+F Repair protein KO #

  DNA Repair and Recombination Proteins - Synechocystis sp. PCC 6803 GT-S

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SYNGTS_1214 phr; deoxyribopyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SYNGTS_1186 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SYNGTS_0082 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SYNGTS_0710 slr1134; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SYNGTS_2505 slr0920; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SYNGTS_1214 phr; deoxyribopyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SYNGTS_1583 slr1343; hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E SYNGTS_2271 slr0231; hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SYNGTS_1809 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SYNGTS_1186 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SYNGTS_2023 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SYNGTS_0984 recJ; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SYNGTS_0010 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E SYNGTS_0878 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SYNGTS_2346 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SYNGTS_1046 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SYNGTS_0931 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SYNGTS_0796 sll1121; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SYNGTS_0010 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SYNGTS_0791 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SYNGTS_1691 rpoC1; RNA polymerase gamma-subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SYNGTS_0790 rpoC2; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SYNGTS_0751 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SYNGTS_1872 ssl2982; hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SYNGTS_2432 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SYNGTS_1245 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E SYNGTS_1094 mutS; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SYNGTS_0806 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E SYNGTS_0667 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SYNGTS_3164 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SYNGTS_0295 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SYNGTS_2526 sll0544; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SYNGTS_1915 dnaX; DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SYNGTS_0973 dnaX; DNA polymerase III subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SYNGTS_0010 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SYNGTS_0931 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SYNGTS_0796 sll1121; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SYNGTS_2886 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SYNGTS_3047 sll0729; modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SYNGTS_1152 mbpA; adenine-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SYNGTS_3151 recA; recombinase A K03553 recA; recombination protein RecA E SYNGTS_1020 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SYNGTS_2387 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SYNGTS_2898 ruvC; Holliday juction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SYNGTS_1923 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SYNGTS_0456 slr1048; hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E SYNGTS_2216 sll0021; hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SYNGTS_3151 recA; recombinase A K03553 recA; recombination protein RecA E SYNGTS_1917 sms; sms protein K04485 radA; DNA repair protein RadA/Sms E SYNGTS_0998 recF; RecF protein K03629 recF; DNA replication and repair protein RecF E SYNGTS_2242 recG; DNA recombinase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SYNGTS_0984 recJ; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SYNGTS_2107 slr0181; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SYNGTS_2935 recR; recombination protein K06187 recR; recombination protein RecR E SYNGTS_1896 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SYNGTS_1020 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SYNGTS_2387 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SYNGTS_2898 ruvC; Holliday juction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E SYNGTS_0456 slr1048; hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E SYNGTS_2216 sll0021; hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SYNGTS_0527 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SYNGTS_2417 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SYNGTS_1144 gyrB; DNA gyrase B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SYNGTS_1288 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SYNGTS_0884 hupA; DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SYNGTS_0984 recJ; single-strand-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SYNGTS_2107 slr0181; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SYNGTS_2935 recR; recombination protein K06187 recR; recombination protein RecR F SYNGTS_0010 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SYNGTS_0887 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SYNGTS_0878 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SYNGTS_2346 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D SYNGTS_3151 recA; recombinase A K03553 recA; recombination protein RecA D SYNGTS_1194 lexA; SOS function regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D SYNGTS_1896 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SYNGTS_2886 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D SYNGTS_0082 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SYNGTS_0710 slr1134; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SYNGTS_2505 slr0920; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SYNGTS_1759 nrdA; ribonucleotide reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SYNGTS_3146 slr0591; hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024