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Transcription Machinery - Variovorax paradoxus B4
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E VAPA_1c27470 putative helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E VAPA_1c52370 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E VAPA_1c07420 rpoB; DNA-directed RNA polymerase, subunit beta RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E VAPA_1c07430 rpoC; DNA-directed RNA polymerase, subunit beta' RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E VAPA_1c44970 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E VAPA_1c18490 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E VAPA_1c18870 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E VAPA_1c14880 rpoE; putative RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E VAPA_1c25060 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E VAPA_1c35830 putative RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E VAPA_1c20120 putative RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E VAPA_1c14480 putative RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E VAPA_1c28030 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E VAPA_1c45520 rpoH; RNA polymerase sigma-32 factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
E VAPA_1c05460 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
E VAPA_1c42990 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E VAPA_1c28110 nusA; transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E VAPA_1c31800 nusB; N utilization substance protein B NusB K03625 nusB; transcription antitermination protein NusB
E VAPA_1c07370 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E VAPA_1c12620 putative stringent starvation protein A K03599 sspA; stringent starvation protein A
E VAPA_1c12630 putative stringent starvation protein B K03600 sspB; stringent starvation protein B
E VAPA_1c14890 rseA1; putative anti sigma-E protein RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
E VAPA_1c14900 putative sigma E regulatory protein, MucB/RseB family K03598 rseB; sigma-E factor negative regulatory protein RseB
D Transcription elongation factors
E VAPA_1c09590 dksA; putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
E VAPA_2c03360 putative transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
E VAPA_1c29330 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E VAPA_1c44990 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E VAPA_1c24620 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024