CYP105D; pentalenic acid synthase [EC:1.14.15.11] D RI060_29995 cytochrome P450 K15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29] D RI060_05125 cytochrome P450 K19628 CYP158A1; biflaviolin synthase [EC:1.14.19.69] D RI060_36660 cytochrome P450 K13074 CYP158A2; biflaviolin synthase [EC:1.14.19.69] D RI060_13600 cytochrome P450 K12645 CYP170A; epi-isozizaene 5-monooxygenase / beta-farnesene synthase [EC:1.14.15.39 4.2.3.47] C 00194 Photosynthesis proteins [BR:sjn00194] D RI060_12795 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D RI060_12800 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D RI060_12805 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D RI060_12810 atpA; F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D RI060_12815 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D RI060_12820 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D RI060_12825 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D RI060_12830 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RI060_12835 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:sjn03000] D RI060_26530 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_26535 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_02590 helix-turn-helix domain-containing protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D RI060_18520 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D RI060_07420 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RI060_08315 Ada metal-binding domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RI060_19780 DJ-1/PfpI family protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D RI060_20540 helix-turn-helix domain-containing protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D RI060_41935 helix-turn-helix domain-containing protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D RI060_14475 LysR substrate-binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D RI060_41035 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D RI060_03275 nac; nitrogen assimilation transcriptional regulator NAC K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D RI060_04915 DeoR/GlpR family DNA-binding transcription regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D RI060_24715 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D RI060_32765 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D RI060_22890 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_27105 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_27170 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_32380 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_32700 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_35735 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_37260 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_38200 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_38450 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_38625 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_41290 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_41690 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_02855 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_04400 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_05285 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_08515 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_08620 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RI060_34245 LacI family DNA-binding transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D RI060_15965 LacI family DNA-binding transcriptional regulator K17640 bxlR; LacI family transcriptional regulator, xylobiose transport system transcriptional regulator D RI060_13560 GntR family transcriptional regulator K24969 dasR; GntR family transcriptional regulator, nutrient-sensing system regulator D RI060_16770 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RI060_27885 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RI060_42950 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RI060_05365 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D RI060_04265 FadR/GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RI060_29355 FadR/GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RI060_03290 FadR/GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RI060_34145 FadR/GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RI060_15555 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RI060_32215 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RI060_36185 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RI060_15320 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D RI060_17525 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RI060_38780 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RI060_01430 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RI060_01445 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RI060_34635 helix-turn-helix domain-containing protein K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D RI060_30070 TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RI060_31890 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D RI060_11345 Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D RI060_12455 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RI060_17350 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RI060_35375 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RI060_08100 LuxR C-terminal-related transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism D RI060_02445 response regulator transcription factor K24912 ramR; LuxR family transcriptional regulator, transcriptional activator for aerial hyphae formation D RI060_07485 LuxR C-terminal-related transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D RI060_06915 MarR family winged helix-turn-helix transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D RI060_06055 winged helix DNA-binding protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility D RI060_24925 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RI060_25855 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RI060_33925 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D RI060_19290 helix-turn-helix domain-containing protein K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D RI060_18205 MerR family transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator D RI060_37320 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D RI060_22950 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RI060_28620 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RI060_13685 Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D RI060_01040 Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D RI060_07900 allR; allantoin degradation transcriptional regulator AllR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D RI060_39510 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D RI060_39595 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D RI060_24650 IclR family transcriptional regulator C-terminal domain-containing protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D RI060_18820 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RI060_30565 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D RI060_17495 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RI060_17505 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RI060_10190 ArsR family transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D RI060_01495 metalloregulator ArsR/SmtB family transcription factor K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor D RI060_07425 metalloregulator ArsR/SmtB family transcription factor K21886 nmtR; ArsR family transcriptional regulator, nickel/cobalt-responsive transcriptional repressor D RI060_09785 metalloregulator ArsR/SmtB family transcription factor K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D RI060_10840 helix-turn-helix transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator D RI060_23935 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D RI060_15045 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RI060_06615 helix-turn-helix domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D RI060_35680 TOBE domain-containing protein K02019 modE; molybdate transport system regulatory protein D RI060_17765 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D RI060_28065 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator D RI060_13535 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator D RI060_13500 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_14405 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_15895 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_18855 wblA; transcriptional regulator WblA K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_25620 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_41020 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_05415 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_06000 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_13800 WhiB family transcriptional regulator K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D RI060_22720 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RI060_04805 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D RI060_33470 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RI060_07635 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RI060_39575 PucR family transcriptional regulator ligand-binding domain-containing protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RI060_40410 PucR family transcriptional regulator ligand-binding domain-containing protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D RI060_20095 BTAD domain-containing putative transcriptional regulator K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon D RI060_18405 AfsR/SARP family transcriptional regulator K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon D RI060_21150 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RI060_43340 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RI060_23300 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D RI060_34585 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D RI060_28325 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D RI060_38015 PaaX family transcriptional regulator C-terminal domain-containing protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D RI060_06340 PaaX family transcriptional regulator C-terminal domain-containing protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D RI060_09815 PaaX family transcriptional regulator C-terminal domain-containing protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D RI060_35100 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D RI060_04760 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D RI060_26050 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D RI060_31580 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor D RI060_10585 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR C 03021 Transcription machinery [BR:sjn03021] D RI060_23595 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RI060_37535 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RI060_16405 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RI060_16400 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RI060_35150 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RI060_28945 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D RI060_10500 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D RI060_13635 sigR; RNA polymerase sigma factor SigR K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_14050 sigE; RNA polymerase sigma factor SigE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_15215 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_15350 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_15360 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_15885 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_17780 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_20150 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_21175 sigM; RNA polymerase sigma factor SigM K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_22770 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_26020 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_27680 sigK; ECF RNA polymerase sigma factor SigK K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_33790 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_36200 RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_37315 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_40670 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_02280 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_02840 sigJ; RNA polymerase sigma factor SigJ K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_03025 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_03330 sigJ; RNA polymerase sigma factor SigJ K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_03570 RNA polymerase subunit sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_04185 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_07025 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_27615 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D RI060_13485 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D RI060_22055 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D RI060_22060 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D RI060_22480 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D RI060_25410 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D RI060_40810 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D RI060_41070 SigB/SigF/SigG family RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor D RI060_41205 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D RI060_07100 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D RI060_11450 whiG; RNA polymerase sigma factor WhiG K02405 fliA; RNA polymerase sigma factor FliA D RI060_06695 dpdE; protein DpdE K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D RI060_11030 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RI060_35090 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D RI060_16440 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D RI060_22505 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D RI060_41115 anti-sigma regulatory factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1] D RI060_22500 STAS domain-containing protein K17762 rsbS; rsbT antagonist protein RsbS D RI060_41120 STAS domain-containing protein K17762 rsbS; rsbT antagonist protein RsbS D RI060_22495 STAS domain-containing protein K17763 rsbR; rsbT co-antagonist protein RsbR D RI060_41125 STAS domain-containing protein K17763 rsbR; rsbT co-antagonist protein RsbR D RI060_03130 SpoIIE family protein phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D RI060_03125 alpha/beta hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ D RI060_18710 bldG; anti-sigma factor antagonist BldG K04749 rsbV; anti-sigma B factor antagonist D RI060_13480 anti-sigma regulatory factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D RI060_21510 ATP-binding protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D RI060_31580 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor D RI060_14915 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D RI060_12885 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RI060_39810 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:sjn03019] D RI060_19745 bifunctional GNAT family N-acetyltransferase/ATP-binding protein K13525 VCP; transitional endoplasmic reticulum ATPase D RI060_28085 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D RI060_11625 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RI060_30730 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D RI060_10910 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D RI060_07875 ribonuclease domain-containing protein K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D RI060_26885 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RI060_16800 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RI060_10530 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RI060_25270 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_01630 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_10950 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D RI060_12885 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RI060_39810 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D RI060_19305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_07045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_15920 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_23490 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_22765 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D RI060_27030 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D RI060_21195 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D RI060_32400 rapZ; RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ D RI060_34305 DEAD/DEAH box helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6] D RI060_22425 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D RI060_32065 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:sjn03011] D RI060_32075 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D RI060_11435 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D RI060_16280 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D RI060_35020 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D RI060_16225 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D RI060_21250 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D RI060_16385 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D RI060_16240 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D RI060_16115 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D RI060_16315 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D RI060_16180 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D RI060_16390 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D RI060_16185 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D RI060_16245 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RI060_18480 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D RI060_10955 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D RI060_11520 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D RI060_16265 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D RI060_18455 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RI060_21260 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D RI060_16290 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D RI060_28280 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D RI060_16430 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D RI060_16295 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D RI060_16310 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D RI060_16305 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D RI060_16250 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D RI060_16235 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D RI060_21265 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D RI060_16415 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D RI060_16435 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D RI060_16410 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D RI060_16120 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D RI060_16260 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D RI060_16215 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D RI060_16275 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D RI060_16170 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D RI060_16230 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D RI060_11500 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D RI060_34455 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D RI060_28090 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D RI060_16285 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D RI060_16300 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D RI060_16255 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D RI060_28095 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D RI060_18475 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RI060_11675 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D RI060_16270 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D RI060_16220 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D RI060_12870 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RI060_18465 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RI060_36880 type B 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D RI060_04065 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RI060_11630 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D RI060_16495 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RI060_18470 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D RI060_21115 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D RI060_34450 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D RI060_16190 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D RI060_25105 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D RI060_10905 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA C 03009 Ribosome biogenesis [BR:sjn03009] D RI060_11625 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RI060_26885 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RI060_19745 bifunctional GNAT family N-acetyltransferase/ATP-binding protein K13525 VCP; transitional endoplasmic reticulum ATPase D RI060_28465 era; GTPase Era K03595 era; GTPase D RI060_28100 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D RI060_31580 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor D RI060_11030 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RI060_35090 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D RI060_16440 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D RI060_24985 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RI060_35180 transcription antitermination factor NusB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D RI060_11650 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D RI060_28340 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D RI060_21140 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RI060_31495 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D RI060_24965 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D RI060_33450 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D RI060_23320 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D RI060_38745 methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D RI060_11400 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D RI060_34335 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RI060_33525 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D RI060_31590 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D RI060_15985 rimI; ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D RI060_24820 GNAT family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D RI060_07245 GNAT family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D RI060_12040 GNAT family protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] D RI060_11510 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D RI060_10855 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D RI060_28085 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] D RI060_35040 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D RI060_13660 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RI060_08325 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RI060_33570 der; ribosome biogenesis GTPase Der K03977 engA; GTPase D RI060_10625 hflX; GTPase HflX K03665 hflX; GTPase D RI060_12855 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RI060_34965 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RI060_10635 HD domain-containing protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D RI060_11010 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D RI060_11035 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D RI060_28185 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D RI060_28405 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D RI060_14360 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D RI060_11635 YceD family protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:sjn03016] D RI060_28360 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D RI060_07875 ribonuclease domain-containing protein K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D RI060_17640 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D RI060_03795 archease K24956 ZBTB8OS; protein archease D RI060_11780 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RI060_11055 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RI060_11530 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RI060_31575 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RI060_28225 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RI060_20420 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_04860 class I tRNA ligase family protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_05570 class I tRNA ligase family protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RI060_12910 DALR anticodon-binding domain-containing protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RI060_17665 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RI060_18125 phosphatidylglycerol lysyltransferase domain-containing protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D RI060_20475 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RI060_35035 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RI060_28640 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RI060_20280 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RI060_34875 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RI060_21470 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RI060_23315 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RI060_27970 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RI060_34985 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RI060_34470 pheS; phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RI060_34475 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RI060_33250 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RI060_15495 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RI060_17855 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RI060_22960 dtd; D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D RI060_28355 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RI060_34205 tRNA (adenine-N1)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D RI060_22555 trmB; tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D RI060_16165 truA; tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RI060_11005 truB; tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D RI060_31150 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_12130 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_12855 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RI060_10650 miaA; tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D RI060_05630 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D RI060_21120 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D RI060_26315 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D RI060_09420 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D RI060_23715 thpR; RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D RI060_00915 2'-5' RNA ligase family protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D RI060_21425 RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D RI060_17660 lysS; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RI060_21515 glycine--tRNA ligase K14164 glyQS; glycyl-tRNA synthetase [EC:6.1.1.14] D RI060_31670 ybaK; Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D RI060_22080 tadA; tRNA adenosine(34) deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D RI060_10670 miaB; tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D RI060_11505 trmD; tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RI060_34460 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D RI060_34335 RluA family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D RI060_12120 mnmA; tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D RI060_22955 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D RI060_33325 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D RI060_06635 queC; 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RI060_06625 queD; 6-carboxytetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RI060_06630 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RI060_18170 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D RI060_15990 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D RI060_15980 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D RI060_16030 tsaE; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D RI060_10950 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:sjn03012] D RI060_11020 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RI060_34445 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RI060_11430 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D RI060_16375 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RI060_35950 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RI060_16380 fusA; elongation factor G K02355 fusA; elongation factor G D RI060_34890 elongation factor G-like protein EF-G2 K02355 fusA; elongation factor G D RI060_06555 fusA; elongation factor G K02355 fusA; elongation factor G D RI060_12865 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D RI060_11420 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D RI060_12860 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RI060_39870 putative protein N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RI060_02505 methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RI060_25100 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D RI060_16195 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D RI060_37495 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D RI060_35085 efp; elongation factor P K02356 efp; elongation factor P D RI060_25920 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D RI060_23400 arfB; alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:sjn03110] D RI060_19250 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D RI060_18010 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D RI060_07665 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D RI060_27960 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D RI060_38505 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RI060_11660 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D RI060_19305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_07045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_15920 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_23490 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_19295 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RI060_28330 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RI060_19300 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D RI060_32110 RNA-binding S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D RI060_15925 groES; co-chaperone GroES K04078 groES; chaperonin GroES D RI060_26350 co-chaperone GroES K04078 groES; chaperonin GroES D RI060_18160 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D RI060_12830 atpB; F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D RI060_21490 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A D RI060_39420 hypA; hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D RI060_39445 hypB; hydrogenase nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D RI060_08990 S8 family serine peptidase K14645 K14645; serine protease [EC:3.4.21.-] D RI060_15385 glycoside hydrolase family 20 protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_26075 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_26930 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_01390 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_04280 family 20 glycosylhydrolase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D RI060_21000 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RI060_34975 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D RI060_12445 thioredoxin family protein K03671 TXN; thioredoxin D RI060_21160 trxA; thioredoxin K03671 TXN; thioredoxin D RI060_03685 trxA; thioredoxin K03671 TXN; thioredoxin D RI060_41840 thioredoxin family protein K03671 TXN; thioredoxin D RI060_12580 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin C 04131 Membrane trafficking [BR:sjn04131] D RI060_27985 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RI060_19745 bifunctional GNAT family N-acetyltransferase/ATP-binding protein K13525 VCP; transitional endoplasmic reticulum ATPase D RI060_29890 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D RI060_31310 ArsA-related P-loop ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D RI060_06285 glycoside hydrolase family 38 C-terminal domain-containing protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D RI060_32420 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RI060_01070 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RI060_23255 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D RI060_12550 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RI060_31980 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RI060_38505 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RI060_11660 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D RI060_35400 MFS transporter K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system [BR:sjn04121] D RI060_34230 ubiquitin-like protein Pup K13570 pup; prokaryotic ubiquitin-like protein Pup C 03051 Proteasome [BR:sjn03051] D RI060_38505 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RI060_11660 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D RI060_34240 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RI060_34235 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RI060_02040 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RI060_34220 arc; proteasome ATPase K13527 mpa; proteasome-associated ATPase D RI060_34255 pafA; Pup--protein ligase K13571 pafA; proteasome accessory factor A [EC:6.3.1.19] D RI060_34270 WYL domain-containing protein K13572 pafB; proteasome accessory factor B D RI060_34275 WYL domain-containing protein K13573 pafC; proteasome accessory factor C D RI060_34225 dop; depupylase/deamidase Dop K20814 dop; Pup amidohydrolase [EC:3.5.1.119] C 03032 DNA replication proteins [BR:sjn03032] D RI060_40865 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RI060_26530 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_26535 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_26040 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RI060_11725 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RI060_21110 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RI060_21275 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D RI060_28940 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RI060_21255 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_27430 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_29045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_43415 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_22800 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_31640 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_21105 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RI060_28265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RI060_18670 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RI060_33190 DEDDh family exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_08890 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_34860 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_22280 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RI060_30175 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73] D RI060_10545 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RI060_32035 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RI060_12085 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RI060_21080 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RI060_10415 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RI060_21085 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RI060_10485 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RI060_18680 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:sjn03036] D RI060_26530 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_26535 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_11625 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D RI060_18020 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2 D RI060_22340 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2 D RI060_26040 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RI060_11725 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RI060_21110 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D RI060_05420 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D RI060_10835 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D RI060_41035 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D RI060_12455 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RI060_17350 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RI060_35375 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RI060_11595 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D RI060_33515 segregation/condensation protein A K05896 scpA; segregation and condensation protein A D RI060_33520 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D RI060_25935 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RI060_31505 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D RI060_12985 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RI060_17245 FtsK/SpoIIIE domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RI060_21860 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RI060_27895 FtsK/SpoIIIE domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RI060_29105 FtsK/SpoIIIE domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RI060_10865 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D RI060_31540 FtsQ-type POTRA domain-containing protein K03589 ftsQ; cell division protein FtsQ D RI060_31530 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D RI060_25940 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RI060_31545 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RI060_09215 zapE; cell division protein ZapE K06916 zapE; cell division protein ZapE D RI060_30105 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D RI060_31560 sepF; cell division protein SepF K09772 sepF; cell division inhibitor SepF D RI060_33650 cell division protein SepF K09772 sepF; cell division inhibitor SepF D RI060_27990 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RI060_29315 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RI060_27995 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D RI060_28010 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D RI060_21145 ParA family protein K03496 parA; chromosome partitioning protein D RI060_33505 ParA family protein K03496 parA; chromosome partitioning protein D RI060_21150 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RI060_43340 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RI060_21140 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D RI060_14025 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D RI060_32410 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:sjn03400] D RI060_32275 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RI060_07415 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RI060_08310 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RI060_37330 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RI060_35880 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RI060_37975 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D RI060_33385 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D RI060_17955 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RI060_18815 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RI060_23595 DEAD/DEAH box helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RI060_14265 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RI060_22755 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RI060_10515 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RI060_27630 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RI060_10295 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RI060_38750 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D RI060_36240 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D RI060_17340 UdgX family uracil-DNA binding protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RI060_32125 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RI060_07420 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RI060_08315 Ada metal-binding domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RI060_14075 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D RI060_36850 DNA-formamidopyrimidine glycosylase family protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RI060_04205 Fpg/Nei family DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RI060_11620 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RI060_27840 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D RI060_10820 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D RI060_24840 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RI060_07700 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RI060_31385 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RI060_05945 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RI060_12085 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D RI060_32035 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D RI060_17405 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RI060_32360 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RI060_04080 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D RI060_32290 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D RI060_32395 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D RI060_13810 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_13835 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_15730 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RI060_16405 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D RI060_16400 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D RI060_37535 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D RI060_35150 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D RI060_25195 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D RI060_14380 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D RI060_14385 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D RI060_22800 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_31640 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D RI060_21105 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D RI060_28265 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D RI060_18670 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D RI060_33190 DEDDh family exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_08890 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_34860 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D RI060_22280 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D RI060_21255 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_27430 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_29045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_43415 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_26540 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] D RI060_27220 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D RI060_10780 recA; recombinase RecA K03553 recA; recombination protein RecA D RI060_34935 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D RI060_34940 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RI060_34930 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RI060_35165 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RI060_36145 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 D RI060_36140 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RI060_17925 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D RI060_21095 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D RI060_11655 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D RI060_28610 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D RI060_19005 recR; recombination mediator RecR K06187 recR; recombination protein RecR D RI060_33460 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D RI060_22110 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D RI060_13175 Ku protein K10979 ku; DNA end-binding protein Ku D RI060_13180 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D RI060_41230 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D RI060_07205 ligD; non-homologous end-joining DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D RI060_21080 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RI060_10415 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RI060_21085 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RI060_10485 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RI060_18680 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RI060_26040 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RI060_11725 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D RI060_16800 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RI060_10530 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RI060_35665 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D RI060_10590 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D RI060_33675 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RI060_10775 recX; recombination regulator RecX K03565 recX; regulatory protein D RI060_42385 ATP-dependent helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D RI060_10595 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D RI060_10815 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D RI060_33490 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D RI060_13580 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RI060_10580 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RI060_13585 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:sjn03029] D RI060_11020 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D RI060_34445 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D RI060_11430 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D RI060_16375 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RI060_35950 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RI060_16380 fusA; elongation factor G K02355 fusA; elongation factor G D RI060_34890 elongation factor G-like protein EF-G2 K02355 fusA; elongation factor G D RI060_06555 fusA; elongation factor G K02355 fusA; elongation factor G D RI060_28465 era; GTPase Era K03595 era; GTPase D RI060_33250 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RI060_28225 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RI060_20475 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D RI060_28640 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RI060_12910 DALR anticodon-binding domain-containing protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RI060_17665 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RI060_26720 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RI060_36280 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RI060_12070 gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RI060_12060 gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RI060_12075 gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RI060_21255 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_27430 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_29045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_43415 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D RI060_19305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_07045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_19300 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D RI060_15920 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_23490 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_15925 groES; co-chaperone GroES K04078 groES; chaperonin GroES D RI060_26350 co-chaperone GroES K04078 groES; chaperonin GroES D RI060_19295 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RI060_28330 dnaJ; molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D RI060_31150 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_12130 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_14025 Mrp/NBP35 family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D RI060_32540 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141] D RI060_32555 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9] D RI060_21130 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_26565 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_21495 SCO family protein K07152 SCO1; protein SCO1 D RI060_38505 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RI060_11660 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:sjn02000] D RI060_05235 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D RI060_05240 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D RI060_02435 ABC transporter ATP-binding protein K24910 ramA; ATP-binding cassette, subfamily B, bacterial RamA/AmfB D RI060_28955 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D RI060_28950 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D RI060_12365 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RI060_12370 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RI060_27065 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RI060_32185 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RI060_36915 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RI060_01120 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RI060_01695 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RI060_03145 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D RI060_21405 cydD; thiol reductant ABC exporter subunit CydD K16014 cydCD; ATP-binding cassette, subfamily C, bacterial CydCD D RI060_12380 ABC transporter ATP-binding protein K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D RI060_07445 ABC-F family ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein D RI060_24995 ABC-F family ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein D RI060_33315 FHA domain-containing protein K21397 K21397; ABC transport system ATP-binding/permease protein D RI060_40765 FHA domain-containing protein K21397 K21397; ABC transport system ATP-binding/permease protein D RI060_05015 ABC transporter ATP-binding protein K02021 ABC.MR; putative ABC transport system ATP-binding protein D RI060_35695 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D RI060_35690 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D RI060_35685 ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RI060_16780 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_27805 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_36930 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_01750 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_01760 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_05665 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_08755 aliphatic sulfonate ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D RI060_16785 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_27800 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_36940 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_01740 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_05605 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_08765 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D RI060_16790 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_27795 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_36935 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_01745 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_05610 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_08760 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RI060_11395 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D RI060_11390 iron ABC transporter permease K02063 thiP; thiamine transport system permease protein D RI060_11385 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D RI060_11210 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D RI060_11195 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein D RI060_11200 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein D RI060_11205 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D RI060_39610 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D RI060_40425 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D RI060_39625 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D RI060_40440 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D RI060_39620 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D RI060_40435 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D RI060_40430 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D RI060_39615 ABC transporter ATP-binding protein K11080 attA1; mannopine transport system ATP-binding protein D RI060_15575 ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RI060_34360 ABC transporter permease/substrate binding protein K02001 proW; glycine betaine/proline transport system permease protein D RI060_39025 ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D RI060_15580 ABC transporter permease subunit K02001 proW; glycine betaine/proline transport system permease protein D RI060_39020 ABC transporter permease subunit K02001 proW; glycine betaine/proline transport system permease protein D RI060_15585 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D RI060_34355 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D RI060_39015 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D RI060_26180 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D RI060_28440 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D RI060_09055 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D RI060_26185 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_26195 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_28430 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_28435 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_09060 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D RI060_09065 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein D RI060_26190 betaine/proline/choline family ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D RI060_28425 ATP-binding cassette domain-containing protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D RI060_09070 ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D RI060_13690 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D RI060_23340 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_33870 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_05205 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_27720 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_27730 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_30605 extracellular solute-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D RI060_30610 sugar ABC transporter permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D RI060_30615 carbohydrate ABC transporter permease K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D RI060_35715 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D RI060_09435 ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D RI060_38560 ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D RI060_35720 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D RI060_38555 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D RI060_09430 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D RI060_35725 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D RI060_38550 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D RI060_09425 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D RI060_25900 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein D RI060_32485 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein D RI060_25895 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein D RI060_32490 ABC transporter permease subunit K10233 aglF; alpha-glucoside transport system permease protein D RI060_25890 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein D RI060_32495 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein D RI060_20365 extracellular solute-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D RI060_32475 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D RI060_05220 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D RI060_05215 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D RI060_05210 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D RI060_09535 ngcE; N-acetylglucosamine/diacetylchitobiose ABC transporter substrate-binding protein K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein D RI060_09530 sugar ABC transporter permease K10201 ngcF; N-acetylglucosamine transport system permease protein D RI060_09525 carbohydrate ABC transporter permease K10202 ngcG; N-acetylglucosamine transport system permease protein D RI060_26865 extracellular solute-binding protein K10240 cebE; cellobiose transport system substrate-binding protein D RI060_32705 extracellular solute-binding protein K10240 cebE; cellobiose transport system substrate-binding protein D RI060_06305 extracellular solute-binding protein K10240 cebE; cellobiose transport system substrate-binding protein D RI060_26860 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein D RI060_32710 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein D RI060_06310 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein D RI060_26855 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein D RI060_32715 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein D RI060_06315 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein D RI060_13555 extracellular solute-binding protein K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein D RI060_26060 extracellular solute-binding protein K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein D RI060_13550 sugar ABC transporter permease K17330 dasB; N,N'-diacetylchitobiose transport system permease protein D RI060_26065 sugar ABC transporter permease K17330 dasB; N,N'-diacetylchitobiose transport system permease protein D RI060_13545 carbohydrate ABC transporter permease K17331 dasC; N,N'-diacetylchitobiose transport system permease protein D RI060_26070 carbohydrate ABC transporter permease K17331 dasC; N,N'-diacetylchitobiose transport system permease protein D RI060_09155 extracellular solute-binding protein K17244 chiE; putative chitobiose transport system substrate-binding protein D RI060_09160 sugar ABC transporter permease K17245 chiF; putative chitobiose transport system permease protein D RI060_09165 carbohydrate ABC transporter permease K17246 chiG; putative chitobiose transport system permease protein D RI060_02085 extracellular solute-binding protein K17241 aguE; alpha-1,4-digalacturonate transport system substrate-binding protein D RI060_02080 sugar ABC transporter permease K17242 aguF; alpha-1,4-digalacturonate transport system permease protein D RI060_02075 carbohydrate ABC transporter permease K17243 aguG; alpha-1,4-digalacturonate transport system permease protein D RI060_38620 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D RI060_09560 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D RI060_11135 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D RI060_38610 ABC transporter permease subunit K17319 lplB; putative aldouronate transport system permease protein D RI060_09570 ABC transporter permease subunit K17319 lplB; putative aldouronate transport system permease protein D RI060_11130 ABC transporter permease subunit K17319 lplB; putative aldouronate transport system permease protein D RI060_38615 carbohydrate ABC transporter permease K17320 lplC; putative aldouronate transport system permease protein D RI060_09565 carbohydrate ABC transporter permease K17320 lplC; putative aldouronate transport system permease protein D RI060_11125 carbohydrate ABC transporter permease K17320 lplC; putative aldouronate transport system permease protein D RI060_17295 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein D RI060_19285 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein D RI060_09515 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein D RI060_09705 substrate-binding domain-containing protein K10543 xylF; D-xylose transport system substrate-binding protein D RI060_09505 sugar ABC transporter permease K10544 xylH; D-xylose transport system permease protein D RI060_09715 sugar ABC transporter permease K10544 xylH; D-xylose transport system permease protein D RI060_09510 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D RI060_09710 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D RI060_29600 chvE; sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein D RI060_29590 gguB; sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein D RI060_29595 gguA; sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_19695 sugar ABC transporter substrate-binding protein K10552 frcB; fructose transport system substrate-binding protein D RI060_19700 ABC transporter permease K10553 frcC; fructose transport system permease protein D RI060_19705 ATP-binding cassette domain-containing protein K10554 frcA; fructose transport system ATP-binding protein D RI060_02870 rhaS; rhamnose ABC transporter substrate-binding protein K10559 rhaS; rhamnose transport system substrate-binding protein D RI060_02880 ABC transporter permease K10560 rhaP; rhamnose transport system permease protein D RI060_02875 ABC transporter permease K10561 rhaQ; rhamnose transport system permease protein D RI060_02885 sugar ABC transporter ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D RI060_27160 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_36995 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_39990 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_04260 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_06850 substrate-binding domain-containing protein K10439 rbsB; ribose transport system substrate-binding protein D RI060_36990 ABC transporter permease K10440 rbsC; ribose transport system permease protein D RI060_39980 ABC transporter permease K10440 rbsC; ribose transport system permease protein D RI060_06855 ABC transporter permease K10440 rbsC; ribose transport system permease protein D RI060_27165 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RI060_36985 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RI060_39985 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RI060_06860 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D RI060_32760 sugar ABC transporter substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein D RI060_09720 sugar ABC transporter substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein D RI060_32755 sugar ABC transporter permease K10228 smoF; polyol transport system permease protein D RI060_32750 carbohydrate ABC transporter permease K10229 smoG; polyol transport system permease protein D RI060_09125 ABC transporter substrate-binding protein K17234 araN; arabinooligosaccharide transport system substrate-binding protein D RI060_09120 sugar ABC transporter permease K17235 araP; arabinooligosaccharide transport system permease protein D RI060_09115 carbohydrate ABC transporter permease K17236 araQ; arabinooligosaccharide transport system permease protein D RI060_34820 extracellular solute-binding protein K25676 yesO; pectin-derived oligosaccharide transport system substrate-binding protein D RI060_38675 ABC transporter substrate-binding protein K25676 yesO; pectin-derived oligosaccharide transport system substrate-binding protein D RI060_34825 sugar ABC transporter permease K25677 yesP; pectin-derived oligosaccharide transport system permease protein D RI060_38680 sugar ABC transporter permease K25677 yesP; pectin-derived oligosaccharide transport system permease protein D RI060_34830 carbohydrate ABC transporter permease K25678 yesQ; pectin-derived oligosaccharide transport system permease protein D RI060_38685 carbohydrate ABC transporter permease K25678 yesQ; pectin-derived oligosaccharide transport system permease protein D RI060_15260 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D RI060_15265 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D RI060_15250 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D RI060_15245 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D RI060_15255 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D RI060_30245 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30250 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30255 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30260 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30265 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30270 MlaD family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D RI060_30235 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RI060_30240 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D RI060_30230 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D RI060_30275 hypothetical protein K18481 mas; Mce-associated membrane protein D RI060_30280 hypothetical protein K18481 mas; Mce-associated membrane protein D RI060_12495 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_23450 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_23820 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_26830 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_27535 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_27745 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_28040 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_29465 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_32860 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_37695 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_39285 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_39730 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_41310 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_41695 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_41990 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_02230 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_04395 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_04820 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_08365 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_08610 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_08625 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D RI060_12500 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_23825 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_26835 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_27530 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_27740 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_28035 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_29470 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_32825 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_37690 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_39280 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_39725 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_41305 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_41700 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_41985 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_02220 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_04390 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_04825 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_08370 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_08605 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_08630 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_08880 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D RI060_12505 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_23830 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_26840 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_27525 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_27735 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_28030 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_29475 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_32830 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_37685 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_39275 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_39720 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_41300 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_41705 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_41980 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_02225 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_04385 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_08375 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_08600 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_08635 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_08875 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_04830 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D RI060_01935 substrate-binding domain-containing protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D RI060_05335 sugar ABC transporter substrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D RI060_09030 substrate-binding domain-containing protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D RI060_04250 ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein D RI060_05330 ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein D RI060_04255 sugar ABC transporter ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_05325 ATP-binding cassette domain-containing protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D RI060_19020 substrate-binding domain-containing protein K02040 pstS; phosphate transport system substrate-binding protein D RI060_22750 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D RI060_22745 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D RI060_22740 pstA; phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein D RI060_22735 pstB; phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RI060_10740 glutamate ABC transporter substrate-binding protein K10005 gluB; glutamate transport system substrate-binding protein D RI060_10745 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein D RI060_10750 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein D RI060_07685 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1] D RI060_10735 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1] D RI060_23970 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_32020 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_38335 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_03450 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D RI060_32015 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_38315 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_03460 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D RI060_32010 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_38320 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_03455 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D RI060_32005 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_38325 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_03470 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D RI060_32000 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_33590 ATP-binding cassette domain-containing protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_38330 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_03465 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D RI060_34690 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D RI060_34685 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein D RI060_34680 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein D RI060_40675 substrate-binding domain-containing protein K11959 urtA; urea transport system substrate-binding protein D RI060_13365 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RI060_26710 ehuB; ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RI060_27450 glutamate ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RI060_32345 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RI060_40265 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RI060_40280 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RI060_05645 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RI060_13370 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RI060_26700 ehuD; ectoine/hydroxyectoine ABC transporter permease subunit EhuD K02029 ABC.PA.P; polar amino acid transport system permease protein D RI060_26705 ehuC; ectoine/hydroxyectoine ABC transporter permease subunit EhuC K02029 ABC.PA.P; polar amino acid transport system permease protein D RI060_32340 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RI060_40250 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RI060_40270 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RI060_05640 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D RI060_13375 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RI060_26695 ehuA; ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RI060_32335 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RI060_05635 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RI060_40275 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D RI060_14205 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D RI060_14200 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D RI060_14195 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D RI060_14190 ABC transporter ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D RI060_14185 dipeptide ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D RI060_21015 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_34180 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_34185 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_35875 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_38250 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_38405 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_39505 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_40465 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_01080 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_06530 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_09995 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_10970 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_11950 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_12185 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_14220 ABC transporter family substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_15440 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_28555 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_13905 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D RI060_13895 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_28550 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_38255 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_38410 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_39500 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_40460 ABC transporter permease subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_01085 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_03075 ABC transporter permease subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_09990 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_10975 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_11955 ABC transporter permease subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_12180 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D RI060_13900 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_28545 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_38245 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_38415 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_39495 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_09985 ABC transporter permease subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_10980 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_12190 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D RI060_13890 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_38260 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_01090 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_09980 ATP-binding cassette domain-containing protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_10985 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_12175 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_11960 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_38420 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_39490 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D RI060_28540 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RI060_38265 dipeptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RI060_01095 ATP-binding cassette domain-containing protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RI060_12170 dipeptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D RI060_07940 iron-siderophore ABC transporter substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D RI060_07945 iron ABC transporter permease K23228 fhuB; ferric hydroxamate transport system permease protein D RI060_07935 ABC transporter ATP-binding protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D RI060_30435 heme ABC transporter ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D RI060_26960 ABC transporter substrate-binding protein K25287 desE; iron-desferrioxamine transport system substrate-binding protein D RI060_05030 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D RI060_33425 iron chelate uptake ABC transporter family permease subunit K23186 fepD; iron-siderophore transport system permease protein D RI060_05045 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D RI060_33430 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein D RI060_05040 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein D RI060_33435 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D RI060_05035 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D RI060_36045 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D RI060_36050 iron chelate uptake ABC transporter family permease subunit K02015 ABC.FEV.P; iron complex transport system permease protein D RI060_33355 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RI060_36055 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RI060_28635 metal ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D RI060_28625 metal ABC transporter permease K09816 znuB; zinc transport system permease protein D RI060_28630 metal ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D RI060_03095 energy-coupling factor ABC transporter substrate-binding protein K02009 cbiN; cobalt/nickel transport protein D RI060_24935 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D RI060_03100 cbiQ; cobalt ECF transporter T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D RI060_24940 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein D RI060_03090 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein D RI060_24930 ABC transporter ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RI060_03105 ATP-binding cassette domain-containing protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RI060_27815 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D RI060_30005 ECF transporter S component K16927 cbrT; energy-coupling factor transport system substrate-specific component D RI060_30015 energy-coupling factor transporter transmembrane component T K16785 ecfT; energy-coupling factor transport system permease protein D RI060_30010 ATP-binding cassette domain-containing protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RI060_02970 zinc ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D RI060_02980 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D RI060_02975 metal ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D RI060_25835 ABC transporter permease K09692 tagG; teichoic acid transport system permease protein D RI060_05780 ABC transporter permease K09692 tagG; teichoic acid transport system permease protein D RI060_25830 ABC transporter ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D RI060_05775 ABC transporter ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D RI060_20640 ABC transporter permease K25140 drrB; daunorubicin/doxorubicin transport system permease protein D RI060_20635 ATP-binding cassette domain-containing protein K25141 drrA; daunorubicin/doxorubicin transport system ATP-binding protein D RI060_16090 ABC transporter permease K18233 oleC5; oleandomycin transport system permease protein D RI060_30500 ABC transporter permease K18233 oleC5; oleandomycin transport system permease protein D RI060_16095 ATP-binding cassette domain-containing protein K18232 oleC4; oleandomycin transport system ATP-binding protein D RI060_30505 ATP-binding cassette domain-containing protein K18232 oleC4; oleandomycin transport system ATP-binding protein D RI060_19080 ABC transporter permease K25149 narB; polyether ionophore transport system permease protein D RI060_19075 ABC transporter ATP-binding protein K25150 narA; polyether ionophore transport system ATP-binding protein D RI060_25940 ftsX; permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein D RI060_25935 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D RI060_26375 ABC transporter permease K25154 evrC; viologen exporter family transport system permease protein D RI060_08395 ABC-2 family transporter protein K25154 evrC; viologen exporter family transport system permease protein D RI060_26370 ABC-2 family transporter protein K25155 evrB; viologen exporter family transport system permease protein D RI060_08390 ABC-2 family transporter protein K25155 evrB; viologen exporter family transport system permease protein D RI060_26380 ATP-binding cassette domain-containing protein K25156 evrA; viologen exporter family transport system ATP-binding protein D RI060_08385 ATP-binding cassette domain-containing protein K25156 evrA; viologen exporter family transport system ATP-binding protein D RI060_12355 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_12755 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_14145 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_14920 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_16690 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_17865 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_19475 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_21440 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_21450 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_22320 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_22635 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_23780 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_23945 transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_24355 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_27290 ABC transporter permease subunit K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_31660 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_32560 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_33805 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_35000 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_36230 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_01710 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_04565 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_12695 ABC transporter permease subunit K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_18240 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D RI060_12360 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_12690 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_12700 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_12750 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_14150 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_14925 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_16695 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_17870 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_18245 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_19480 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_21435 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_21445 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_22325 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_22640 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_22780 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_23775 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_23950 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_24350 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_27285 alpha/beta fold hydrolase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_31655 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_32565 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_33810 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_35005 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_36225 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_38905 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_01705 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_04560 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_09280 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_10230 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RI060_18565 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_19895 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_25190 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_25300 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_27410 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_31850 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_32460 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_36415 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_02930 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_04930 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_07280 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D RI060_14465 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_18560 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_19900 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_25185 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_25305 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_27560 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_31860 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_32465 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_36420 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_02925 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_04935 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_07285 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_11355 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RI060_32595 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D RI060_06935 bile acid:sodium symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D RI060_21270 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D RI060_01975 sugar porter family MFS transporter K06609 iolT; MFS transporter, SP family, major inositol transporter D RI060_38460 MFS transporter K06610 iolF; MFS transporter, SP family, inositol transporter D RI060_39680 MFS transporter K08174 glcP; MFS transporter, FHS family, glucose/mannose:H+ symporter D RI060_37425 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D RI060_06145 MFS transporter K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D RI060_29945 proP; glycine betaine/L-proline transporter ProP K03762 proP; MFS transporter, MHS family, proline/betaine transporter D RI060_03200 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D RI060_03255 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D RI060_06105 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D RI060_28880 MFS transporter K08173 ydfJ; MFS transporter, MHS family, metabolite:H+ symporter D RI060_33285 CynX/NimT family MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D RI060_26005 nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D RI060_30370 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D RI060_03170 MFS transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein D RI060_11880 MFS transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein D RI060_21295 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D RI060_24565 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D RI060_25225 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D RI060_30530 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D RI060_37215 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D RI060_17285 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D RI060_05585 MFS transporter K08152 lmrP; MFS transporter, DHA1 family, multidrug resistance protein B D RI060_33640 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D RI060_34640 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D RI060_11975 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D RI060_29370 MFS transporter K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein D RI060_13990 MFS transporter K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein D RI060_41250 MFS transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D RI060_15200 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D RI060_35400 MFS transporter K06902 UMF1; MFS transporter, UMF1 family D RI060_35595 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D RI060_10390 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D RI060_35600 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D RI060_26305 PTS transporter subunit EIIC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D RI060_26310 PTS glucose/sucrose transporter subunit IIB K02803 nagEb; N-acetylglucosamine PTS system EIIB component [EC:2.7.1.193] D RI060_24725 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D RI060_25675 fructose-specific PTS transporter subunit EIIC K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191] D RI060_39910 PTS fructose transporter subunit IIA K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D RI060_34160 MIP/aquaporin family protein K02440 glpF; glycerol uptake facilitator D RI060_35550 MIP/aquaporin family protein K02440 glpF; glycerol uptake facilitator D RI060_20645 potassium channel family protein K10716 kch; voltage-gated potassium channel D RI060_29755 potassium channel family protein K10716 kch; voltage-gated potassium channel D RI060_28460 ammonium transporter K03320 amt; ammonium transporter, Amt family D RI060_11560 ammonium transporter K03320 amt; ammonium transporter, Amt family D RI060_27295 von Willebrand factor type A domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D RI060_00850 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D RI060_07975 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D RI060_24760 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D RI060_27545 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D RI060_14000 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D RI060_32250 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D RI060_34115 corA; magnesium/cobalt transporter CorA K03284 corA; magnesium transporter D RI060_39755 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter D RI060_39760 crcB; fluoride efflux transporter CrcB K06199 crcB; fluoride exporter D RI060_05280 TMEM175 family protein K24915 TMEM175; TMEM175 potassium channel family protein D RI060_28410 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_35325 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_35330 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_36260 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_36265 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_09945 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_09950 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_27830 amino acid permease K11735 gabP; GABA permease D RI060_39775 amino acid permease K11738 ansP; L-asparagine permease D RI060_05900 amino acid permease K11738 ansP; L-asparagine permease D RI060_34390 eat; ethanolamine permease K16238 eat; ethanolamine permease D RI060_05815 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D RI060_32620 multidrug efflux SMR transporter K03297 emrE; small multidrug resistance pump D RI060_13665 multidrug efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE D RI060_26355 multidrug efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE D RI060_27595 EamA family transporter K15269 pecM; probable blue pigment (indigoidine) exporter D RI060_35795 EamA family transporter K03298 TC.DME; drug/metabolite transporter, DME family D RI060_23845 EamA family transporter K11939 rhtA; inner membrane transporter RhtA D RI060_03875 EamA family transporter K11939 rhtA; inner membrane transporter RhtA D RI060_17625 YnfA family protein K09771 TC.SMR3; small multidrug resistance family-3 protein D RI060_12515 gluconate:H+ symporter K06155 gntT; Gnt-I system high-affinity gluconate transporter D RI060_14795 gluconate:H+ symporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D RI060_34035 gluconate:H+ symporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D RI060_25645 L-lactate permease K03303 lutP; lactate permease D RI060_32315 ionic transporter y4hA K07300 chaA; Ca2+:H+ antiporter D RI060_33225 cation acetate symporter K14393 actP; cation/acetate symporter D RI060_04060 cation acetate symporter K14393 actP; cation/acetate symporter D RI060_10460 cation acetate symporter K14393 actP; cation/acetate symporter D RI060_25160 cation acetate symporter K14393 actP; cation/acetate symporter D RI060_03440 cation acetate symporter K14393 actP; cation/acetate symporter D RI060_12480 cation:dicarboxylase symporter family transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D RI060_36905 cation:dicarboxylase symporter family transporter K11103 dctA; aerobic C4-dicarboxylate transport protein D RI060_18785 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D RI060_13470 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D RI060_31600 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D RI060_37765 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D RI060_17570 cation:proton antiporter K24160 NHA1; sodium/hydrogen antiporter D RI060_24785 potassium/proton antiporter K11105 cvrA; potassium/hydrogen antiporter D RI060_00820 NAD(P)H-dependent oxidoreductase K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D RI060_40305 cation:proton antiporter regulatory subunit K07228 khtT; K+:H+ antiporter subunit KhtT D RI060_10705 cation:proton antiporter regulatory subunit K07228 khtT; K+:H+ antiporter subunit KhtT D RI060_38470 cation:proton antiporter K26732 khtU; K+:H+ antiporter subunit KhtU D RI060_40300 cation:proton antiporter K26732 khtU; K+:H+ antiporter subunit KhtU D RI060_10710 cation:proton antiporter K26732 khtU; K+:H+ antiporter subunit KhtU D RI060_10255 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D RI060_10260 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D RI060_08005 nucleobase:cation symporter-2 family protein K24206 uacT; uric acid transporter D RI060_23690 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D RI060_32920 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D RI060_08235 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D RI060_18210 ion channel protein K03281 clcA; chloride channel protein, CIC family D RI060_02035 HoxN/HupN/NixA family nickel/cobalt transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D RI060_17485 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D RI060_31310 ArsA-related P-loop ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D RI060_02580 arsenic transporter K03893 arsB; arsenical pump membrane protein D RI060_17500 arsB; ACR3 family arsenite efflux transporter K03325 ACR3; arsenite transporter D RI060_21185 murJ; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D RI060_27335 lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase D RI060_15225 AEC family transporter K13936 mdcF; malonate transporter and related proteins D RI060_41040 LysE/ArgO family amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO D RI060_15330 leuE; leucine efflux protein LeuE K11250 leuE; leucine efflux protein D RI060_10805 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D RI060_10800 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D RI060_38635 tripartite tricarboxylate transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D RI060_38640 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D RI060_38645 tripartite tricarboxylate transporter substrate binding protein K07795 tctC; putative tricarboxylic transport membrane protein D RI060_05085 tripartite tricarboxylate transporter substrate binding protein K07795 tctC; putative tricarboxylic transport membrane protein D RI060_43425 VUT family protein K09125 yhhQ; queuosine precursor transporter D RI060_06700 VUT family protein K09125 yhhQ; queuosine precursor transporter D RI060_31830 VIT1/CCC1 transporter family protein K22736 VIT; vacuolar iron transporter family protein D RI060_13975 MarC family protein K05595 marC; multiple antibiotic resistance protein D RI060_31530 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D RI060_29890 TMEM165/GDT1 family protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D RI060_30420 efeU; iron uptake transporter permease EfeU K07243 FTR; high-affinity iron transporter D RI060_30430 efeO; iron uptake system protein EfeO K07224 efeO; iron uptake system component EfeO D RI060_30425 efeB; iron uptake transporter deferrochelatase/peroxidase subunit K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D RI060_33775 nickel transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein D RI060_18700 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D RI060_17440 cytochrome c biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D RI060_35295 nicotinamide mononucleotide transporter family protein K03811 pnuC; nicotinamide mononucleotide transporter D RI060_08020 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D RI060_21485 copper resistance protein CopC K14166 ycnJ; copper transport protein D RI060_22150 copper resistance protein CopC K14166 ycnJ; copper transport protein C 02044 Secretion system [BR:sjn02044] D RI060_16925 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RI060_14725 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D RI060_14720 AAA family ATPase K02282 cpaE; pilus assembly protein CpaE D RI060_14705 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D RI060_18745 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D RI060_14700 type II secretion system F family protein K12510 tadB; tight adherence protein B D RI060_18740 type II secretion system F family protein K12510 tadB; tight adherence protein B D RI060_14695 DUF5936 domain-containing protein K12511 tadC; tight adherence protein C D RI060_31565 YggT family protein K02221 yggT; YggT family protein D RI060_28240 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA D RI060_28245 ComEC/Rec2 family competence protein K02238 comEC; competence protein ComEC D RI060_25785 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D RI060_34950 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D RI060_16445 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D RI060_34955 secF; protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D RI060_32435 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D RI060_16210 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D RI060_11545 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RI060_11575 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D RI060_34945 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D RI060_21130 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_26565 YidC/Oxa1 family membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D RI060_34290 tatA; Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA D RI060_38510 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D RI060_14035 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB D RI060_34295 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:sjn02042] D RI060_28410 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_35325 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_35330 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_36260 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_36265 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_09945 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_09950 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RI060_14855 hemolysin III family protein K11068 hlyIII; hemolysin III D RI060_00605 hemolysin III family protein K11068 hlyIII; hemolysin III D RI060_06140 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D RI060_27570 beta-N-acetylglucosaminidase domain-containing protein K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 02022 Two-component system [BR:sjn02022] D RI060_23285 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D RI060_23290 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3 D RI060_10280 DUF4118 domain-containing protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D RI060_10275 response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D RI060_17600 HAMP domain-containing sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D RI060_22870 HAMP domain-containing sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D RI060_17605 response regulator transcription factor K07669 mprA; two-component system, OmpR family, response regulator MprA D RI060_22875 response regulator transcription factor K07669 mprA; two-component system, OmpR family, response regulator MprA D RI060_15160 HAMP domain-containing sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_25750 mtrB; MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_08855 HAMP domain-containing sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D RI060_25745 mtrA; two-component system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA D RI060_21990 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D RI060_09075 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D RI060_18970 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D RI060_21985 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D RI060_31220 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D RI060_09080 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator D RI060_10700 sensor histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D RI060_14140 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RI060_22315 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D RI060_22310 response regulator transcription factor K07693 desR; two-component system, NarL family, response regulator DesR D RI060_12485 sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D RI060_05080 ATP-binding protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D RI060_10450 sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D RI060_36610 histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D RI060_39455 enoyl-CoA hydratase-related protein K19640 hypX; putative two-component system protein, hydrogenase maturation factor HypX/HoxX D RI060_13505 PAS domain-containing sensor histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] D RI060_31995 response regulator K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:sjn02035] D RI060_11450 whiG; RNA polymerase sigma factor WhiG K02405 fliA; RNA polymerase sigma factor FliA D RI060_16925 A24 family peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D RI060_14725 cpaB; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D RI060_14720 AAA family ATPase K02282 cpaE; pilus assembly protein CpaE D RI060_14705 CpaF family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D RI060_18745 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:sjn04812] D RI060_27990 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RI060_29315 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RI060_31545 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RI060_21145 ParA family protein K03496 parA; chromosome partitioning protein D RI060_33505 ParA family protein K03496 parA; chromosome partitioning protein D RI060_21150 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RI060_43340 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:sjn04147] D RI060_38505 htpG; molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D RI060_11660 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG D RI060_25270 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_01630 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RI060_32420 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RI060_01070 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D RI060_32425 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RI060_12550 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RI060_31980 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D RI060_21000 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D RI060_25465 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D RI060_15920 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_23490 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D RI060_19305 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_07045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D RI060_32450 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_06415 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D RI060_14175 prolyl oligopeptidase family serine peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D RI060_24215 SMP-30/gluconolactonase/LRE family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D RI060_15875 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RI060_15880 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RI060_16375 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RI060_35950 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D RI060_19745 bifunctional GNAT family N-acetyltransferase/ATP-binding protein K13525 VCP; transitional endoplasmic reticulum ATPase D RI060_28355 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D RI060_06935 bile acid:sodium symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D RI060_17300 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_28290 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_31295 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_33960 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_39950 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_40495 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_41145 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_03540 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_06945 AMP-dependent synthetase/ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D RI060_12670 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_17305 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25340 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_29990 steroid 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_31895 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_39940 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_40560 thiolase domain-containing protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_03550 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_05915 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RI060_25680 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RI060_16205 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RI060_34960 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RI060_34625 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RI060_34620 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RI060_08150 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RI060_21325 cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D RI060_05990 ddaH; N(G),N(G)-dimethylarginine dimethylaminohydrolase K01482 DDAH; dimethylargininase [EC:3.5.3.18] D RI060_07625 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D RI060_16760 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D RI060_03285 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D RI060_04275 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D RI060_06280 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D RI060_25035 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D RI060_12425 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D RI060_41160 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D RI060_34155 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D RI060_35545 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30] D RI060_30575 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30695 glnII; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_30905 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_34400 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_41955 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_05485 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RI060_17740 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RI060_26205 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D RI060_06990 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D RI060_27715 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_01605 C-terminal binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_11980 serA; phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RI060_15650 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D RI060_30995 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_08925 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RI060_38175 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D RI060_01660 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D RI060_05675 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D RI060_32525 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RI060_06405 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D RI060_32430 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RI060_23255 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:sjn02048] D RI060_42110 type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1 D RI060_42105 cas7c; type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2 D RI060_26530 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_26535 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RI060_29135 HNH endonuclease signature motif containing protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D RI060_20955 restriction endonuclease K07448 mrr; restriction system protein D RI060_22175 restriction endonuclease K07448 mrr; restriction system protein D RI060_03870 restriction endonuclease K07448 mrr; restriction system protein D RI060_24620 type II toxin-antitoxin system PemK/MazF family toxin K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D RI060_25070 type II toxin-antitoxin system RelE/ParE family toxin K06218 relE; mRNA interferase RelE/StbE D RI060_14350 Txe/YoeB family addiction module toxin K19158 yoeB; toxin YoeB [EC:3.1.-.-] D RI060_14355 type II toxin-antitoxin system prevent-host-death family antitoxin K19159 yefM; antitoxin YefM D RI060_31545 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D RI060_27990 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RI060_29315 rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins D RI060_11780 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RI060_31150 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RI060_12130 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:sjn04090] D RI060_14175 prolyl oligopeptidase family serine peptidase K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] C 01504 Antimicrobial resistance genes [BR:sjn01504] D RI060_11925 GNAT family N-acetyltransferase K17840 aac2-I; aminoglycoside 2'-N-acetyltransferase I [EC:2.3.1.59] D RI060_32570 AAC(3) family N-acetyltransferase K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81] D RI060_23355 aminoglycoside phosphotransferase family protein K04343 strB; streptomycin 6-kinase [EC:2.7.1.72] D RI060_11050 aminoglycoside phosphotransferase family protein K04343 strB; streptomycin 6-kinase [EC:2.7.1.72] D RI060_16090 ABC transporter permease K18233 oleC5; oleandomycin transport system permease protein D RI060_30500 ABC transporter permease K18233 oleC5; oleandomycin transport system permease protein D RI060_02320 TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein K18220 tetM; ribosomal protection tetracycline resistance protein D RI060_07445 ABC-F family ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein D RI060_16095 ATP-binding cassette domain-containing protein K18232 oleC4; oleandomycin transport system ATP-binding protein D RI060_30505 ATP-binding cassette domain-containing protein K18232 oleC4; oleandomycin transport system ATP-binding protein D RI060_28755 erythromycin esterase family protein K06880 ereA_B; erythromycin esterase [EC:3.1.1.-] D RI060_04410 amino acid transporter K19545 lnuA_C_D_E; lincosamide nucleotidyltransferase A/C/D/E D RI060_08845 mgt; macrolide-inactivating glycosyltransferase K21251 mgt; macrolide glycosyltransferase D RI060_03170 MFS transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein D RI060_11880 MFS transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein D RI060_29900 cpt; chloramphenicol phosphotransferase CPT K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-] D RI060_33640 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D RI060_34640 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D RI060_11975 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D RI060_16530 rox; rifampin monooxygenase K21267 iri; rifampicin monooxygenase [EC:1.14.13.211] D RI060_16765 M56 family metallopeptidase K02172 blaR1; bla regulator protein blaR1 D RI060_20180 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RI060_36445 bla; class A beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RI060_00530 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D RI060_30525 endonuclease/exonuclease/phosphatase family protein K18353 vanJ; vancomycin resistance protein VanJ D RI060_35570 M15 family metallopeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D RI060_28900 amino acid adenylation domain-containing protein K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] D RI060_34635 helix-turn-helix domain-containing protein K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:sjn00536] D RI060_27570 beta-N-acetylglucosaminidase domain-containing protein K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:sjn00537] D RI060_25465 dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D RI060_27570 beta-N-acetylglucosaminidase domain-containing protein K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:sjn03100] D RI060_10905 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D RI060_34030 SDR family oxidoreductase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D RI060_28885 L-idonate 5-dehydrogenase K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264] D RI060_34025 L-idonate 5-dehydrogenase K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264] D RI060_38965 S-(hydroxymethyl)mycothiol dehydrogenase K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306] D RI060_02260 S-(hydroxymethyl)mycothiol dehydrogenase K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306] D RI060_01355 histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308] D RI060_15485 decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase K16652 dprE2; decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase [EC:1.1.1.333] D RI060_41285 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D RI060_06950 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D RI060_38395 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D RI060_01585 NAD-dependent epimerase/dehydratase family protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D RI060_01560 NAD(P)-dependent oxidoreductase K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411] D RI060_40745 mgrA; L-glyceraldehyde 3-phosphate reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D RI060_40040 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D RI060_05455 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D RI060_40045 alpha-ketoacid dehydrogenase subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D RI060_05450 alpha-ketoacid dehydrogenase subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D RI060_10350 D-arabinono-1,4-lactone oxidase K05888 K05888; L-gulono-1,4-lactone dehydrogenase [EC:1.1.2.-] D RI060_15480 FAD-binding oxidoreductase K16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3] D RI060_00830 nitroreductase family deazaflavin-dependent oxidoreductase K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-] D RI060_02640 nitroreductase family deazaflavin-dependent oxidoreductase K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-] D RI060_37750 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D RI060_02600 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D RI060_08245 (2Fe-2S)-binding protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D RI060_39885 NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D RI060_16885 geranylgeranyl reductase family protein K21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38] D RI060_40350 acyl-CoA dehydrogenase family protein K22818 fadE26; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase alpha subunit [EC:1.3.99.-] D RI060_20715 acyl-CoA dehydrogenase family protein K22819 fadE27; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase beta subunit [EC:1.3.99.-] D RI060_12270 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D RI060_17575 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D RI060_30475 npdG; NADPH-dependent F420 reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D RI060_36195 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D RI060_00735 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D RI060_15085 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D RI060_22855 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D RI060_23360 zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D RI060_36705 NADPH:quinone oxidoreductase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D RI060_37745 NADP-dependent oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D RI060_06920 zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D RI060_14960 msrA; peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D RI060_09195 msrB; peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D RI060_02650 glutathione S-transferase C-terminal domain-containing protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D RI060_37155 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D RI060_21480 efeB; iron uptake transporter deferrochelatase/peroxidase subunit K15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19] D RI060_26340 bcp; thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D RI060_41265 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D RI060_24920 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D RI060_25860 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D RI060_29630 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D RI060_07060 OsmC family protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D RI060_14485 alkyl hydroperoxide reductase K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D RI060_14480 peroxiredoxin K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D RI060_29770 peroxiredoxin K24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29] D RI060_09105 Dyp-type peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D RI060_20490 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D RI060_29705 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D RI060_03645 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D RI060_27785 TauD/TfdA family dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77] D RI060_41320 TauD/TfdA family dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77] D RI060_30570 globin domain-containing protein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D RI060_04625 lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D RI060_05050 lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D RI060_05580 SidA/IucD/PvdA family monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D RI060_26945 lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252] D RI060_31965 SidA/IucD/PvdA family monooxygenase K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252] D RI060_41515 lytic polysaccharide monooxygenase K22033 K22033; lytic cellulose monooxygenase (C4-dehydrogenating) [EC:1.14.99.56] D RI060_41610 antibiotic biosynthesis monooxygenase K21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57] D RI060_13395 sodN; superoxide dismutase, Ni K00518 sodN; nickel superoxide dismutase [EC:1.15.1.1] D RI060_38050 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D RI060_01185 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D RI060_30705 arsenate reductase family protein K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D RI060_13815 mycoredoxin K18917 mrx1; mycoredoxin [EC:1.20.4.3] D RI060_17510 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D RI060_25295 cyclopropane-fatty-acyl-phospholipid synthase family protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D RI060_25065 trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D RI060_30115 class I SAM-dependent methyltransferase K24288 meT1; MMP 1-O-methyltransferase [EC:2.1.1.365] D RI060_17695 arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D RI060_28250 arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D RI060_22810 mshD; mycothiol synthase K15520 mshD; mycothiol synthase [EC:2.3.1.189] D RI060_35915 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D RI060_38865 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D RI060_20740 ScbA/BarX family gamma-butyrolactone biosynthesis protein K22463 afsA; 2-oxo-3-(phosphooxy)propyl 3-oxoalkanoate synthase [EC:2.3.1.277] D RI060_08575 ScbA/BarX family gamma-butyrolactone biosynthesis protein K22463 afsA; 2-oxo-3-(phosphooxy)propyl 3-oxoalkanoate synthase [EC:2.3.1.277] D RI060_23155 mshA; D-inositol-3-phosphate glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] D RI060_21525 triphosphoribosyl-dephospho-CoA synthase K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D RI060_31795 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D RI060_34590 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D RI060_09095 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D RI060_27710 FGGY-family carbohydrate kinase K00862 eryA; erythritol kinase (D-erythritol 1-phosphate-forming) [EC:2.7.1.215] D RI060_01565 four-carbon acid sugar kinase family protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D RI060_38400 four-carbon acid sugar kinase family protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220] D RI060_11670 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D RI060_30590 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D RI060_17930 disA; DNA integrity scanning diadenylate cyclase DisA K07067 disA; diadenylate cyclase [EC:2.7.7.85] D RI060_03955 fatty acid--CoA ligase family protein K21284 acmA; 3-hydroxy-4-methylanthranilate adenylyltransferase [EC:2.7.7.97] D RI060_40190 rph; rifamycin-inactivating phosphotransferase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6] D RI060_06780 frc; formyl-CoA transferase K07749 frc; formyl-CoA transferase [EC:2.8.3.16] D RI060_31335 alpha/beta fold hydrolase K03928 yvaK; carboxylesterase [EC:3.1.1.1] D RI060_01910 cutinase family protein K08095 CUT1_2_3; cutinase [EC:3.1.1.74] D RI060_38770 phosphotriesterase K23149 E3.1.1.104; 5-phospho-D-xylono-1,4-lactonase [EC:3.1.1.104] D RI060_23500 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D RI060_08580 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D RI060_27495 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D RI060_08000 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D RI060_20840 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D RI060_05705 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D RI060_28190 histidine phosphatase family protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85] D RI060_13980 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D RI060_33300 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D RI060_36065 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D RI060_24975 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D RI060_12725 nucS; endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-] D RI060_15960 endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D RI060_24475 glycoside hydrolase family 11 protein K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D RI060_35730 endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D RI060_37525 endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D RI060_39740 arabinogalactan endo-1,4-beta-galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89] D RI060_29570 arabinan endo-1,5-alpha-L-arabinosidase K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D RI060_09545 alpha-glucuronidase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139] D RI060_06970 cellulose binding domain-containing protein K18578 CEL74A; xyloglucan-specific exo-beta-1,4-glucanase [EC:3.2.1.155] D RI060_11120 1,4-beta-glucanase K18578 CEL74A; xyloglucan-specific exo-beta-1,4-glucanase [EC:3.2.1.155] D RI060_25960 yicI; alpha-xylosidase K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177] D RI060_41970 yicI; alpha-xylosidase K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177] D RI060_04835 glycoside hydrolase family 31 protein K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177] D RI060_11095 glycoside hydrolase family 31 protein K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177] D RI060_30085 prenyltransferase K27194 mmpH; MMP endo-(1,4)-3-O-methyl-alpha-D-mannosidase [EC:3.2.1.221] D RI060_19945 serine hydrolase domain-containing protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D RI060_23265 serine hydrolase domain-containing protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D RI060_24885 serine hydrolase domain-containing protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D RI060_27640 serine hydrolase domain-containing protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D RI060_29535 serine hydrolase domain-containing protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D RI060_40655 serine hydrolase domain-containing protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D RI060_14820 D-aminoacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D RI060_13610 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RI060_16880 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RI060_36640 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RI060_03670 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D RI060_40505 penicillin acylase family protein K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D RI060_14165 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103] D RI060_04160 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D RI060_04795 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D RI060_14905 mca; mycothiol conjugate amidase Mca K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115] D RI060_19785 protein-arginine deiminase domain-containing protein K01481 E3.5.3.15; protein-arginine deiminase [EC:3.5.3.15] D RI060_08010 8-oxoguanine deaminase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D RI060_23045 AAA family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RI060_25720 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RI060_31485 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RI060_37760 amidohydrolase family protein K22213 PATG; 6-methylsalicylate decarboxylase [EC:4.1.1.52] D RI060_40390 amidohydrolase family protein K22213 PATG; 6-methylsalicylate decarboxylase [EC:4.1.1.52] D RI060_01570 aldolase K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D RI060_21770 lipid-transfer protein K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-] D RI060_16045 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D RI060_21760 bifunctional MaoC family dehydratase N-terminal/OB-fold nucleic acid binding domain-containing protein K25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-] D RI060_21765 MaoC family dehydratase K25622 chsH1; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase beta subunit [EC:4.2.1.-] D RI060_11845 polysaccharide lyase 8 family protein K01727 hysA; hyaluronate lyase [EC:4.2.2.1] D RI060_08470 rhamnogalacturonan lyase B N-terminal domain-containing protein K18195 RGL4; rhamnogalacturonan endolyase [EC:4.2.2.23] D RI060_13170 hypothetical protein K18197 yesW; rhamnogalacturonan endolyase [EC:4.2.2.23] D RI060_06975 rhamnogalacturonan lyase K18197 yesW; rhamnogalacturonan endolyase [EC:4.2.2.23] D RI060_02960 pyridoxal-phosphate dependent enzyme K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D RI060_02865 L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D RI060_04230 L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D RI060_34260 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D RI060_34265 FKBP-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D RI060_01580 hydroxypyruvate isomerase family protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D RI060_39930 methylmalonyl-CoA mutase family protein K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13] D RI060_12590 methylmalonyl-CoA mutase family protein K25820 icmA; isobutyryl-CoA mutase large subunit [EC:5.4.99.13] D RI060_15715 cobalamin B12-binding domain-containing protein K25821 icmB; isobutyryl-CoA mutase small subunit [EC:5.4.99.13] D RI060_40540 acyl-CoA synthetase K18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42] D RI060_26680 long-chain-fatty-acid--CoA ligase K25776 casI; steroid-22-oyl-CoA synthetase [EC:6.2.1.-] D RI060_34135 mshC; cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13] D RI060_16145 pgsB; poly-gamma-glutamate synthase PgsB K01932 capB; gamma-polyglutamate synthase [EC:6.3.2.-] D RI060_23880 carboxyl transferase domain-containing protein K01970 accD2; acyl-CoA carboxylase subunit beta [EC:6.4.1.-] D RI060_29340 carboxyl transferase domain-containing protein K04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-] D RI060_03930 class I adenylate-forming enzyme family protein K27292 avaA6; 3-aminoavenalumate diazotase [EC:6.7.1.2] D RI060_23675 HAD-IC family P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-] D RI060_41495 cation-translocating P-type ATPase K12955 ctpI; cation-transporting P-type ATPase I [EC:7.2.2.-] D RI060_39660 heavy metal translocating P-type ATPase K21887 ctpJ; cation-transporting P-type ATPase J [EC:7.2.2.-] C 99981 Carbohydrate metabolism D RI060_01985 sugar phosphate isomerase/epimerase K06605 iolH; myo-inositol catabolism protein IolH D RI060_17825 acetoin utilization protein AcuC K04768 acuC; acetoin utilization protein AcuC D RI060_15970 glycoside hydrolase family 3 N-terminal domain-containing protein K17641 bxlA; beta-xylosidase D RI060_02905 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D RI060_02910 LutB/LldF family L-lactate oxidation iron-sulfur protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D RI060_02915 LUD domain-containing protein K00782 lldG; L-lactate dehydrogenase complex protein LldG D RI060_08485 expansin EXLX1 family cellulose-binding protein K20628 exlX; expansin C 99982 Energy metabolism D RI060_39085 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D RI060_06910 fdhD; formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D RI060_04900 2Fe-2S iron-sulfur cluster-binding protein K04755 fdx; ferredoxin, 2Fe-2S D RI060_21715 ferredoxin K05337 fer; ferredoxin D RI060_34215 ferredoxin K05337 fer; ferredoxin D RI060_37090 ferredoxin K05337 fer; ferredoxin D RI060_02625 ferredoxin K05337 fer; ferredoxin D RI060_04765 ferredoxin K05337 fer; ferredoxin D RI060_30065 ferredoxin K05337 fer; ferredoxin D RI060_32605 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins D RI060_38170 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit D RI060_01665 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit D RI060_04040 dodecin family protein K09165 K09165; dodecin C 99983 Lipid metabolism D RI060_38010 acyl-CoA dehydrogenase family protein K09456 aidB; putative acyl-CoA dehydrogenase D RI060_08700 acyl-CoA dehydrogenase family protein K09456 aidB; putative acyl-CoA dehydrogenase D RI060_28235 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D RI060_29645 EI24 domain-containing protein K06203 cysZ; CysZ protein D RI060_31555 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D RI060_25260 transglycosylase family protein K21687 rpfA; resuscitation-promoting factor RpfA D RI060_25265 transglycosylase family protein K21687 rpfA; resuscitation-promoting factor RpfA D RI060_33585 transglycosylase family protein K21687 rpfA; resuscitation-promoting factor RpfA D RI060_24980 ubiquitin-like domain-containing protein K21688 rpfB; resuscitation-promoting factor RpfB C 99987 Cofactor metabolism D RI060_17545 AbgT family transporter K12942 abgT; aminobenzoyl-glutamate transport protein D RI060_37045 AbgT family transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism D RI060_40405 zinc-binding dehydrogenase K18536 thnD; putative oxidoreductase D RI060_03215 aromatic ring-hydroxylating dioxygenase subunit alpha K22895 cruH; renierapurpurin 18,18'-hydroxylase D RI060_02430 SapB/AmfS family lanthipeptide K24913 ramS; lanthionine-containing peptide SapB D RI060_02425 lanKC; class III lanthionine synthetase LanKC K24914 ramC; probable SapB synthase C 99999 Others D RI060_29870 DoxX family protein K15977 K15977; putative oxidoreductase D RI060_30340 DoxX family protein K15977 K15977; putative oxidoreductase B B 09192 Unclassified: genetic information processing C 99973 Transcription D RI060_16000 cold-shock protein K03704 cspA; cold shock protein D RI060_17265 cold-shock protein K03704 cspA; cold shock protein D RI060_19965 cold-shock protein K03704 cspA; cold shock protein D RI060_23485 cold-shock protein K03704 cspA; cold shock protein D RI060_23635 cold-shock protein K03704 cspA; cold shock protein D RI060_07785 cold-shock protein K03704 cspA; cold shock protein D RI060_05855 Tex family protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D RI060_26260 clpS; ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D RI060_27945 tig; trigger factor K03545 tig; trigger factor D RI060_36535 urease accessory UreF family protein K03188 ureF; urease accessory protein D RI060_36540 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D RI060_36545 urease accessory protein UreD K03190 ureD; urease accessory protein D RI060_25950 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D RI060_39435 HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC D RI060_39430 hypD; hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D RI060_39425 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D RI060_39440 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF D RI060_11460 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein D RI060_19730 DsbA family protein K07396 K07396; putative protein-disulfide isomerase D RI060_17435 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein D RI060_07920 SelT/SelW/SelH family protein K07401 K07401; selenoprotein W-related protein D RI060_37235 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor D RI060_37895 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor D RI060_03710 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor D RI060_02325 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor D RI060_08230 XdhC family protein K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D RI060_42380 AAA family ATPase K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D RI060_11465 YraN family protein K07460 yraN; putative endonuclease D RI060_34195 PD-(D/E)XK nuclease family protein K07465 K07465; putative RecB family exonuclease D RI060_30815 DNA-processing protein DprA K04096 smf; DNA processing protein D RI060_11455 dprA; DNA-processing protein DprA K04096 smf; DNA processing protein D RI060_35015 replication-associated recombination protein A K07478 ycaJ; putative ATPase D RI060_06725 transposase K07487 K07487; transposase D RI060_20285 RNA-guided endonuclease TnpB family protein K07496 K07496; putative transposase D RI060_20700 transposase K07496 K07496; putative transposase D RI060_23510 tnpB; IS607 family element RNA-guided endonuclease TnpB K07496 K07496; putative transposase D RI060_09390 transposase K07496 K07496; putative transposase C 99979 Viral proteins C 99998 Others D RI060_31080 PspA/IM30 family protein K03969 pspA; phage shock protein A D RI060_19010 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D RI060_26270 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D RI060_35215 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RI060_08505 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RI060_09495 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RI060_10195 APC family permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D RI060_31100 efflux RND transporter permease subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D RI060_33850 CitMHS family transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D RI060_01060 citrate:proton symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D RI060_25435 oligopeptide:H+ symporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D RI060_13415 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D RI060_22730 anion permease K03306 TC.PIT; inorganic phosphate transporter, PiT family D RI060_33075 anion permease K03306 TC.PIT; inorganic phosphate transporter, PiT family D RI060_13570 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family D RI060_25020 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family D RI060_27010 sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D RI060_33170 sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D RI060_32135 NCS1 family nucleobase:cation symporter-1 K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D RI060_07615 NCS1 family nucleobase:cation symporter-1 K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D RI060_06535 ATP-binding protein K07321 cooC; CO dehydrogenase maturation factor D RI060_21135 R3H domain-containing nucleic acid-binding protein K06346 jag; spoIIIJ-associated protein D RI060_13110 sporulation protein K06377 spo0M; sporulation-control protein D RI060_33380 sporulation protein K06377 spo0M; sporulation-control protein D RI060_38540 sporulation protein K06377 spo0M; sporulation-control protein D RI060_41130 STAS domain-containing protein K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) C 99993 Cell motility C 99995 Signaling proteins D RI060_38840 TerD family protein K05792 terA; tellurite resistance protein TerA D RI060_23395 TerD family protein K05795 terD; tellurium resistance protein TerD D RI060_29775 TerD family protein K05795 terD; tellurium resistance protein TerD D RI060_29780 TerD family protein K05795 terD; tellurium resistance protein TerD D RI060_38520 TerD family protein K05795 terD; tellurium resistance protein TerD D RI060_32295 TerD family protein K05791 terZ; tellurium resistance protein TerZ D RI060_33175 carbon starvation CstA family protein K06200 cstA; carbon starvation protein D RI060_14210 typA; translational GTPase TypA K06207 typA; GTP-binding protein D RI060_28400 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D RI060_14500 PhoH family protein K07175 phoH2; PhoH-like ATPase D RI060_16540 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D RI060_16140 poly-gamma-glutamate biosynthesis protein PgsC/CapC K22116 capC; gamma-polyglutamate biosynthesis protein CapC D RI060_07195 gas vesicle structural protein GvpA K23262 gvpA; gas vesicle structural protein D RI060_08805 gvpJ; gas vesicle protein GvpJ K23262 gvpA; gas vesicle structural protein C 99994 Others D RI060_23280 phoU; phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein D RI060_31370 (2Fe-2S)-binding protein K02192 bfd; bacterioferritin-associated ferredoxin D RI060_20190 TerB family tellurite resistance protein K05793 terB; tellurite resistance protein TerB D RI060_32305 TerC/Alx family metal homeostasis membrane protein K05794 terC; tellurite resistance protein TerC D RI060_03770 TerC family protein K05794 terC; tellurite resistance protein TerC D RI060_23570 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein D RI060_24105 NAD(P)/FAD-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport B B 09194 Poorly characterized C 99996 General function prediction only D RI060_35910 Gfo/Idh/MocA family oxidoreductase K03810 mviM; virulence factor D RI060_02755 PHP domain-containing protein K04477 ycdX; putative hydrolase D RI060_18715 DEAD/DEAH box helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein D RI060_27485 globin K06886 glbN; hemoglobin D RI060_19960 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_20120 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_24880 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_27245 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_28515 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_35185 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_41530 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_08830 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_12045 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D RI060_30790 patatin-like phospholipase family protein K07001 K07001; NTE family protein D RI060_00905 HAD-IA family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D RI060_03545 HAD family phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D RI060_11775 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D RI060_32580 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D RI060_32585 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D RI060_15460 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D RI060_19655 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D RI060_19770 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D RI060_21690 YhjD/YihY/BrkB family envelope integrity protein K07058 K07058; membrane protein D RI060_08695 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D RI060_03775 phosphoribosyltransferase family protein K07100 K07100; putative phosphoribosyl transferase D RI060_35390 fxsA; FxsA family membrane protein K07113 fxsA; UPF0716 protein FxsA D RI060_01930 VOC family protein K04750 phnB; PhnB protein D RI060_08170 VOC family protein K04750 phnB; PhnB protein D RI060_36620 cytochrome c oxidase assembly protein K02351 K02351; putative membrane protein D RI060_00425 cytochrome c oxidase assembly protein K02351 K02351; putative membrane protein D RI060_18195 VTT domain-containing protein K03975 dedA; membrane-associated protein D RI060_31450 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein D RI060_33990 DUF202 domain-containing protein K00389 yidH; putative membrane protein D RI060_21335 phage holin family protein K08972 K08972; putative membrane protein D RI060_18110 PH domain-containing protein K08981 K08981; putative membrane protein D RI060_38785 SHOCT domain-containing protein K08982 K08982; putative membrane protein D RI060_20215 DUF1304 domain-containing protein K08987 K08987; putative membrane protein D RI060_34050 YchJ family metal-binding protein K09858 K09858; SEC-C motif domain protein C 99997 Function unknown D RI060_35430 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D RI060_41550 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D RI060_05195 FxsB family cyclophane-forming radical SAM/SPASM peptide maturase K06871 K06871; uncharacterized protein D RI060_14890 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein D RI060_33090 alpha/beta fold hydrolase K06889 K06889; uncharacterized protein D RI060_19720 nuclear transport factor 2 family protein K06893 K06893; uncharacterized protein D RI060_20045 nuclear transport factor 2 family protein K06893 K06893; uncharacterized protein D RI060_23185 nuclear transport factor 2 family protein K06893 K06893; uncharacterized protein D RI060_28275 nuclear transport factor 2 family protein K06893 K06893; uncharacterized protein D RI060_37815 nuclear transport factor 2 family protein K06893 K06893; uncharacterized protein D RI060_41880 nuclear transport factor 2 family protein K06893 K06893; uncharacterized protein D RI060_42695 nuclear transport factor 2 family protein K06893 K06893; uncharacterized protein D RI060_00150 hypothetical protein K06893 K06893; uncharacterized protein D RI060_37645 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W D RI060_11320 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W D RI060_37575 phage tail sheath subtilisin-like domain-containing protein K06907 FI; Bacteriophage tail sheath protein D RI060_11280 phage tail sheath subtilisin-like domain-containing protein K06907 FI; Bacteriophage tail sheath protein D RI060_20255 ATP-binding protein K06921 K06921; uncharacterized protein D RI060_36040 CoA-binding protein K06929 K06929; uncharacterized protein D RI060_13260 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_34325 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_35540 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_09050 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_11810 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_11830 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_02685 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_05545 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_36825 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_41380 ATP/GTP-binding protein K06945 K06945; uncharacterized protein D RI060_11515 RNA-binding protein K06960 K06960; uncharacterized protein D RI060_04360 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein D RI060_11065 GNAT family N-acetyltransferase K06976 K06976; uncharacterized protein D RI060_24535 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein D RI060_37115 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein D RI060_39485 CocE/NonD family hydrolase K06978 K06978; uncharacterized protein D RI060_39635 M14 family metallopeptidase K06987 K06987; uncharacterized protein D RI060_20055 VOC family protein K06996 K06996; uncharacterized protein D RI060_24175 VOC family protein K06996 K06996; uncharacterized protein D RI060_40860 VOC family protein K06996 K06996; uncharacterized protein D RI060_03055 VOC family protein K06996 K06996; uncharacterized protein D RI060_06005 VOC family protein K06996 K06996; uncharacterized protein D RI060_10365 VOC family protein K06996 K06996; uncharacterized protein D RI060_32665 endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein D RI060_35800 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein D RI060_00965 pyridoxamine 5'-phosphate oxidase family protein K07006 K07006; uncharacterized protein D RI060_02185 PPOX class F420-dependent oxidoreductase K07006 K07006; uncharacterized protein D RI060_07930 pyridoxamine 5'-phosphate oxidase family protein K07006 K07006; uncharacterized protein D RI060_13640 hydrolase K07020 K07020; uncharacterized protein D RI060_11365 VOC family protein K07032 K07032; uncharacterized protein D RI060_26905 GPR1/FUN34/YaaH family transporter K07034 K07034; uncharacterized protein D RI060_09675 metal-dependent hydrolase K07044 K07044; uncharacterized protein D RI060_20110 amidohydrolase family protein K07045 K07045; uncharacterized protein D RI060_32550 amidohydrolase family protein K07045 K07045; uncharacterized protein D RI060_39115 amidohydrolase family protein K07045 K07045; uncharacterized protein D RI060_05490 amidohydrolase family protein K07045 K07045; uncharacterized protein D RI060_06355 amidohydrolase family protein K07045 K07045; uncharacterized protein D RI060_06810 TatD family hydrolase K07051 K07051; uncharacterized protein D RI060_19645 PIN domain-containing protein K07065 K07065; uncharacterized protein D RI060_24115 OB-fold domain-containing protein K07068 K07068; uncharacterized protein D RI060_24200 OB-fold domain-containing protein K07068 K07068; uncharacterized protein D RI060_40075 zinc ribbon domain-containing protein K07068 K07068; uncharacterized protein D RI060_40550 OB-fold domain-containing protein K07068 K07068; uncharacterized protein D RI060_01680 hypothetical protein K07068 K07068; uncharacterized protein D RI060_02175 zinc ribbon domain-containing protein K07068 K07068; uncharacterized protein D RI060_35565 zinc ribbon domain-containing protein K07068 K07068; uncharacterized protein D RI060_30945 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein D RI060_41615 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein D RI060_33540 nucleotidyltransferase domain-containing protein K07074 K07074; uncharacterized protein D RI060_41010 FAD-binding dehydrogenase K07077 K07077; uncharacterized protein D RI060_37410 TAXI family TRAP transporter solute-binding subunit K07080 K07080; uncharacterized protein D RI060_10720 TAXI family TRAP transporter solute-binding subunit K07080 K07080; uncharacterized protein D RI060_18925 permease K07089 K07089; uncharacterized protein D RI060_20305 permease K07089 K07089; uncharacterized protein D RI060_28825 TSUP family transporter K07090 K07090; uncharacterized protein D RI060_41525 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RI060_01700 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RI060_05405 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D RI060_20410 PhoX family protein K07093 K07093; uncharacterized protein D RI060_09240 PhoX family protein K07093 K07093; uncharacterized protein D RI060_32675 DUF839 domain-containing protein K07093 K07093; uncharacterized protein D RI060_02375 metallophosphoesterase K07095 K07095; uncharacterized protein D RI060_15445 metallophosphoesterase K07098 K07098; uncharacterized protein D RI060_18870 metallophosphoesterase K07098 K07098; uncharacterized protein D RI060_37510 metallophosphoesterase K07098 K07098; uncharacterized protein D RI060_19390 phosphoribosyltransferase K07101 K07101; uncharacterized protein D RI060_01940 NAD(P)H-binding protein K07118 K07118; uncharacterized protein D RI060_15910 SDR family oxidoreductase K07124 K07124; uncharacterized protein D RI060_37840 SDR family NAD(P)-dependent oxidoreductase K07124 K07124; uncharacterized protein D RI060_01215 roadblock/LC7 domain-containing protein K07131 K07131; uncharacterized protein D RI060_09040 roadblock/LC7 domain-containing protein K07131 K07131; uncharacterized protein D RI060_11800 roadblock/LC7 domain-containing protein K07131 K07131; uncharacterized protein D RI060_11820 roadblock/LC7 domain-containing protein K07131 K07131; uncharacterized protein D RI060_38830 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein D RI060_08495 MOSC N-terminal beta barrel domain-containing protein K07140 K07140; MOSC domain-containing protein D RI060_19280 DUF418 domain-containing protein K07148 K07148; uncharacterized protein D RI060_31675 LON peptidase substrate-binding domain-containing protein K07157 K07157; uncharacterized protein D RI060_02945 VWA domain-containing protein K07161 K07161; uncharacterized protein D RI060_30170 C4-type zinc ribbon domain-containing protein K07164 K07164; uncharacterized protein D RI060_21125 yidD; membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D RI060_35655 bifunctional nuclease family protein K08999 K08999; uncharacterized protein D RI060_14560 DUF192 domain-containing protein K09005 K09005; uncharacterized protein D RI060_25280 DUF501 domain-containing protein K09009 K09009; uncharacterized protein D RI060_18865 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein D RI060_13720 UPF0182 family protein K09118 K09118; uncharacterized protein D RI060_14865 Mut7-C RNAse domain-containing protein K09122 K09122; uncharacterized protein D RI060_21390 cyclophilin-like fold protein K09143 K09143; uncharacterized protein D RI060_18105 PH domain-containing protein K09167 K09167; uncharacterized protein D RI060_30785 DUF2075 domain-containing protein K09384 K09384; uncharacterized protein D RI060_04885 DUF2075 domain-containing protein K09384 K09384; uncharacterized protein D RI060_32960 DUF1349 domain-containing protein K09702 K09702; uncharacterized protein D RI060_22145 cupin domain-containing protein K09705 K09705; uncharacterized protein D RI060_05390 DUF309 domain-containing protein K09763 K09763; uncharacterized protein D RI060_11015 DUF503 domain-containing protein K09764 K09764; uncharacterized protein D RI060_29525 YciI family protein K09780 K09780; uncharacterized protein D RI060_25655 Trm112 family protein K09791 K09791; uncharacterized protein D RI060_29385 Trm112 family protein K09791 K09791; uncharacterized protein D RI060_08305 DUF456 domain-containing protein K09793 K09793; uncharacterized protein D RI060_29785 DUF475 domain-containing protein K09799 K09799; uncharacterized protein D RI060_31975 SIMPL domain-containing protein K09807 K09807; uncharacterized protein D RI060_30185 yaaA; peroxide stress protein YaaA K09861 K09861; uncharacterized protein D RI060_25775 crosslink repair DNA glycosylase YcaQ family protein K09927 K09927; uncharacterized protein D RI060_09300 DUF692 domain-containing protein K09930 K09930; uncharacterized protein D RI060_37370 DUF2064 domain-containing protein K09931 K09931; uncharacterized protein D RI060_15520 antibiotic biosynthesis monooxygenase K09932 K09932; uncharacterized protein D RI060_02130 antibiotic biosynthesis monooxygenase K09932 K09932; uncharacterized protein D RI060_37715 glycoside hydrolase family 127 protein K09955 K09955; uncharacterized protein D RI060_41710 glycoside hydrolase family 127 protein K09955 K09955; uncharacterized protein D RI060_41720 glycoside hydrolase family 127 protein K09955 K09955; uncharacterized protein D RI060_02615 nuclear transport factor 2 family protein K09958 K09958; uncharacterized protein D RI060_37065 DUF779 domain-containing protein K09959 K09959; uncharacterized protein D RI060_34740 zf-TFIIB domain-containing protein K09981 K09981; uncharacterized protein D RI060_38375 ThuA domain-containing protein K09992 K09992; uncharacterized protein D RI060_39965 ThuA domain-containing protein K09992 K09992; uncharacterized protein D RI060_22725 DUF47 family protein K07220 K07220; uncharacterized protein D RI060_11025 YlxR family protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 19, 2024