+F Repair protein KO #

  DNA Repair and Recombination Proteins - Thermosynechococcus sp. NK55

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D NK55_06950 phrA; FAD-dependent deoxyribopyrimidine photolyase PhrA K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D NK55_11750 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NK55_07385 N-methylpurine-DNA glycosirase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E NK55_01780 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NK55_04840 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D NK55_02700 Nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NK55_08320 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D NK55_06950 phrA; FAD-dependent deoxyribopyrimidine photolyase PhrA K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D NK55_11750 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E NK55_06470 uracil-DNA glycosylase family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E NK55_07385 N-methylpurine-DNA glycosirase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E NK55_01780 mutY; A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E NK55_04465 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E NK55_04840 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E NK55_05580 xth; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E NK55_04025 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E NK55_10860 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E NK55_01110 uvrA; excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A E NK55_08170 uvrB; excinuclease ABC subunit B UvrB K03702 uvrB; excinuclease ABC subunit B E NK55_05410 uvrC; excinuclease ABC subunit C UvrC K03703 uvrC; excinuclease ABC subunit C E NK55_00500 UvrD/REP helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NK55_09110 pcrA; ATP-dependent DNA helicase II PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NK55_10860 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F NK55_01485 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F NK55_01490 rpoC1; DNA-directed RNA polymerase gamma subunit RpoC1 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F NK55_01495 rpoC2; DNA-directed RNA polymerase delta subunit RpoC2 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F NK55_09740 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F NK55_07880 rpoZ; DNA-directed RNA polymerase omega subunit RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F NK55_11345 mfd; transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker E NK55_09180 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E NK55_08280 dnaEC; DNA polymerase III alpha subunit DnaEC K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E NK55_08345 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E NK55_08860 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E NK55_04510 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E NK55_11600 holB; DNA polymerase III delta prime subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E NK55_00865 dnaX; DNA-directed DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E NK55_10860 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E NK55_00500 UvrD/REP helicase domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NK55_09110 pcrA; ATP-dependent DNA helicase II PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E NK55_04095 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein E NK55_04530 type II restriction-modification system GATC-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E NK55_08460 recA; recombinase A RecA K03553 recA; recombination protein RecA E NK55_11670 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E NK55_07860 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NK55_02975 ruvC; Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E NK55_06895 priA; primosome assembly protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E NK55_07520 sbcC-1; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E NK55_06585 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E NK55_09510 putative DNA repair protein RAD32 K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E NK55_08460 recA; recombinase A RecA K03553 recA; recombination protein RecA E NK55_01645 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E NK55_00775 recF; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E NK55_10165 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E NK55_04025 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E NK55_07755 recO; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E NK55_07655 recR; recombination protein RecR K06187 recR; recombination protein RecR E NK55_06165 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E NK55_11670 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E NK55_07860 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E NK55_02975 ruvC; Holliday junction resolvase RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E NK55_03965 cas1_cas4; type I CRISPR immunity system MYXAN subtype bifunctional metal-dependent deoxyribonuclease Cas1 / recB-like nuclease Cas4 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E NK55_07520 sbcC-1; nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E NK55_06585 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E NK55_09510 putative DNA repair protein RAD32 K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F NK55_02310 gyrA-1; DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NK55_04635 gyrA-2; DNA gyrase alpha subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F NK55_06075 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F NK55_07930 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F NK55_04025 recJ-2; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F NK55_07755 recO; DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F NK55_07655 recR; recombination protein RecR K06187 recR; recombination protein RecR F NK55_10860 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F NK55_10505 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F NK55_01110 uvrA; excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A F NK55_08170 uvrB; excinuclease ABC subunit B UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D NK55_08460 recA; recombinase A RecA K03553 recA; recombination protein RecA D NK55_06165 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D NK55_04095 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D NK55_04020 Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D NK55_02700 Nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D NK55_08320 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024