+F Repair protein KO
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DNA Repair and Recombination Proteins - Thermosynechococcus sp. NK55
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D NK55_06950 phrA; FAD-dependent deoxyribopyrimidine photolyase PhrA K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D NK55_11750 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E NK55_07385 N-methylpurine-DNA glycosirase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E NK55_01780 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E NK55_04840 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D NK55_02700 Nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NK55_08320 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D NK55_06950 phrA; FAD-dependent deoxyribopyrimidine photolyase PhrA K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D NK55_11750 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E NK55_06470 uracil-DNA glycosylase family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E NK55_07385 N-methylpurine-DNA glycosirase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E NK55_01780 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E NK55_04465 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E NK55_04840 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E NK55_05580 xth; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E NK55_04025 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E NK55_10860 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E NK55_01110 uvrA; excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A
E NK55_08170 uvrB; excinuclease ABC subunit B UvrB K03702 uvrB; excinuclease ABC subunit B
E NK55_05410 uvrC; excinuclease ABC subunit C UvrC K03703 uvrC; excinuclease ABC subunit C
E NK55_00500 UvrD/REP helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E NK55_09110 pcrA; ATP-dependent DNA helicase II PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E NK55_10860 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F NK55_01485 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F NK55_01490 rpoC1; DNA-directed RNA polymerase gamma subunit RpoC1 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F NK55_01495 rpoC2; DNA-directed RNA polymerase delta subunit RpoC2 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F NK55_09740 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F NK55_07880 rpoZ; DNA-directed RNA polymerase omega subunit RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F NK55_11345 mfd; transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
E NK55_09180 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E NK55_08280 dnaEC; DNA polymerase III alpha subunit DnaEC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E NK55_08345 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E NK55_08860 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E NK55_04510 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E NK55_11600 holB; DNA polymerase III delta prime subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E NK55_00865 dnaX; DNA-directed DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E NK55_10860 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E NK55_00500 UvrD/REP helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E NK55_09110 pcrA; ATP-dependent DNA helicase II PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E NK55_04095 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
E NK55_04530 type II restriction-modification system GATC-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E NK55_08460 recA; recombinase A RecA K03553 recA; recombination protein RecA
E NK55_11670 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E NK55_07860 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E NK55_02975 ruvC; Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E NK55_06895 priA; primosome assembly protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E NK55_07520 sbcC-1; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E NK55_06585 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E NK55_09510 putative DNA repair protein RAD32 K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E NK55_08460 recA; recombinase A RecA K03553 recA; recombination protein RecA
E NK55_01645 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E NK55_00775 recF; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E NK55_10165 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E NK55_04025 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E NK55_07755 recO; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E NK55_07655 recR; recombination protein RecR K06187 recR; recombination protein RecR
E NK55_06165 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E NK55_11670 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E NK55_07860 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E NK55_02975 ruvC; Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E NK55_03965 cas1_cas4; type I CRISPR immunity system MYXAN subtype bifunctional metal-dependent deoxyribonuclease Cas1 / recB-like nuclease Cas4 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E NK55_07520 sbcC-1; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E NK55_06585 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E NK55_09510 putative DNA repair protein RAD32 K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F NK55_02310 gyrA-1; DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F NK55_04635 gyrA-2; DNA gyrase alpha subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F NK55_06075 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F NK55_07930 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F NK55_04025 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F NK55_07755 recO; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F NK55_07655 recR; recombination protein RecR K06187 recR; recombination protein RecR
F NK55_10860 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F NK55_10505 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F NK55_01110 uvrA; excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A
F NK55_08170 uvrB; excinuclease ABC subunit B UvrB K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D NK55_08460 recA; recombinase A RecA K03553 recA; recombination protein RecA
D NK55_06165 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D NK55_04095 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D NK55_04020 Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D NK55_02700 Nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NK55_08320 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024