+E Transcription factors KO #

  Transcription Factors - Spirosoma montaniterrae

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D AWR27_10460 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D AWR27_21850 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D AWR27_08500 hypothetical protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D AWR27_04325 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D AWR27_18960 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D AWR27_07080 hypothetical protein K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D AWR27_17190 AraC family transcriptional regulator K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D AWR27_04960 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D AWR27_10005 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D AWR27_13070 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D AWR27_11620 transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D AWR27_11110 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family D AWR27_01955 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AWR27_15545 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AWR27_11240 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AWR27_23345 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AWR27_15550 hypothetical protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG C GntR family D AWR27_23445 hypothetical protein K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator D AWR27_10280 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D AWR27_01040 TetR family transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor C Lrp/AsnC family D AWR27_11445 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D AWR27_09010 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D AWR27_23840 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AWR27_08205 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D AWR27_03730 helix-turn-helix transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein C MarR family D AWR27_00205 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D AWR27_19215 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D AWR27_19555 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D AWR27_06130 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D AWR27_20060 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family D AWR27_07560 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D AWR27_16070 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D AWR27_09435 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AWR27_15505 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AWR27_05165 hypothetical protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D AWR27_16610 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AWR27_13975 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D AWR27_04795 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D AWR27_05430 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family D AWR27_09055 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D AWR27_08845 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D AWR27_18070 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D AWR27_00275 iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D AWR27_21235 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D AWR27_16310 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D AWR27_19675 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D AWR27_02220 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D AWR27_06320 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D AWR27_06395 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D AWR27_22175 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D AWR27_07105 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D AWR27_19335 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D AWR27_18295 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D AWR27_11555 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D AWR27_12615 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AWR27_16220 ROK family transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D AWR27_06655 hypothetical protein K03973 pspC; phage shock protein C D AWR27_14525 PyrR protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D AWR27_03660 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D AWR27_01375 hypothetical protein K07735 algH; putative transcriptional regulator D AWR27_21825 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0