+F Repair protein KO
#
DNA Repair and Recombination Proteins - Trichinella spiralis
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Tsp_00487 alpha-ketoglutarate-dependent dioxygenase AlkB protein K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D Tsp_04158 putative Sec63 domain protein K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D Tsp_07871 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Tsp_08576 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Tsp_05734 G/T mismatch-specific thymine DNA glycosylase K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E Tsp_09248 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Tsp_09872 putative helix-hairpin-helix motif protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Tsp_03775 N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Tsp_01310 DNA-(apurinic or apyrimidinic site) lyase K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E Tsp_03481 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F Tsp_06599 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F Tsp_13254 DNA polymerase subunit delta-2 K02328 POLD2; DNA polymerase delta subunit 2
F Tsp_02376 DNA polymerase subunit delta-2 K02328 POLD2; DNA polymerase delta subunit 2
E DNA polymerase epsilon complex
F Tsp_07270 DNA polymerase family B, exonuclease domain protein K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F Tsp_07893 DNA polymerase epsilon subunit 2 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F Tsp_09484 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E Tsp_05750 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E Tsp_05685 flap endonuclease 1a K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E Tsp_04168 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E Tsp_08702 putative DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E Tsp_10827 7 transmembrane receptor K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E Tsp_01603 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E Tsp_07629 poly [ADP-ribose] polymerase K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F Tsp_01606 centrin, an EF hand Ca 2+ binding protein K10840 CETN2; centrin-2
E Cul4-DDB2 complex
F Tsp_12318 cullin-4B K10609 CUL4; cullin 4
F Tsp_03905 cullin-4B K10609 CUL4; cullin 4
F Tsp_02888 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F Tsp_05375 DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F Tsp_09661 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F Tsp_11760 DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F Tsp_09788 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F Tsp_02387 DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F Tsp_11644 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F Tsp_00326 DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F Tsp_03557 DNA-directed RNA polymerase II subunit RPB9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F Tsp_09153 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F Tsp_01995 DNA-directed RNA polymerase II subunit RPB11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F Tsp_06400 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F Tsp_12318 cullin-4B K10609 CUL4; cullin 4
F Tsp_03905 cullin-4B K10609 CUL4; cullin 4
F Tsp_02888 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F Tsp_10487 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F Tsp_04394 DNA excision repair protein ERCC-6 K10841 ERCC6; DNA excision repair protein ERCC-6
F Tsp_00542 transcription elongation factor 1 K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E Tsp_07390 DNA excision repair protein haywire K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E Tsp_03297 TFIIH basal transcription factor complex helicase subunit K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E Tsp_11030 putative BSD domain protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E Tsp_04726 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E Tsp_05888 general transcription factor IIH subunit 4 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E Tsp_00314 cyclin-dependent kinase G-2 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E Tsp_08309 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E Tsp_07124 replication protein ADNA-binding subunit K07466 RFA1; replication factor A1
E Tsp_05191 replication protein A subunit K10739 RFA2; replication factor A2
D Other NER factors
E Tsp_10304 putative DNA repair protein K10847 XPA; DNA-repair protein complementing XP-A cells
E Tsp_01641 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E Tsp_10891 putative ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E Tsp_05200 putative DNA-repair protein K10846 ERCC5; DNA excision repair protein ERCC-5
E Tsp_04168 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E Tsp_10723 putative HEAT repeat-containing domain protein K03872 ELOC; elongin-C
E Tsp_10721 transcription elongation factor B polypeptide 1 K03872 ELOC; elongin-C
E Tsp_04220 RNA polymerase II transcription factor SIII subunit A family protein K15076 ELOA; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Tsp_09659 DNA mismatch repair protein Msh2 K08735 MSH2; DNA mismatch repair protein MSH2
E Tsp_09358 DNA mismatch repair protein Msh6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E Tsp_09579 DNA mismatch repair protein Mlh1 K08734 MLH1; DNA mismatch repair protein MLH1
E Tsp_08837 mismatch repair endonuclease PMS2 K10858 PMS2; DNA mismatch repair protein PMS2
D DNA polymerase delta complex
E Tsp_06599 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E Tsp_13254 DNA polymerase subunit delta-2 K02328 POLD2; DNA polymerase delta subunit 2
E Tsp_02376 DNA polymerase subunit delta-2 K02328 POLD2; DNA polymerase delta subunit 2
D RPA (replication factor A)
E Tsp_07124 replication protein ADNA-binding subunit K07466 RFA1; replication factor A1
E Tsp_05191 replication protein A subunit K10739 RFA2; replication factor A2
D RFC (replication factor C)
E Tsp_06737 ATPase, AAA family K10754 RFC1; replication factor C subunit 1
E Tsp_00133 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E Tsp_15369 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E Tsp_04544 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E Tsp_10836 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E Tsp_01414 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E Tsp_05750 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E Tsp_04168 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E Tsp_02717 putative WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E Tsp_12012 double-strand break repair protein MRE11A K10865 MRE11; double-strand break repair protein MRE11
D BRCA1-core complex
D BRCA1-A complex
E Tsp_03084 hypothetical protein K12173 BRE; BRCA1-A complex subunit BRE
D BRCA1-B complex
E Tsp_11487 fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E Tsp_12342 fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E Tsp_00165 fanconi anemia group J protein-like protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E Tsp_12509 putative BRCA1 domain protein K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E Tsp_13098 putative DNA topoisomerase II-binding protein 1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E Tsp_01289 putative BRCA1 domain protein K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E Tsp_12012 double-strand break repair protein MRE11A K10865 MRE11; double-strand break repair protein MRE11
D BRCA complex
E Tsp_00590 putative BRCA2 repeat-containing domain protein K08775 BRCA2; breast cancer 2 susceptibility protein
E Tsp_02540 DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E Tsp_02540 DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51
E Tsp_01653 DNA repair protein RAD51 K10870 RAD51L2; RAD51-like protein 2
E Tsp_01899 DNA repair protein RAD51 K10871 RAD51L3; RAD51-like protein 3
D Rad52 family proteins
D Rad54 family proteins
E Tsp_09697 DNA repair protein Rhp54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E Tsp_01640 ATP-dependent DNA helicase Q1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E Tsp_13761 DNA topoisomerase domain protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Tsp_06514 DNA topoisomerase 3-beta-1 protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Tsp_06572 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Tsp_05364 protein RMI1-like protein K10990 RMI1; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E Tsp_07124 replication protein ADNA-binding subunit K07466 RFA1; replication factor A1
E Tsp_05191 replication protein A subunit K10739 RFA2; replication factor A2
D Protein phosphatase 4
E Tsp_10249 putative serine/threonine-protein phosphatase 4 regulatory subunit 1 K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1
E Tsp_03970 putative serine/threonine-protein phosphatase 4 regulatory subunit 2-A K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E Tsp_02930 SMEK protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E Tsp_10055 putative HEAT repeat-containing domain protein K15426 PPP4R4; serine/threonine-protein phosphatase 4 regulatory subunit 4
D AP-5 complex
D SMC5-SMC6 complex
E Tsp_08511 putative RecF/RecN/SMC N domain protein K22803 SMC5; structural maintenance of chromosomes protein 5
D Other HR factors
E Tsp_11144 crossover junction endonuclease EME1 superfamily K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E Tsp_02048 putative 3'-5' exonuclease K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1]
E Tsp_04894 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E Tsp_04135 Swi5 family protein K10991 SWI5; DNA repair protein Swi5/Sae3
E Tsp_01025 GIY-YIG domain-containing protein 1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E Tsp_03741 putative tetratricopeptide repeat-containing domain protein K09257 NFKBIL2; NF-kappa-B inhibitor-like protein 2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E Tsp_07593 putative Ku70/Ku80 beta-barrel domain protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
E Tsp_00850 hypothetical protein K06642 PRKDC; DNA-dependent protein kinase catalytic subunit [EC:2.7.11.1]
D MRX complex
E Tsp_12012 double-strand break repair protein MRE11A K10865 MRE11; double-strand break repair protein MRE11
D DNA Ligase 4 complex
E Tsp_10986 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E Tsp_01603 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E Tsp_04181 artemis protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
E Tsp_12018 putative TRAF and TNF receptor-associated protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
E Tsp_11154 hypothetical protein K10898 FAAP24; fanconi anemia-associated protein
D FA core complex binding factors
E Tsp_06034 putative helix-loop-helix DNA-binding domain protein K06054 HES1; hairy and enhancer of split 1
E Tsp_10345 hypothetical protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E Tsp_13761 DNA topoisomerase domain protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Tsp_06514 DNA topoisomerase 3-beta-1 protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Tsp_06572 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E Tsp_05364 protein RMI1-like protein K10990 RMI1; RecQ-mediated genome instability protein 1
D FANCD2-I complex
E Tsp_11859 putative fanconi anemia group I protein K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E Tsp_00590 putative BRCA2 repeat-containing domain protein K08775 BRCA2; breast cancer 2 susceptibility protein
E Tsp_11487 fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E Tsp_12342 fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E Tsp_00165 fanconi anemia group J protein-like protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E Tsp_08014 putative coiled-coil domain-containing protein MTMR15 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E Tsp_02540 DNA repair and recombination protein RadA K04482 RAD51; DNA repair protein RAD51
E Tsp_01653 DNA repair protein RAD51 K10870 RAD51L2; RAD51-like protein 2
E Tsp_01812 hypothetical protein K11137 TELO2; telomere length regulation protein
E Tsp_10938 WD domain, G-beta repeat-containing domain protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E Tsp_02060 hypothetical protein K15500 PPP6R2; serine/threonine-protein phosphatase 6 regulatory subunit 2
D Ubiquitin ligases
D Others
E Tsp_03285 gastrulation defective protein 1 K24752 WDR70; WD repeat-containing protein 70
E Tsp_02717 putative WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Tsp_02614 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D Tsp_01714 DNA polymerase kappa K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D Tsp_01559 putative BRCA1 domain protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D Tsp_01282 DNA polymerase family B, exonuclease domain protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D Tsp_13770 putative ubiquitin--protein ligase K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D Tsp_05222 ubiquitin-conjugating enzyme E2 1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D Tsp_08923 ubiquitin-conjugating enzyme E2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D Tsp_08004 ubiquitin-conjugating enzyme E2 variant 2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D Tsp_10890 putative ubiquitin--protein ligase K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D Tsp_05750 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D Tsp_09283 zinc finger RAD18 domain-containing protein K24051 SPRTN; SprT-like domain-contaning protein Spartan
D Tsp_00755 acidic repeat-containing protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D Tsp_00912 cell cycle checkpoint control protein RAD9A K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D Tsp_10450 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D Tsp_00133 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D Tsp_15369 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D Tsp_04544 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D Tsp_10836 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Tsp_01414 replication factor C subunit 5 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
D Tsp_00327 timeless protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D Tsp_10710 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D Tsp_01812 hypothetical protein K11137 TELO2; telomere length regulation protein
D Tsp_00825 ATP-dependent RNA helicase DDX19B K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D Tsp_03089 ubiquitin family protein K23390 BAG6; large proline-rich protein BAG6
D Tsp_02727 ubiquitin domain-containing protein DSK2 K23388 UBL4; ubiquitin-like protein 4
D Tsp_03313 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D Tsp_05266 putative cellular tumor antigen p53 K04451 TP53; tumor protein p53
D Tsp_05158 serine/threonine-protein kinase Chk1 K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D Tsp_02608 14-3-3 protein zeta K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta
D Tsp_12572 putative calponin K17336 PLS3; plastin-3
D Tsp_07943 ankyrin repeat-containing domain protein K22808 KANK; KN motif and ankyrin repeat domain-containing protein
D Tsp_05353 vacuolar protein sorting-associating protein 4A K12196 VPS4; vacuolar protein-sorting-associated protein 4
B Other factors with a suspected DNA repair function
C DNA polymerases
D Tsp_00070 GDP-fucose protein O-fucosyltransferase 2 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D Tsp_05851 coiled-coil domain-containing protein 111 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
D Tsp_12855 putative coiled-coil domain-containing protein 111 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D Tsp_03749 three prime repair exonuclease 1 K10790 TREX1; three prime repair exonuclease 1 [EC:3.1.11.2]
D Tsp_03715 DNA cross-link repair 1A protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D Tsp_11594 putative ankyrin repeat domain-containing protein 41 K21411 ANKLE1; ankyrin repeat and LEM domain-containing protein 1
C Helicases
D Tsp_11235 putative DEAD/DEAH box helicase K19178 HELQ; POLQ-like helicase [EC:5.6.2.4]
C PSO4 complex
D Tsp_00442 putative nematode cuticle collagen domain protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D Tsp_07418 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D Tsp_11515 breast carcinoma amplified sequence 2 (BCAS2) superfamily K12861 BCAS2; pre-mRNA-splicing factor SPF27
D Tsp_06269 pleiotropic regulator 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D Tsp_07498 7,8-dihydro-8-oxoguanine triphosphatase K17816 NUDT1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase [EC:3.6.1.55 3.6.1.56]
D Tsp_12481 7,8-dihydro-8-oxoguanine triphosphatase K17816 NUDT1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase [EC:3.6.1.55 3.6.1.56]
D Tsp_11458 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D Tsp_04092 ribonucleotide reductase R2 subunit K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Tsp_07871 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Tsp_08576 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Tsp_09248 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Tsp_09872 putative helix-hairpin-helix motif protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024