+D GENES KO #

  KEGG Orthology (KO) - Yersinia pestis Pestoides F (biovar Antiqua)

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:ypp00010] D YPDSF_2084 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YPDSF_0182 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YPDSF_3826 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YPDSF_3569 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YPDSF_3814 hypothetical protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D YPDSF_0593 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YPDSF_3324 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YPDSF_3818 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D YPDSF_0977 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D YPDSF_0592 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D YPDSF_2564 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YPDSF_3179 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YPDSF_3841 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D YPDSF_2983 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YPDSF_0754 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D YPDSF_1058 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D YPDSF_0740 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D YPDSF_2935 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D YPDSF_2936 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_0812 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D YPDSF_1475 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YPDSF_0956 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D YPDSF_3718 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YPDSF_2562 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D YPDSF_3878 hypothetical protein K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D YPDSF_1589 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YPDSF_0978 hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D YPDSF_0065 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D YPDSF_2439 6-phospho-beta-glucosidase. Glycosyl Hydrolase family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D YPDSF_2103 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YPDSF_1839 PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:ypp00020] D YPDSF_2589 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D YPDSF_0913 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D YPDSF_2940 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D YPDSF_1807 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D YPDSF_2584 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D YPDSF_2583 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_2581 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D YPDSF_2582 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D YPDSF_2586 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YPDSF_2585 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YPDSF_2588 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D YPDSF_2587 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D YPDSF_3614 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YPDSF_3615 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YPDSF_3616 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YPDSF_3617 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D D YPDSF_3026 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D YPDSF_0869 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D YPDSF_3565 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YPDSF_0065 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D YPDSF_2935 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D YPDSF_2936 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D YPDSF_0812 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:ypp00030] D YPDSF_0182 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YPDSF_1056 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D YPDSF_2548 hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D YPDSF_1435 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D YPDSF_0082 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D YPDSF_0589 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YPDSF_3046 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YPDSF_3047 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YPDSF_3169 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D YPDSF_0598 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D YPDSF_2404 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D YPDSF_3008 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D YPDSF_3197 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D YPDSF_2373 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D YPDSF_0229 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D YPDSF_0228 carbohydrate kinase K00852 rbsK; ribokinase [EC:2.7.1.15] D YPDSF_3195 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D YPDSF_1589 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YPDSF_3274 PhnN protein K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D YPDSF_1106 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D YPDSF_1943 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D YPDSF_1055 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D YPDSF_0017 D-isomer specific 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D YPDSF_3318 gluconate kinase K00851 idnK; gluconokinase [EC:2.7.1.12] D YPDSF_1950 gluconate kinase K00851 idnK; gluconokinase [EC:2.7.1.12] D YPDSF_3356 2-keto-3-deoxygluconate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D YPDSF_0593 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YPDSF_3324 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YPDSF_3569 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YPDSF_3814 hypothetical protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D YPDSF_3826 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:ypp00040] D YPDSF_3208 pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D YPDSF_1725 exopolygalacturonate lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9] D YPDSF_1735 oligogalacturonate lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6] D YPDSF_1722 hypothetical protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25] D YPDSF_1723 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D YPDSF_0675 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D YPDSF_1724 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D YPDSF_0366 D-glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D YPDSF_0367 tagaturonate reductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58] D YPDSF_0368 D-altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7] D YPDSF_2413 D-mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D YPDSF_2414 fructuronate reductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D YPDSF_0960 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D YPDSF_1437 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_1436 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_3027 L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D YPDSF_3028 hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D YPDSF_3034 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D YPDSF_0904 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D YPDSF_0082 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D YPDSF_0881 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D YPDSF_0880 L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16] D YPDSF_3781 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D YPDSF_2405 carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D YPDSF_3780 D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D YPDSF_3642 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D YPDSF_3644 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D YPDSF_0821 mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D YPDSF_3325 hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15] D YPDSF_0244 carbohydrate kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47] C 00051 Fructose and mannose metabolism [PATH:ypp00051] D YPDSF_2841 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D YPDSF_0870 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D YPDSF_1892 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YPDSF_2736 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YPDSF_2738 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D YPDSF_2740 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D YPDSF_2741 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D YPDSF_2739 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D YPDSF_1408 racemase K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68] D YPDSF_1410 oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D YPDSF_3643 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14] D YPDSF_3642 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D YPDSF_3644 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D YPDSF_3826 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YPDSF_3569 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YPDSF_3814 hypothetical protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D YPDSF_0026 D-mannitol 1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D YPDSF_2398 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D YPDSF_3780 D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D YPDSF_0821 mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D YPDSF_0593 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YPDSF_3324 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YPDSF_3818 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D YPDSF_3008 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D YPDSF_2397 PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D YPDSF_1366 PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D YPDSF_1367 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component D YPDSF_1368 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component D YPDSF_0025 PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D YPDSF_1970 haloacid dehalogenase-like hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50] D YPDSF_0706 hypothetical protein K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:ypp00052] D YPDSF_2562 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D YPDSF_2560 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D YPDSF_2559 UDP-glucose-hexose-1-phosphate uridylyltransferase / UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D YPDSF_2558 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D YPDSF_1437 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_1436 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_1589 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YPDSF_2084 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YPDSF_1792 beta-galactosidase. Glycosyl Hydrolase family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D YPDSF_1394 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D YPDSF_3826 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YPDSF_0670 tagatose-bisphosphate aldolase catalytic subunit K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D YPDSF_0682 tagatose-bisphosphate aldolase noncatalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ D YPDSF_0666 glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D YPDSF_2833 maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D YPDSF_0677 PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D YPDSF_0680 PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D YPDSF_0679 PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D YPDSF_0678 PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D YPDSF_0676 N-acetylglucosamine 6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25] D YPDSF_0681 phosphosugar isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] C 00053 Ascorbate and aldarate metabolism [PATH:ypp00053] D YPDSF_0960 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D YPDSF_1976 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D YPDSF_1977 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D YPDSF_1978 membrane protein K03475 ulaA; ascorbate PTS system EIIC component D YPDSF_3028 hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D YPDSF_3034 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D YPDSF_0904 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D YPDSF_3027 L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53] C 00500 Starch and sucrose metabolism [PATH:ypp00500] D YPDSF_0666 glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D YPDSF_2833 maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D YPDSF_1437 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_1436 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_0401 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YPDSF_2692 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YPDSF_1594 PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D YPDSF_1596 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D YPDSF_1595 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D YPDSF_2439 6-phospho-beta-glucosidase. Glycosyl Hydrolase family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D YPDSF_2751 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D YPDSF_3305 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D YPDSF_3304 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D YPDSF_3307 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D YPDSF_3303 glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D YPDSF_0052 Glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D YPDSF_3306 alpha-amylase K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196] D YPDSF_0016 alpha-amylase protein K01176 AMY; alpha-amylase [EC:3.2.1.1] D YPDSF_0053 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D YPDSF_2103 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YPDSF_0304 PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D YPDSF_0303 trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D YPDSF_1589 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YPDSF_2084 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YPDSF_0182 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YPDSF_2841 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ypp00520] D YPDSF_1832 beta-N-acetylhexosaminidase. Glycosyl Hydrolase family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D YPDSF_2621 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D YPDSF_2103 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YPDSF_2625 pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D YPDSF_1820 N-acetylglucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59] D YPDSF_2627 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D YPDSF_2626 glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D YPDSF_2841 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D YPDSF_3917 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D YPDSF_3549 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D YPDSF_3916 UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D YPDSF_2268 glucokinase protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D YPDSF_0774 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D YPDSF_0328 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D YPDSF_3381 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D YPDSF_2126 N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60] D YPDSF_2128 hypothetical protein K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D YPDSF_2129 N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D YPDSF_3482 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D YPDSF_3481 UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D YPDSF_0730 formyl transferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D YPDSF_0728 conserved hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D YPDSF_0729 glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D YPDSF_0731 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D YPDSF_1839 PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D YPDSF_2084 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YPDSF_1589 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YPDSF_1437 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_1436 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_0960 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D YPDSF_2560 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D YPDSF_2559 UDP-glucose-hexose-1-phosphate uridylyltransferase / UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D YPDSF_2558 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D YPDSF_1366 PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D YPDSF_1367 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component D YPDSF_1368 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component D YPDSF_0182 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YPDSF_0870 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D YPDSF_1892 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YPDSF_2736 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YPDSF_2738 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D YPDSF_2740 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D YPDSF_2741 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D YPDSF_2739 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D YPDSF_2751 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D YPDSF_2750 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D YPDSF_2749 putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D YPDSF_2752 cdp-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D YPDSF_2748 paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342] D YPDSF_3305 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:ypp00620] D YPDSF_3718 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YPDSF_0812 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D YPDSF_2935 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D YPDSF_2936 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_2312 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D YPDSF_0956 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D YPDSF_1475 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YPDSF_1973 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D YPDSF_1974 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D YPDSF_0754 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D YPDSF_1058 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D YPDSF_1652 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D YPDSF_0266 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D YPDSF_0265 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D YPDSF_1993 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D YPDSF_1528 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D YPDSF_1407 L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D YPDSF_2339 pyruvate dehydrogenase (cytochrome) K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D YPDSF_0817 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D YPDSF_2519 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D YPDSF_0765 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D YPDSF_1633 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D YPDSF_2286 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D YPDSF_0017 D-isomer specific 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D YPDSF_1463 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D YPDSF_2139 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D YPDSF_3565 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YPDSF_3026 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D YPDSF_0869 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D YPDSF_3614 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YPDSF_3615 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YPDSF_3616 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YPDSF_3617 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D D YPDSF_3539 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D YPDSF_0065 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D YPDSF_0740 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D YPDSF_0173 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D YPDSF_3106 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ypp00630] D YPDSF_0174 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D YPDSF_3718 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YPDSF_0173 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D YPDSF_3565 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YPDSF_2589 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D YPDSF_0913 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D YPDSF_2940 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D YPDSF_2486 catalase K03781 katE; catalase [EC:1.11.1.6] D YPDSF_0017 D-isomer specific 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D YPDSF_0083 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D YPDSF_3880 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YPDSF_2251 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D YPDSF_0609 glycine dehydrogenase (decarboxylating) beta subunit / glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D YPDSF_0607 aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_0608 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D YPDSF_3346 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D YPDSF_1907 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D YPDSF_1055 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D YPDSF_0034 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D YPDSF_0035 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D YPDSF_0036 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D YPDSF_0037 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D YPDSF_0963 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D YPDSF_1154 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:ypp00640] D YPDSF_3718 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YPDSF_1973 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D YPDSF_1974 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_2312 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D YPDSF_0270 zinc-binding dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_1652 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D YPDSF_0266 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D YPDSF_0265 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D YPDSF_1993 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D YPDSF_2194 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YPDSF_2582 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D YPDSF_2581 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D YPDSF_2677 aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D YPDSF_2940 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D YPDSF_1533 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D YPDSF_0462 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:ypp00650] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_3930 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D YPDSF_0956 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D YPDSF_1907 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D YPDSF_2586 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YPDSF_2585 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YPDSF_2588 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D YPDSF_2587 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D YPDSF_3614 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YPDSF_3615 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YPDSF_3616 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YPDSF_3617 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D D YPDSF_2194 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YPDSF_0294 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YPDSF_2406 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YPDSF_2312 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D YPDSF_0812 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D YPDSF_1517 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D YPDSF_3513 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_3102 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_0849 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_3101 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YPDSF_0848 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YPDSF_3512 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:ypp00660] D YPDSF_3513 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_3102 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_0849 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_3101 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YPDSF_0848 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YPDSF_3512 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D YPDSF_1198 4-hydroxybutyrate coenzyme A transferase K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-] D YPDSF_2582 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D YPDSF_2581 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D YPDSF_1197 transcription regulatory protein K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56] D YPDSF_1196 citrate lyase beta chain K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25] D YPDSF_3821 transferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D YPDSF_3108 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D YPDSF_3109 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D YPDSF_3107 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:ypp00562] D YPDSF_2244 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D YPDSF_1799 histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] D YPDSF_2674 myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D YPDSF_2675 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D YPDSF_2668 hypothetical protein K03335 iolE; inosose dehydratase [EC:4.2.1.44] D YPDSF_2676 thiamine pyrophosphate-dependent protein K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D YPDSF_2667 hypothetical protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D YPDSF_2669 carbohydrate kinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D YPDSF_2677 aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D YPDSF_3818 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:ypp00190] D YPDSF_1965 NADH dehydrogenase I chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D YPDSF_1964 NADH dehydrogenase I chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D YPDSF_1963 NADH dehydrogenase I chain C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D YPDSF_1962 NADH dehydrogenase I chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D YPDSF_1961 NADH dehydrogenase I chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D YPDSF_1960 NADH dehydrogenase I chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D YPDSF_1959 NADH dehydrogenase I chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D YPDSF_1958 NADH Dehydrogenase I chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D YPDSF_1957 NADH dehydrogenase I chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D YPDSF_1956 NADH dehydrogenase i chain k K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D YPDSF_1955 NADH dehydrogenase I chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D YPDSF_1954 NADH dehydrogenase I chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D YPDSF_1953 NADH dehydrogenase I chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D YPDSF_1830 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D YPDSF_2586 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YPDSF_2585 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YPDSF_2588 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D YPDSF_2587 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit D YPDSF_3614 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YPDSF_3615 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YPDSF_3616 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YPDSF_3617 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D D YPDSF_2803 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D YPDSF_2802 cytochrome O ubiquinol oxidase subunit CyoD K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D YPDSF_2801 cytochrome O ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D YPDSF_2800 cytochrome O ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D YPDSF_2799 cytochrome O ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D YPDSF_2579 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D YPDSF_2578 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D YPDSF_3912 ATP synthase alpha subunit protein K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D YPDSF_3914 ATP synthase beta subunit protein K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D YPDSF_3913 ATP synthase gamma subunit protein K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D YPDSF_3911 ATP synthase delta subunit protein K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D YPDSF_3915 ATP synthase epsilon subunit protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D YPDSF_3908 ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D YPDSF_3910 ATP synthase subunit B protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D YPDSF_3909 ATP synthase subunit C protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D YPDSF_3570 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D YPDSF_2186 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:ypp00680] D YPDSF_1475 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YPDSF_1476 esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D YPDSF_0034 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D YPDSF_0035 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D YPDSF_0036 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D YPDSF_0037 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D YPDSF_3629 formate dehydrogenase alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-] D YPDSF_2251 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D YPDSF_2983 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YPDSF_3539 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D YPDSF_3565 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YPDSF_0593 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YPDSF_3324 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YPDSF_3569 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YPDSF_3814 hypothetical protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D YPDSF_3826 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YPDSF_1875 hypothetical protein K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147] D YPDSF_1973 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D YPDSF_1974 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D YPDSF_3718 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YPDSF_0740 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D YPDSF_2564 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YPDSF_3179 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YPDSF_3841 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D YPDSF_2408 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YPDSF_0599 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YPDSF_2306 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D YPDSF_3192 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:ypp00910] D YPDSF_2143 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D YPDSF_2142 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D YPDSF_0088 assimilatory nitrite reductase (NAD(P)H) large subunit precursor K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D YPDSF_0087 assimilatory nitrite reductase (NAD(P)H) small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D YPDSF_2337 Hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D YPDSF_3336 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D YPDSF_3880 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YPDSF_0340 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D YPDSF_0339 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D YPDSF_2948 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D YPDSF_0692 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:ypp00920] D YPDSF_2122 thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D YPDSF_3825 exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D YPDSF_2121 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D YPDSF_2120 sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D YPDSF_2119 sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D YPDSF_0107 taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein D YPDSF_0109 taurine transport system permease protein K15552 tauC; taurine transport system permease protein D YPDSF_0108 taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D YPDSF_0110 taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D YPDSF_0231 aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D YPDSF_0233 aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein D YPDSF_0234 aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D YPDSF_0232 alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D YPDSF_0230 NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D YPDSF_2995 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D YPDSF_2994 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D YPDSF_2996 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D YPDSF_3578 inositol monophosphatase family protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D YPDSF_2989 hypothetical protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D YPDSF_2987 sulfite reductase (NADPH) alpha subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D YPDSF_2988 sulfite reductase (NADPH) beta subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D YPDSF_2501 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D YPDSF_0050 hypothetical protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D YPDSF_3836 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D YPDSF_2100 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D YPDSF_3761 pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D YPDSF_2782 Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D YPDSF_0171 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D YPDSF_3792 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D YPDSF_2072 dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D YPDSF_3035 anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D YPDSF_3036 anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D YPDSF_2073 dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D YPDSF_3037 anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D YPDSF_2074 dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:ypp00061] D YPDSF_1652 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D YPDSF_0266 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D YPDSF_0265 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D YPDSF_1993 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D YPDSF_1847 acyl carrier protein K02078 acpP; acyl carrier protein D YPDSF_1849 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YPDSF_1512 acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YPDSF_1850 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D YPDSF_1146 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D YPDSF_1145 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D YPDSF_2003 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YPDSF_1519 beta-ketoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YPDSF_1846 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YPDSF_1547 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YPDSF_1848 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YPDSF_1518 beta-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YPDSF_1543 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D YPDSF_1657 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YPDSF_1520 putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YPDSF_3930 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D YPDSF_3104 AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_1047 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:ypp00071] D YPDSF_3387 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_2014 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_2872 acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D YPDSF_3104 AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_1047 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_1710 Aas bifunctional protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D YPDSF_1475 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YPDSF_0956 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:ypp00561] D YPDSF_3346 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D YPDSF_3011 dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D YPDSF_3012 hypothetical protein K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D YPDSF_3813 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30] D YPDSF_3048 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D YPDSF_3659 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D YPDSF_1851 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D YPDSF_0431 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D YPDSF_0455 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D YPDSF_3658 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D YPDSF_1394 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:ypp00564] D YPDSF_3837 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D YPDSF_3443 anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D YPDSF_3302 aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D YPDSF_3442 anaerobic glycerol-3-phosphate dehydrogenase subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3] D YPDSF_3441 anaerobic glycerol-3-phosphate dehydrogenase subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C D YPDSF_3659 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D YPDSF_0431 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D YPDSF_0455 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D YPDSF_3658 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D YPDSF_3451 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D YPDSF_3447 lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5] D YPDSF_3444 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D YPDSF_3409 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D YPDSF_1710 Aas bifunctional protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D YPDSF_3352 CDP-diacylglycerol pyrophosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26] D YPDSF_1662 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D YPDSF_2704 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D YPDSF_2909 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D YPDSF_3611 phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D YPDSF_1259 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D YPDSF_2814 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D YPDSF_0911 phosphatidylglycerophosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D YPDSF_2267 membrane protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27] D YPDSF_0947 cardiolipin synthetase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:ypp00565] D YPDSF_3451 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:ypp00600] D YPDSF_1140 glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D YPDSF_1792 beta-galactosidase. Glycosyl Hydrolase family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D YPDSF_1394 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D YPDSF_2621 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism D YPDSF_3451 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00591 Linoleic acid metabolism D YPDSF_3451 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:ypp00592] D YPDSF_3451 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D YPDSF_3387 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_2014 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:ypp01040] D YPDSF_2718 acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D YPDSF_2776 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D YPDSF_0939 acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:ypp00230] D YPDSF_0446 MutT-family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D YPDSF_0070 hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D YPDSF_3195 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D YPDSF_1589 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YPDSF_1106 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D YPDSF_1989 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D YPDSF_3727 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D YPDSF_2179 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D YPDSF_1348 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D YPDSF_2264 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D YPDSF_2178 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D YPDSF_2715 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D YPDSF_2714 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D YPDSF_2164 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D YPDSF_1812 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D YPDSF_3726 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D YPDSF_3762 phosphoribosyl transferase protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D YPDSF_2760 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D YPDSF_2729 Protein ushA precursor:UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D YPDSF_2730 5'-nucleotidase/2' 3'-cyclic phosphodiesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D YPDSF_3002 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D YPDSF_2629 N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D YPDSF_0068 hypothetical protein K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D YPDSF_2734 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D YPDSF_2526 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D YPDSF_3194 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D YPDSF_2843 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D YPDSF_2912 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D YPDSF_2947 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D YPDSF_2216 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D YPDSF_2228 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D YPDSF_3180 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D YPDSF_0570 hypothetical protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D YPDSF_2854 xanthine-guanine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D YPDSF_2215 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D YPDSF_2926 GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7] D YPDSF_3865 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D YPDSF_2479 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_1623 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_4071 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_1624 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YPDSF_4070 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YPDSF_2480 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YPDSF_3264 ribonucleoside-triphosphate reductase class III catalytic subunit / ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D YPDSF_2975 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D YPDSF_1968 hypothetical protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D YPDSF_3867 guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D YPDSF_3488 Guanosine-5'-triphosphate,3'-diphosphate diphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D YPDSF_2187 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D YPDSF_2980 GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D YPDSF_3465 adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D YPDSF_2518 adenylate cyclase 2 K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D YPDSF_1575 3',5'-cyclic-nucleotide phosphodiesterase K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] D YPDSF_3596 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D YPDSF_0855 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D YPDSF_1680 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D YPDSF_3579 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D YPDSF_2754 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D YPDSF_2981 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D YPDSF_0448 Icc-like protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D YPDSF_3144 bis(5'nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D YPDSF_2996 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D YPDSF_2995 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D YPDSF_2994 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D YPDSF_1628 hypothetical protein K16842 hpxB; allantoinase [EC:3.5.2.5] D YPDSF_2885 amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D YPDSF_2889 hypothetical protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112] D YPDSF_1609 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D YPDSF_1610 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D YPDSF_1611 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D YPDSF_2897 amidase K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5] C 00240 Pyrimidine metabolism [PATH:ypp00240] D YPDSF_3151 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D YPDSF_3152 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D YPDSF_0309 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D YPDSF_0308 aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D YPDSF_1859 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D YPDSF_2280 dihydroorotate oxidase A K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D YPDSF_3860 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D YPDSF_0907 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D YPDSF_1666 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D YPDSF_2228 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D YPDSF_2981 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D YPDSF_0275 inhibitor of septum formation K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D YPDSF_0373 hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D YPDSF_2982 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D YPDSF_2304 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D YPDSF_0967 pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65] D YPDSF_1452 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D YPDSF_2729 Protein ushA precursor:UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D YPDSF_2730 5'-nucleotidase/2' 3'-cyclic phosphodiesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D YPDSF_3002 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D YPDSF_2629 N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D YPDSF_0847 haloacid dehalogenase-like hydrolase family protein K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D YPDSF_3403 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D YPDSF_2843 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D YPDSF_2177 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D YPDSF_3579 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D YPDSF_1680 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D YPDSF_1462 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D YPDSF_0089 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D YPDSF_3264 ribonucleoside-triphosphate reductase class III catalytic subunit / ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D YPDSF_1451 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D YPDSF_2479 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_1623 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_4071 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_1624 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YPDSF_4070 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YPDSF_2480 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YPDSF_1968 hypothetical protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D YPDSF_1842 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D YPDSF_3858 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D YPDSF_3196 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D YPDSF_0957 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D YPDSF_1702 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:ypp00250] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YPDSF_1561 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D YPDSF_2309 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D YPDSF_0973 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D YPDSF_3902 aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D YPDSF_2630 asparagine synthase (glutamine-hydrolysing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D YPDSF_2884 amidase-type enzyme K13566 NIT2; omega-amidase [EC:3.5.1.3] D YPDSF_1967 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D YPDSF_3625 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D YPDSF_1406 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D YPDSF_3535 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D YPDSF_3596 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D YPDSF_1812 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D YPDSF_0309 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D YPDSF_0308 aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D YPDSF_2194 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YPDSF_0294 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YPDSF_2406 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YPDSF_0340 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D YPDSF_0339 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D YPDSF_3336 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D YPDSF_1274 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D YPDSF_3880 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YPDSF_3151 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D YPDSF_3152 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D YPDSF_0565 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YPDSF_1184 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YPDSF_3917 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D YPDSF_1989 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:ypp00260] D YPDSF_0181 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D YPDSF_3174 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D YPDSF_3791 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D YPDSF_3313 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D YPDSF_3173 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D YPDSF_3172 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D YPDSF_2340 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D YPDSF_2251 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D YPDSF_0017 D-isomer specific 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D YPDSF_3346 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D YPDSF_2564 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YPDSF_3179 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YPDSF_3841 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D YPDSF_2408 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YPDSF_0599 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YPDSF_2306 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D YPDSF_3192 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D YPDSF_3846 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D YPDSF_3845 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D YPDSF_0609 glycine dehydrogenase (decarboxylating) beta subunit / glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D YPDSF_0607 aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_0608 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D YPDSF_2909 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D YPDSF_2532 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D YPDSF_2531 betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D YPDSF_1352 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D YPDSF_3509 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D YPDSF_0008 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D YPDSF_2002 aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D YPDSF_1761 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D YPDSF_0930 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D YPDSF_0929 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D YPDSF_1447 decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86] C 00270 Cysteine and methionine metabolism [PATH:ypp00270] D YPDSF_3836 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D YPDSF_2100 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D YPDSF_3761 pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D YPDSF_2782 Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D YPDSF_3692 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YPDSF_0465 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YPDSF_2113 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YPDSF_0177 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D YPDSF_3405 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D YPDSF_0585 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D YPDSF_2943 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D YPDSF_2944 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D YPDSF_1871 N-acylhomoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D YPDSF_0534 N-acylhomoserine lactone synthase YspI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D YPDSF_2974 methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D YPDSF_2878 5'-methylthioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100] D YPDSF_2912 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D YPDSF_2879 translation initiation factor 2B subunit I family (IF-2BI) K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D YPDSF_2882 methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] D YPDSF_2881 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D YPDSF_2880 methionine salvage pathway enzyme E-2/E-2' K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D YPDSF_3650 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D YPDSF_1745 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D YPDSF_3061 autoinducer-2 production protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D YPDSF_0181 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D YPDSF_3174 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D YPDSF_3791 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D YPDSF_3313 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D YPDSF_0171 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D YPDSF_3792 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D YPDSF_3511 branched chain amino acid aminotransferase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YPDSF_3060 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D YPDSF_0580 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YPDSF_2501 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D YPDSF_2002 aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D YPDSF_1761 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D YPDSF_1281 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D YPDSF_3565 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YPDSF_1352 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D YPDSF_2118 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D YPDSF_2408 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YPDSF_0599 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YPDSF_2306 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:ypp00280] D YPDSF_3511 branched chain amino acid aminotransferase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_3387 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_2014 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_0255 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D YPDSF_2677 aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D YPDSF_1517 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ypp00290] D YPDSF_3509 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D YPDSF_0008 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D YPDSF_3108 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D YPDSF_3109 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D YPDSF_3107 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D YPDSF_3513 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_3102 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_0849 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_3101 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YPDSF_0848 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YPDSF_3512 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D YPDSF_3501 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D YPDSF_3510 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D YPDSF_3511 branched chain amino acid aminotransferase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YPDSF_0015 valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D YPDSF_1967 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D YPDSF_3106 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:ypp00300] D YPDSF_0181 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D YPDSF_3174 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D YPDSF_3791 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D YPDSF_3313 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D YPDSF_2167 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D YPDSF_3153 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D YPDSF_1672 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D YPDSF_0098 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D YPDSF_2158 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D YPDSF_3462 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D YPDSF_1713 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D YPDSF_1188 aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D YPDSF_3092 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D YPDSF_3091 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:ypp00310] D YPDSF_2583 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_2002 aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D YPDSF_1761 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D YPDSF_0294 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YPDSF_2406 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YPDSF_2298 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93] D YPDSF_0742 hypothetical protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-] C 00220 Arginine biosynthesis [PATH:ypp00220] D YPDSF_3256 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D YPDSF_1406 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D YPDSF_3535 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D YPDSF_1609 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D YPDSF_1610 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D YPDSF_1611 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D YPDSF_0565 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YPDSF_1184 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YPDSF_3880 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YPDSF_3336 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YPDSF_1967 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D YPDSF_1693 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D YPDSF_3536 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D YPDSF_3537 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D YPDSF_0098 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D YPDSF_3538 acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:ypp00330] D YPDSF_0089 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D YPDSF_2494 amino acid decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D YPDSF_0586 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D YPDSF_0576 hypothetical protein K10536 aguA; agmatine deiminase [EC:3.5.3.12] D YPDSF_0577 carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D YPDSF_0554 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D YPDSF_2944 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D YPDSF_2943 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D YPDSF_2180 spermine/spermidine N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D YPDSF_1160 arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D YPDSF_1158 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D YPDSF_1161 succinylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D YPDSF_1159 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D YPDSF_1157 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D YPDSF_0573 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D YPDSF_1274 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D YPDSF_2851 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D YPDSF_2850 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D YPDSF_1342 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:ypp00340] D YPDSF_1427 ATP phosphoribosyltransferase (homohexameric) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D YPDSF_1434 phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D YPDSF_1432 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D YPDSF_1431 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D YPDSF_1433 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D YPDSF_1430 histidinol-phosphate phosphatase / imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D YPDSF_1429 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YPDSF_1428 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D YPDSF_3759 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D YPDSF_3760 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D YPDSF_1151 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D YPDSF_1149 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D YPDSF_1154 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00350 Tyrosine metabolism [PATH:ypp00350] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YPDSF_1429 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YPDSF_3650 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D YPDSF_2502 pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D YPDSF_1475 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YPDSF_0956 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D YPDSF_1354 4-hydroxyphenylacetate 3-monooxygenase K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9] D YPDSF_1353 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D YPDSF_1359 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] D YPDSF_1360 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D YPDSF_1358 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D YPDSF_1361 5-carboxymethyl-2-hydroxymuconate delta-isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D YPDSF_1362 hypothetical protein K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] D YPDSF_1357 2-oxo-hept-3-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D YPDSF_1356 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D YPDSF_0294 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YPDSF_2406 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:ypp00360] D YPDSF_2502 pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YPDSF_1429 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YPDSF_3650 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D YPDSF_0986 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D YPDSF_3041 catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00380 Tryptophan metabolism [PATH:ypp00380] D YPDSF_2583 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_2502 pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D YPDSF_2486 catalase K03781 katE; catalase [EC:1.11.1.6] D YPDSF_3041 catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ypp00400] D YPDSF_3074 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YPDSF_0738 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YPDSF_0079 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D YPDSF_0267 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D YPDSF_0169 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D YPDSF_2844 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D YPDSF_0078 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D YPDSF_2305 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D YPDSF_2009 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D YPDSF_0925 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D YPDSF_0926 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D YPDSF_0927 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D YPDSF_0928 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D YPDSF_0930 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D YPDSF_0929 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D YPDSF_2918 chorismate mutase / prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D YPDSF_2345 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D YPDSF_2917 prephenate dehydratase / chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D YPDSF_3017 extracellular solute-binding protein K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YPDSF_1429 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YPDSF_3650 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:ypp00410] D YPDSF_2953 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D YPDSF_2194 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YPDSF_2954 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_2677 aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:ypp00430] D YPDSF_2831 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D YPDSF_0110 taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D YPDSF_1974 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D YPDSF_1973 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:ypp00440] D YPDSF_3269 PhnI protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D YPDSF_3267 PhnG protein K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D YPDSF_3268 PhnH protein K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D YPDSF_3272 phosphonates transport ATP-binding protein K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D YPDSF_3273 PhnM protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D YPDSF_3270 PhnJ protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D YPDSF_3275 PhnP protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:ypp00450] D YPDSF_3792 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D YPDSF_3692 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YPDSF_0465 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YPDSF_2113 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YPDSF_0177 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D YPDSF_3405 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D YPDSF_0748 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D YPDSF_2321 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D YPDSF_2995 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D YPDSF_2994 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D YPDSF_0970 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D YPDSF_0039 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D YPDSF_1454 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:ypp00460] D YPDSF_0401 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YPDSF_2692 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YPDSF_2831 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D YPDSF_2309 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D YPDSF_0973 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D YPDSF_3902 aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D YPDSF_2251 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:ypp00470] D YPDSF_3651 alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1] D YPDSF_3085 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D YPDSF_2002 aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D YPDSF_1761 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D YPDSF_0565 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YPDSF_1184 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YPDSF_3521 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D YPDSF_3089 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D YPDSF_0804 mandelate racemase / muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D YPDSF_1281 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D YPDSF_3462 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D YPDSF_1713 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D YPDSF_2353 hypothetical protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-] D YPDSF_2352 hypothetical protein K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-] D YPDSF_0986 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:ypp00480] D YPDSF_2831 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D YPDSF_1571 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D YPDSF_1573 hypothetical protein K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D YPDSF_1572 hypothetical protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D YPDSF_3060 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D YPDSF_0580 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D YPDSF_3251 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D YPDSF_2234 peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D YPDSF_2281 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D YPDSF_2857 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D YPDSF_0779 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D YPDSF_2382 glutathione S-transferase-family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D YPDSF_3342 NADPH-glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D YPDSF_1807 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D YPDSF_1435 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D YPDSF_1056 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D YPDSF_0726 vitamin B12 transport protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D YPDSF_3528 peroxiredoxin/glutaredoxin family protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D YPDSF_0554 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D YPDSF_2944 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:ypp00511] D YPDSF_1792 beta-galactosidase. Glycosyl Hydrolase family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D YPDSF_2621 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00540 Lipopolysaccharide biosynthesis [PATH:ypp00540] D YPDSF_1656 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D YPDSF_3081 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D YPDSF_1658 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D YPDSF_2713 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D YPDSF_1655 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D YPDSF_2299 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D YPDSF_0320 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D YPDSF_1097 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D YPDSF_0319 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D YPDSF_2295 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D YPDSF_3850 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D YPDSF_1059 lipid A biosynthesis acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D YPDSF_2418 lipid-A kinase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D YPDSF_0769 membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D YPDSF_3375 phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D YPDSF_1378 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D YPDSF_0732 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D YPDSF_0239 membrane protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D YPDSF_2871 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D YPDSF_0438 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D YPDSF_1637 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D YPDSF_3847 ADP-glyceromanno-heptose 6-epimerase precursor K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D YPDSF_3849 lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D YPDSF_3848 ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D YPDSF_3215 lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis [PATH:ypp00542] D YPDSF_3484 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ypp00541] D YPDSF_1437 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_1436 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YPDSF_2558 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D YPDSF_0960 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D YPDSF_3479 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D YPDSF_3480 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D YPDSF_3477 lipopolysaccharide biosynthesis protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D YPDSF_3478 lipopolysaccharide biosynthesis protein K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210] D YPDSF_2751 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D YPDSF_2750 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D YPDSF_2749 putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D YPDSF_2752 cdp-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D YPDSF_2748 paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342] D YPDSF_0870 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D YPDSF_1892 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YPDSF_2736 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YPDSF_2738 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D YPDSF_2740 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D YPDSF_2741 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D YPDSF_2739 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D YPDSF_3916 UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D YPDSF_3482 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D YPDSF_3481 UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 00550 Peptidoglycan biosynthesis [PATH:ypp00550] D YPDSF_0328 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D YPDSF_3381 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D YPDSF_3086 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D YPDSF_3089 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D YPDSF_3092 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D YPDSF_3085 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D YPDSF_3091 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D YPDSF_1663 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D YPDSF_0433 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D YPDSF_2372 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D YPDSF_3090 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D YPDSF_3087 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D YPDSF_0345 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D YPDSF_0071 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D YPDSF_2963 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D YPDSF_2680 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D YPDSF_2649 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D YPDSF_3093 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D YPDSF_2652 penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YPDSF_2376 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YPDSF_3555 penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:ypp00552] D YPDSF_0433 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D YPDSF_2372 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D YPDSF_3484 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:ypp00543] D YPDSF_3484 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D YPDSF_3473 UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D YPDSF_3475 hypothetical protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D YPDSF_1169 haemin storage system, HmsR protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D YPDSF_1168 haemin storage system, HmsS protein K11937 pgaD; biofilm PGA synthesis protein PgaD D YPDSF_3836 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:ypp00730] D YPDSF_3736 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D YPDSF_2209 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D YPDSF_3738 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D YPDSF_2241 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_0993 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_2808 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D YPDSF_2812 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D YPDSF_3737 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D YPDSF_2815 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D YPDSF_3609 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D YPDSF_0845 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D YPDSF_1833 hypothetical protein K07251 thiK; thiamine kinase [EC:2.7.1.89] D YPDSF_2754 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:ypp00740] D YPDSF_0912 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D YPDSF_2818 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D YPDSF_3459 haloacid dehalogenase-like hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D YPDSF_0441 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D YPDSF_2817 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D YPDSF_0756 riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9] D YPDSF_3158 FMN adenylyltransferase / riboflavin kinase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D YPDSF_1799 histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] D YPDSF_1353 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D YPDSF_3388 NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D YPDSF_0230 NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D YPDSF_0446 MutT-family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D YPDSF_1809 hypothetical protein K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D YPDSF_1988 3-octaprenyl-4hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:ypp00750] D YPDSF_0776 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D YPDSF_0778 Pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D YPDSF_0591 D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D YPDSF_1997 D-isomer specific 2-hydroxyacid dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D YPDSF_2306 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D YPDSF_3141 pyridoxal phosphate biosynthetic protein K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D YPDSF_1550 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D YPDSF_3172 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:ypp00760] D YPDSF_1561 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D YPDSF_2569 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D YPDSF_2930 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D YPDSF_2282 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D YPDSF_2526 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D YPDSF_3194 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D YPDSF_3190 transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D YPDSF_2729 Protein ushA precursor:UDP-sugar hydrolase; 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D YPDSF_2730 5'-nucleotidase/2' 3'-cyclic phosphodiesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D YPDSF_3002 5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D YPDSF_2629 N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D YPDSF_2646 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D YPDSF_2981 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D YPDSF_3734 hypothetical protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D YPDSF_2257 glutamine-dependent NAD K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D YPDSF_3053 competence-damaged protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D YPDSF_0974 pyrazinamidase/nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D YPDSF_1818 Sir2 family protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D YPDSF_2591 hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D YPDSF_3526 soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D YPDSF_0840 NAD(P) transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D YPDSF_0841 NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D YPDSF_0294 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YPDSF_2406 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:ypp00770] D YPDSF_3513 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_3102 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_0849 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YPDSF_3101 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YPDSF_0848 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YPDSF_3512 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D YPDSF_3501 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D YPDSF_3510 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D YPDSF_2955 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D YPDSF_2806 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D YPDSF_2954 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D YPDSF_3379 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D YPDSF_3857 Phosphopantothenate-cysteine ligase / Phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D YPDSF_2981 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D YPDSF_3852 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D YPDSF_2925 Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D YPDSF_1549 holo-(acyl-carrier protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D YPDSF_2828 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D YPDSF_3511 branched chain amino acid aminotransferase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YPDSF_2953 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:ypp00780] D YPDSF_2544 biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D YPDSF_2003 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YPDSF_1519 beta-ketoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YPDSF_1846 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YPDSF_1547 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YPDSF_1848 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YPDSF_1518 beta-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YPDSF_1657 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YPDSF_1520 putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YPDSF_0056 biotin biosynthesis protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D YPDSF_2545 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D YPDSF_2547 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D YPDSF_2543 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D YPDSF_0864 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D YPDSF_2546 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D YPDSF_3380 bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D YPDSF_1711 biotin sulfoxide reductas2 K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] C 00785 Lipoic acid metabolism [PATH:ypp00785] D YPDSF_2654 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D YPDSF_2655 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D YPDSF_0736 lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_2935 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D YPDSF_2936 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D YPDSF_2584 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D YPDSF_2583 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D YPDSF_0609 glycine dehydrogenase (decarboxylating) beta subunit / glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D YPDSF_0607 aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D YPDSF_0608 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:ypp00790] D YPDSF_1472 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D YPDSF_0845 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D YPDSF_1068 dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D YPDSF_0432 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D YPDSF_2956 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D YPDSF_3550 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D YPDSF_3147 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D YPDSF_1992 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D YPDSF_0912 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D YPDSF_0097 aminodeoxychorismate synthase, glutamine amidotransferase subunit K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D YPDSF_1350 aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D YPDSF_1844 aminodeoxychorismate lyase apoprotein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D YPDSF_2986 6-pyruvoyl tetrahydrobiopterin synthase family protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D YPDSF_2985 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D YPDSF_2785 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D YPDSF_1679 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D YPDSF_2538 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D YPDSF_2537 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D YPDSF_2535 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D YPDSF_3167 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D YPDSF_1481 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D YPDSF_3890 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:ypp00670] D YPDSF_3147 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D YPDSF_2708 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D YPDSF_2251 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D YPDSF_2179 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D YPDSF_3726 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D YPDSF_0163 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D YPDSF_0607 aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D YPDSF_0177 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D YPDSF_1702 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D YPDSF_0963 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D YPDSF_3790 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D YPDSF_3682 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D YPDSF_0601 5-formyltetrahydrofolate cyclo-ligase-family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:ypp00860] D YPDSF_2092 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YPDSF_1102 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D YPDSF_2968 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D YPDSF_3391 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D YPDSF_3467 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D YPDSF_3468 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D YPDSF_3732 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D YPDSF_2137 coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D YPDSF_3883 coproporphyrinogen III oxidase, anaerobic K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D YPDSF_3382 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D YPDSF_2753 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D YPDSF_3469 uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D YPDSF_2993 uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D YPDSF_0085 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D YPDSF_2803 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D YPDSF_4092 porphyrin biosynthetic protein K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D YPDSF_0921 cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D YPDSF_0131 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ypp00130] D YPDSF_3661 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D YPDSF_3660 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D YPDSF_3389 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D YPDSF_1988 3-octaprenyl-4hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D YPDSF_0606 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D YPDSF_2478 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D YPDSF_0605 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D YPDSF_3398 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D YPDSF_2631 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D YPDSF_1938 menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D YPDSF_1937 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D YPDSF_1936 hypothetical protein K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D YPDSF_1934 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D YPDSF_1933 O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D YPDSF_1935 1,4-Dihydroxy-2-naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D YPDSF_0743 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D YPDSF_3802 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D YPDSF_1268 trp repressor binding protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D YPDSF_1803 hypothetical protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:ypp00900] D YPDSF_2812 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D YPDSF_1664 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D YPDSF_2999 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D YPDSF_1104 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D YPDSF_3000 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D YPDSF_2224 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D YPDSF_3154 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D YPDSF_1517 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D YPDSF_1988 3-octaprenyl-4hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D YPDSF_2811 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D YPDSF_3562 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D YPDSF_1663 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:ypp00907] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_3387 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_2014 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D YPDSF_0589 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YPDSF_3046 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YPDSF_3047 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:ypp00523] D YPDSF_3479 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D YPDSF_3480 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ypp01053] D YPDSF_1938 menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D YPDSF_1396 phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D YPDSF_1209 salicylate synthetase K04781 mbtI; salicylate synthetase [EC:5.4.4.2 4.2.99.21] D YPDSF_1218 yersiniabactin siderophore biosynthetic protein K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D YPDSF_1214 yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase D YPDSF_1216 yersiniabactin biosynthetic protein YbtU K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component D YPDSF_1215 yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase C 01055 Biosynthesis of vancomycin group antibiotics D YPDSF_3480 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:ypp00946] D YPDSF_0401 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YPDSF_2692 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:ypp00332] D YPDSF_2851 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D YPDSF_2850 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:ypp00261] D YPDSF_2995 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D YPDSF_2994 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D YPDSF_0181 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D YPDSF_3174 homoserine dehydrogenase / aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D YPDSF_3791 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D YPDSF_3313 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D YPDSF_2167 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D YPDSF_3153 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:ypp00521] D YPDSF_2084 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YPDSF_1589 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YPDSF_2244 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D YPDSF_2674 myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D YPDSF_2675 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D YPDSF_3479 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D YPDSF_3480 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D YPDSF_2084 glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:ypp00525] D YPDSF_3479 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D YPDSF_3480 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:ypp00401] D YPDSF_2918 chorismate mutase / prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YPDSF_1429 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YPDSF_3650 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D YPDSF_0925 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D YPDSF_0926 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D YPDSF_1849 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YPDSF_1512 acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YPDSF_1848 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YPDSF_1518 beta-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D YPDSF_1847 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:ypp00999] D YPDSF_0585 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D YPDSF_0169 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D YPDSF_0401 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YPDSF_2692 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites [PATH:ypp00997] D YPDSF_0525 siderophore biosynthesis protein IucD K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] D YPDSF_1446 siderophore biosynthetic enzyme K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] D YPDSF_0527 siderophore biosynthesis protein IucB K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] D YPDSF_0528 siderophore biosynthesis protein, IucA familly K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38] D YPDSF_0529 hypothetical protein K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38] D YPDSF_0526 siderophore biosynthesis protein IucC K03895 iucC; aerobactin synthase [EC:6.3.2.39] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:ypp00362] D YPDSF_3387 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_2014 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_3355 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D YPDSF_0256 gamma carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D YPDSF_1124 decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D YPDSF_3820 hypothetical protein K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83] D YPDSF_3821 transferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] C 00627 Aminobenzoate degradation [PATH:ypp00627] D YPDSF_1528 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D YPDSF_1988 3-octaprenyl-4hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:ypp00364] D YPDSF_3404 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:ypp00625] D YPDSF_1475 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YPDSF_0956 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ypp00361] D YPDSF_3404 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:ypp00623] D YPDSF_3404 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation D YPDSF_3355 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation [PATH:ypp00633] D YPDSF_0767 NADH:flavin oxidoreductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D YPDSF_3387 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YPDSF_2014 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation C 00791 Atrazine degradation D YPDSF_1609 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D YPDSF_1610 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D YPDSF_1611 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:ypp00930] D YPDSF_3386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YPDSF_2013 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation D YPDSF_3355 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:ypp00626] D YPDSF_1475 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YPDSF_0956 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:ypp03020] D YPDSF_3745 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D YPDSF_3744 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D YPDSF_0156 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D YPDSF_3866 DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:ypp03010] D YPDSF_2303 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D YPDSF_1669 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D YPDSF_0139 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D YPDSF_0155 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D YPDSF_0150 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D YPDSF_3587 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D YPDSF_0126 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D YPDSF_0147 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D YPDSF_0335 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D YPDSF_0132 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D YPDSF_0154 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D YPDSF_0125 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D YPDSF_0153 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D YPDSF_0146 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D YPDSF_3542 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D YPDSF_3066 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D YPDSF_0142 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D YPDSF_3586 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D YPDSF_0137 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D YPDSF_3159 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D YPDSF_0429 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D YPDSF_3748 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D YPDSF_0136 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D YPDSF_0133 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D YPDSF_0134 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D YPDSF_0145 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D YPDSF_0148 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D YPDSF_3746 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D YPDSF_3585 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D YPDSF_3747 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D YPDSF_3749 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D YPDSF_0334 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D YPDSF_0143 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D YPDSF_0151 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D YPDSF_0140 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D YPDSF_0157 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D YPDSF_0149 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D YPDSF_3069 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D YPDSF_0720 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D YPDSF_3561 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D YPDSF_0138 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D YPDSF_0135 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D YPDSF_0144 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D YPDSF_2430 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D YPDSF_3560 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D YPDSF_3855 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D YPDSF_0141 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D YPDSF_3796 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D YPDSF_2769 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D YPDSF_1852 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D YPDSF_3854 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D YPDSF_3935 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D YPDSF_0719 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D YPDSF_2770 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D YPDSF_R0108 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0033 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0097 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0031 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0064 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0106 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0075 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0086 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0105 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0074 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0094 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0063 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:ypp00970] D YPDSF_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YPDSF_R0076 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YPDSF_R0044 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YPDSF_R0061 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0082 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0068 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0069 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0018 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YPDSF_R0025 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YPDSF_R0026 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YPDSF_R0029 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YPDSF_R0084 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YPDSF_R0028 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YPDSF_R0020 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D YPDSF_R0057 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YPDSF_R0058 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YPDSF_R0060 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YPDSF_R0032 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0087 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0096 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0107 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0099 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YPDSF_R0012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YPDSF_R0021 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YPDSF_R0092 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YPDSF_R0081 tRNA-His K14226 tRNA-His; tRNA His D YPDSF_R0002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YPDSF_R0077 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YPDSF_R0091 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0056 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0071 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0080 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0019 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0040 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0053 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0052 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0022 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0051 pseudogene K14229 tRNA-Lys; tRNA Lys D YPDSF_R0050 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0055 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0059 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0008 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0035 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0036 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0037 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0090 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0010 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D YPDSF_R0093 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D YPDSF_R0073 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YPDSF_R0079 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YPDSF_R0046 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YPDSF_R0027 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0067 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0048 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0016 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0098 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YPDSF_R0006 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YPDSF_R0047 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YPDSF_R0101 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YPDSF_R0083 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D YPDSF_R0015 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D YPDSF_R0100 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D YPDSF_R0041 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0043 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0042 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0013 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0014 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0102 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D YPDSF_2092 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YPDSF_2624 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D YPDSF_3056 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D YPDSF_1069 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D YPDSF_2283 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D YPDSF_0022 glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D YPDSF_0023 glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D YPDSF_0717 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D YPDSF_2316 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D YPDSF_0039 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D YPDSF_2711 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D YPDSF_1454 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D YPDSF_0163 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D YPDSF_3253 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D YPDSF_2643 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D YPDSF_3157 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D YPDSF_0628 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D YPDSF_1077 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D YPDSF_1643 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D YPDSF_2223 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D YPDSF_0721 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D YPDSF_0722 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D YPDSF_0777 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D YPDSF_0084 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:ypp03060] D YPDSF_0152 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D YPDSF_3751 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D YPDSF_3548 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D YPDSF_2824 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D YPDSF_2823 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D YPDSF_2825 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D YPDSF_3932 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D YPDSF_3078 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D YPDSF_3838 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D YPDSF_3079 hypothetical protein K13301 secM; secretion monitor D YPDSF_3064 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D YPDSF_R0062 ffs; SRP RNA K01983 ffs; SRP RNA D YPDSF_3431 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D YPDSF_3395 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D YPDSF_3394 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D YPDSF_3393 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D YPDSF_2656 sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE D YPDSF_1554 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D YPDSF_3156 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:ypp04122] D YPDSF_2241 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_0993 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_2501 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D YPDSF_3438 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D YPDSF_0124 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D YPDSF_0123 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D YPDSF_0122 hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D YPDSF_1527 sulfite reductase subunit protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D YPDSF_1810 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D YPDSF_2535 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D YPDSF_2538 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D YPDSF_2536 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein D YPDSF_1482 [molybdopterin synthase] sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D YPDSF_2537 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D YPDSF_3167 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D YPDSF_2808 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D YPDSF_3739 ThiS, thiamine-biosynthesis K03154 thiS; sulfur carrier protein D YPDSF_3738 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:ypp03018] D YPDSF_1705 hypothetical protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D YPDSF_1856 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D YPDSF_3487 DEAD-box helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D YPDSF_2983 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YPDSF_3299 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D YPDSF_3594 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D YPDSF_3297 cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D YPDSF_3450 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D YPDSF_3485 transcription termination factor Rho K03628 rho; transcription termination factor Rho D YPDSF_3826 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YPDSF_3163 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YPDSF_3622 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YPDSF_3601 RNA-binding protein Hfq K03666 hfq; host factor-I protein D YPDSF_2186 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D YPDSF_2957 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:ypp03030] D YPDSF_1341 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YPDSF_1630 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YPDSF_1653 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_4091 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_2759 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YPDSF_1841 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YPDSF_2645 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YPDSF_3252 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YPDSF_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YPDSF_3652 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D YPDSF_0428 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D YPDSF_3647 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YPDSF_1631 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D YPDSF_1654 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D YPDSF_3886 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YPDSF_3864 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_2097 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:ypp03410] D YPDSF_0896 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D YPDSF_1567 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D YPDSF_0562 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D YPDSF_3853 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D YPDSF_1290 glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D YPDSF_0021 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D YPDSF_0966 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D YPDSF_2391 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D YPDSF_3886 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YPDSF_0626 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D YPDSF_3864 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_2097 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:ypp03420] D YPDSF_1824 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D YPDSF_3648 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D YPDSF_2541 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D YPDSF_1260 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D YPDSF_3458 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D YPDSF_3886 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YPDSF_3864 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_2097 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:ypp03430] D YPDSF_3006 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D YPDSF_3603 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D YPDSF_1706 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D YPDSF_3458 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D YPDSF_1418 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D YPDSF_2217 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D YPDSF_2810 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D YPDSF_0626 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D YPDSF_3647 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YPDSF_1653 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_4091 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YPDSF_2759 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YPDSF_2645 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YPDSF_1841 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YPDSF_1630 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YPDSF_1341 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YPDSF_3252 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YPDSF_3864 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_2097 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_0081 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YPDSF_1035 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:ypp03440] D YPDSF_0626 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D YPDSF_3647 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YPDSF_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D YPDSF_1551 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D YPDSF_2757 DNA replication and repair protein RecR K06187 recR; recombination protein RecR D YPDSF_3054 RecA protein K03553 recA; recombination protein RecA D YPDSF_3886 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YPDSF_1065 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D YPDSF_1064 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D YPDSF_1066 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D YPDSF_3869 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D YPDSF_1695 DNA helicase/exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D YPDSF_1697 DNA helicase/exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D YPDSF_1694 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D YPDSF_1653 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_4091 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YPDSF_2759 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YPDSF_2645 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YPDSF_1841 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YPDSF_1630 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YPDSF_1341 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YPDSF_3252 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YPDSF_3797 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D YPDSF_2762 restart primosome assembly protein PriC K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:ypp03250] D YPDSF_0095 peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:ypp02010] D YPDSF_2122 thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D YPDSF_3825 exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D YPDSF_2121 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D YPDSF_2120 sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D YPDSF_2119 sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D YPDSF_0107 taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein D YPDSF_0109 taurine transport system permease protein K15552 tauC; taurine transport system permease protein D YPDSF_0108 taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D YPDSF_0231 aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D YPDSF_0233 aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein D YPDSF_0234 aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D YPDSF_3824 hypothetical protein K02020 modA; molybdate transport system substrate-binding protein D YPDSF_2552 molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein D YPDSF_2551 molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein D YPDSF_2550 molybdenum transport ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D YPDSF_2555 molybdenum transport ATP-binding protein modF K05776 modF; molybdate transport system ATP-binding protein D YPDSF_2066 iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein D YPDSF_2155 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein D YPDSF_2067 iron(III)-transport system permease K02011 afuB; iron(III) transport system permease protein D YPDSF_2154 binding protein-dependent transport system, inner-membrane component K02011 afuB; iron(III) transport system permease protein D YPDSF_2068 iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D YPDSF_2153 ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D YPDSF_3112 thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein D YPDSF_3113 thiamine transport system permease protein K02063 thiP; thiamine transport system permease protein D YPDSF_3114 thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D YPDSF_2366 putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein D YPDSF_2362 putrescine transport system permease protein K11074 potI; putrescine transport system permease protein D YPDSF_2363 putrescine transport system permease protein K11075 potH; putrescine transport system permease protein D YPDSF_2364 putrescine transport ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D YPDSF_1627 glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D YPDSF_1626 glycine betaine/L-proline transport system permease K02001 proW; glycine betaine/proline transport system permease protein D YPDSF_1625 glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D YPDSF_2500 hypothetical protein K05845 opuC; osmoprotectant transport system substrate-binding protein D YPDSF_2497 ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein D YPDSF_2499 ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein D YPDSF_2498 ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D YPDSF_0186 maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein D YPDSF_0185 maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein D YPDSF_0184 maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein D YPDSF_0188 maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_1893 mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_0655 sugar transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_1230 ABC-type sugar transport system, ATPase components K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_1231 binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_0394 transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_3279 sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_0656 sugar-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D YPDSF_0658 maltodextrin transport permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D YPDSF_0659 maltodextrin permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D YPDSF_1729 sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein D YPDSF_1726 ABC sugar transporter (permease) K10193 togM; oligogalacturonide transport system permease protein D YPDSF_1727 sugar ABC transporter (permease) K10194 togN; oligogalacturonide transport system permease protein D YPDSF_1728 sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein D YPDSF_0325 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D YPDSF_0324 membrane protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D YPDSF_0323 membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D YPDSF_0326 anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein D YPDSF_0322 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D YPDSF_0555 sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_1913 sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_3326 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_0557 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein D YPDSF_1910 sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein D YPDSF_3327 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein D YPDSF_0556 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YPDSF_3328 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YPDSF_3898 ribose permease K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D YPDSF_0879 L-arabinose-binding periplasmic protein precursor K10537 araF; L-arabinose transport system substrate-binding protein D YPDSF_0878 L-arabinose transport ATP-binding protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D YPDSF_3520 periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein D YPDSF_3517 sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein D YPDSF_3518 sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein D YPDSF_3519 sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D YPDSF_1470 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D YPDSF_1468 galactoside permease K10541 mglC; methyl-galactoside transport system permease protein D YPDSF_1469 galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D YPDSF_3779 sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein D YPDSF_3777 sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein D YPDSF_3778 sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D YPDSF_3042 sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein D YPDSF_3045 sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein D YPDSF_3044 sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein D YPDSF_0652 sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein D YPDSF_0653 sugar transport system permease K17206 xltB; putative xylitol transport system permease protein D YPDSF_0654 sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein D YPDSF_2673 sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein D YPDSF_2671 sugar transport system permease protein K17209 iatP; inositol transport system permease protein D YPDSF_2672 sugar transport ATP-binding protein K17210 iatA; inositol transport system ATP-binding protein D YPDSF_3413 glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D YPDSF_3412 sn-glycerol-3-phosphate transport system, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D YPDSF_3411 sn-glycerol-3-phosphate transport system, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D YPDSF_3410 sn-glycerol-3-phosphate transport, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D YPDSF_3918 phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein D YPDSF_2836 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D YPDSF_3919 phosphate transport system permease K02037 pstC; phosphate transport system permease protein D YPDSF_2185 phosphate transport system permease K02037 pstC; phosphate transport system permease protein D YPDSF_3920 phosphate transport system permease K02038 pstA; phosphate transport system permease protein D YPDSF_2184 phosphate transport system permease K02038 pstA; phosphate transport system permease protein D YPDSF_3921 phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D YPDSF_2183 phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D YPDSF_2512 substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein D YPDSF_2511 ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein D YPDSF_2510 ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein D YPDSF_2513 ABC transport ATP-binding subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D YPDSF_1985 histidine transport system permease protein HisM K10015 hisM; histidine transport system permease protein D YPDSF_1986 histidine transport system permease protein HisQ K10016 hisQ; histidine transport system permease protein D YPDSF_1984 histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_1987 histidine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein D YPDSF_1924 glutamine-binding periplasmic protein K10036 glnH; glutamine transport system substrate-binding protein D YPDSF_1925 glutamine transport system permease K10037 glnP; glutamine transport system permease protein D YPDSF_1926 glutamine transport ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_2359 hypothetical protein K09996 artJ; arginine transport system substrate-binding protein D YPDSF_2347 arginine-binding periplasmic protein 1 precursor K09997 artI; arginine transport system substrate-binding protein D YPDSF_2349 arginine transport system permease protein K09998 artM; arginine transport system permease protein D YPDSF_2348 arginine transport system permease protein K09999 artQ; arginine transport system permease protein D YPDSF_2346 arginine transport ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_2638 amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein D YPDSF_2640 glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein D YPDSF_2639 glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein D YPDSF_2641 glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_1278 amino-acid ABC transporter (permease) K10009 tcyB; L-cystine transport system permease protein D YPDSF_1277 amino-acid ABC transporter (ATP-binding protein) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_3425 branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D YPDSF_3424 high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D YPDSF_3423 high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D YPDSF_3422 high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D YPDSF_3421 high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D YPDSF_1640 lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D YPDSF_2379 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein D YPDSF_2377 ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein D YPDSF_1639 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein D YPDSF_1638 ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D YPDSF_2378 ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein D YPDSF_2508 substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein D YPDSF_2507 Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein D YPDSF_2506 Branched-chain amino acid transport system, permease component K11961 urtC; urea transport system permease protein D YPDSF_2505 ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein D YPDSF_2504 ABC transport ATP-binding subunit K11963 urtE; urea transport system ATP-binding protein D YPDSF_2542 amino acid transporter K11963 urtE; urea transport system ATP-binding protein D YPDSF_0954 periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein D YPDSF_0806 periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D YPDSF_0953 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein D YPDSF_0952 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein D YPDSF_0951 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D YPDSF_0950 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D YPDSF_3369 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D YPDSF_3368 dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein D YPDSF_3367 dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein D YPDSF_3366 dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein D YPDSF_3365 dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein D YPDSF_0788 peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein D YPDSF_0787 peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein D YPDSF_0786 peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein D YPDSF_0785 peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein D YPDSF_0784 peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein D YPDSF_2421 substrate-binding transport protein K13893 yejA; microcin C transport system substrate-binding protein D YPDSF_2422 ABC transporter integral membrane subunit K13894 yejB; microcin C transport system permease protein D YPDSF_2423 ABC transporter integral membrane subunit K13895 yejE; microcin C transport system permease protein D YPDSF_2424 ABC transporter ATP-binding subunit K13896 yejF; microcin C transport system ATP-binding protein D YPDSF_0485 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D YPDSF_1440 iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D YPDSF_1441 iron-siderophore transport system, transmembrane component K23186 fepD; iron-siderophore transport system permease protein D YPDSF_1442 iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein D YPDSF_1443 iron-siderophore transport system, ATP-binding component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D YPDSF_2966 ferrichrome-binding periplasmic protein precursor K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D YPDSF_2967 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein D YPDSF_2973 priplasmic metal binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D YPDSF_0725 putative vitamin B12 transport system permease protein K06073 btuC; vitamin B12 transport system permease protein D YPDSF_0727 vitamin B12 transport ATP-binding protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D YPDSF_1061 exported high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein D YPDSF_1063 high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein D YPDSF_1062 high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D YPDSF_0713 periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein D YPDSF_0711 chelated iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein D YPDSF_0710 chelated iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein D YPDSF_0712 ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein D YPDSF_3222 periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein D YPDSF_3220 ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein D YPDSF_3221 ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein D YPDSF_3219 ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein D YPDSF_1823 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D YPDSF_1821 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D YPDSF_1822 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D YPDSF_1089 ABC transporter, ATP-binding subunit K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D YPDSF_2023 heme exporter protein D K02196 ccmD; heme exporter protein D D YPDSF_2024 heme exporter protein C K02195 ccmC; heme exporter protein C D YPDSF_2025 heme exporter protein B K02194 ccmB; heme exporter protein B D YPDSF_2026 heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D YPDSF_3250 membrane protein K07091 lptF; lipopolysaccharide export system permease protein D YPDSF_3249 membrane protein K11720 lptG; lipopolysaccharide export system permease protein D YPDSF_0316 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D YPDSF_3429 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D YPDSF_3430 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D YPDSF_1212 lipoprotein inner membrane ABC-transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D YPDSF_1211 inner membrane ABC-transporter YbtQ K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D YPDSF_2300 transport ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D YPDSF_2780 ABC transporter (ATP-binding protein) K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D YPDSF_2779 ATP transporter (ATP-binding protein) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D YPDSF_3808 hypothetical protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D YPDSF_2666 ABC transport protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D YPDSF_3532 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D YPDSF_2323 transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D YPDSF_2322 transport ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D YPDSF_2331 ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D YPDSF_2108 ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:ypp02060] D YPDSF_2102 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D YPDSF_2101 PTS system, phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D YPDSF_2103 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YPDSF_1839 PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D YPDSF_2625 pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D YPDSF_0304 PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D YPDSF_0025 PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D YPDSF_1594 PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D YPDSF_1596 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D YPDSF_1595 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D YPDSF_1366 PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D YPDSF_1367 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component D YPDSF_1368 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component D YPDSF_0677 PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D YPDSF_0680 PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D YPDSF_0679 PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D YPDSF_0678 PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D YPDSF_1976 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D YPDSF_1977 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D YPDSF_1978 membrane protein K03475 ulaA; ascorbate PTS system EIIC component D YPDSF_2399 hypothetical protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D YPDSF_2397 PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D YPDSF_2398 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D YPDSF_1704 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D YPDSF_0310 phosphocarrier protein K08485 ptsO; phosphocarrier protein NPr D YPDSF_0312 nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:ypp03070] D YPDSF_0445 ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YPDSF_3964 type III secretion protein K03221 yscF; type III secretion protein F D YPDSF_3976 type III secretion protein K04056 yscO; type III secretion protein O D YPDSF_3975 type III secretion protein K04057 yscP; type III secretion protein P D YPDSF_3981 type III secretion protein K04059 yscX; type III secretion protein X D YPDSF_3967 type III secretion protein K03219 yscC; type III secretion protein C D YPDSF_3714 type III secretion protein K03219 yscC; type III secretion protein C D YPDSF_3978 type III secretion outer membrane protein PopN K04058 yscW; type III secretion protein W D YPDSF_3960 type III secretion lipoprotein K03222 yscJ; type III secretion protein J D YPDSF_3708 type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J D YPDSF_3700 type III secretion apparatus protein K03226 yscR; type III secretion protein R D YPDSF_3973 Yop secretion membrane protein K03226 yscR; type III secretion protein R D YPDSF_3972 type III secretion protein K03227 yscS; type III secretion protein S D YPDSF_3699 type III secretion apparatus protein K03227 yscS; type III secretion protein S D YPDSF_3971 type III secretion protein K03228 yscT; type III secretion protein T D YPDSF_3698 type III secretion apparatus protein K03228 yscT; type III secretion protein T D YPDSF_3970 type III secretion protein K03229 yscU; type III secretion protein U D YPDSF_3697 type III secretion apparatus protein K03229 yscU; type III secretion protein U D YPDSF_3705 secretion system apparatus protein K03230 yscV; type III secretion protein V D YPDSF_3983 membrane-bound Yop protein K03230 yscV; type III secretion protein V D YPDSF_3977 type III secretion system ATPase, FliI/YscN K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D YPDSF_3704 type III secretion system ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D YPDSF_3974 type III secretion protein K03225 yscQ; type III secretion protein Q D YPDSF_3701 type III secretion system apparatus protein K03225 yscQ; type III secretion protein Q D YPDSF_3958 type III secretion protein K03223 yscL; type III secretion protein L D YPDSF_0694 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D YPDSF_0704 lipoprotein K02465 gspS; general secretion pathway protein S D YPDSF_0693 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D YPDSF_0696 general protein secretion protein K02455 gspF; general secretion pathway protein F D YPDSF_0697 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D YPDSF_0698 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D YPDSF_0699 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D YPDSF_0700 general secretion pathway protein K K02460 gspK; general secretion pathway protein K D YPDSF_0701 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D YPDSF_0695 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D YPDSF_0703 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D YPDSF_2824 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D YPDSF_2823 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D YPDSF_3751 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D YPDSF_3548 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D YPDSF_0152 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D YPDSF_2825 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D YPDSF_3932 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D YPDSF_3078 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D YPDSF_3079 hypothetical protein K13301 secM; secretion monitor D YPDSF_3431 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D YPDSF_3838 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D YPDSF_3064 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D YPDSF_3395 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D YPDSF_3394 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D YPDSF_3393 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D YPDSF_2656 sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE D YPDSF_0180 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YPDSF_1079 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YPDSF_1078 hemolysin K11016 shlA; hemolysin D YPDSF_4024 conserved hypothetical protein K12341 yadA; adhesin YadA D YPDSF_2308 hypothetical protein K12342 yadB_C; adhesin YadB/C D YPDSF_2307 hypothetical protein K12342 yadB_C; adhesin YadB/C D YPDSF_0212 Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_1503 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_0546 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_2036 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_0220 Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_3127 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_0192 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_2045 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_0544 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_3132 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_1505 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_0202 lipoprotein K11906 vasD; type VI secretion system protein VasD D YPDSF_1488 hypothetical protein K11906 vasD; type VI secretion system protein VasD D YPDSF_2044 hypothetical protein K11906 vasD; type VI secretion system protein VasD D YPDSF_3122 lipoprotein K11906 vasD; type VI secretion system protein VasD D YPDSF_0209 hypothetical protein K11891 impL; type VI secretion system protein ImpL D YPDSF_1494 membrane protein K11891 impL; type VI secretion system protein ImpL D YPDSF_3119 membrane protein K11891 impL; type VI secretion system protein ImpL D YPDSF_0204 membrane protein K11892 impK; type VI secretion system protein ImpK D YPDSF_2039 OmpA family protein K11892 impK; type VI secretion system protein ImpK D YPDSF_0541 membrane protein K11892 impK; type VI secretion system protein ImpK D YPDSF_1508 membrane protein K11892 impK; type VI secretion system protein ImpK D YPDSF_3120 OmpA-family membrane protein K11892 impK; type VI secretion system protein ImpK D YPDSF_2042 hypothetical protein K11892 impK; type VI secretion system protein ImpK D YPDSF_1504 ATPase subunit of ATP-dependent protease K11907 vasG; type VI secretion system protein VasG D YPDSF_2054 Clp ATPase K11907 vasG; type VI secretion system protein VasG D YPDSF_0205 Clp ATPase K11907 vasG; type VI secretion system protein VasG D YPDSF_3128 Clp ATPase K11907 vasG; type VI secretion system protein VasG D YPDSF_0545 Clp ATPase K11907 vasG; type VI secretion system protein VasG B B 09132 Signal transduction C 02020 Two-component system [PATH:ypp02020] D YPDSF_2837 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D YPDSF_2838 phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D YPDSF_2116 two-component response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D YPDSF_0845 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D YPDSF_3918 phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein D YPDSF_2836 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D YPDSF_1815 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YPDSF_1814 response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D YPDSF_0064 osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D YPDSF_0063 transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D YPDSF_2470 outer membrane protein C, porin K09475 ompC; outer membrane pore protein C D YPDSF_2284 outer membrane porin C protein K09476 ompF; outer membrane pore protein F D YPDSF_3833 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D YPDSF_3832 two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR D YPDSF_0360 membrane protein K25864 mzrA; modulator protein MzrA D YPDSF_0835 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D YPDSF_0836 two-component regulatory system, response regulator protein K07661 rstA; two-component system, OmpR family, response regulator RstA D YPDSF_2976 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107] D YPDSF_0621 histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D YPDSF_0620 response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D YPDSF_2202 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D YPDSF_2203 two-component system response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR D YPDSF_2197 putative HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system D YPDSF_2198 AcrB/AcrD/AcrF family membrane protein K07788 mdtB; multidrug efflux pump D YPDSF_2201 membrane protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein D YPDSF_2148 multidrug efflux protein K18324 acrD; multidrug efflux pump D YPDSF_3557 two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D YPDSF_3556 two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR D YPDSF_0728 conserved hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D YPDSF_1123 two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D YPDSF_1122 transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D YPDSF_1785 hypothetical protein K02403 flhD; flagellar transcriptional activator FlhD D YPDSF_1784 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC D YPDSF_1284 thermoregulated motility protein K02406 fliC; flagellin D YPDSF_0520 flagellin K02406 fliC; flagellin D YPDSF_0521 flagellin K02406 fliC; flagellin D YPDSF_1283 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YPDSF_1783 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YPDSF_1585 two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D YPDSF_1580 potassium-transporting ATPase A chain K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D YPDSF_1581 potassium-transporting ATPase B chain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D YPDSF_1582 potassium-transporting ATPase C chain K01548 kdpC; potassium-transporting ATPase KdpC subunit D YPDSF_1579 K+-transporting ATPase, F subunit K01545 kdpF; potassium-transporting ATPase KdpF subunit D YPDSF_0342 PAS/PAC sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D YPDSF_3176 aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D YPDSF_0001 chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D YPDSF_3072 hypothetical protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D YPDSF_1463 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D YPDSF_1163 nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D YPDSF_2146 nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D YPDSF_3614 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YPDSF_3615 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YPDSF_3616 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YPDSF_3617 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D D YPDSF_3372 regulatory protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D YPDSF_3373 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D YPDSF_3374 two-component system response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D YPDSF_1400 GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR D YPDSF_1641 lipoprotein K06080 rcsF; RcsF protein D YPDSF_2476 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D YPDSF_2473 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D YPDSF_2474 two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D YPDSF_2475 two component response regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D YPDSF_2977 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D YPDSF_1261 response regulator protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D YPDSF_3057 carbon storage regulator K03563 csrA; carbon storage regulator D YPDSF_1200 signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D YPDSF_1199 two-component response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D YPDSF_1749 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1753 membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1750 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1748 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_3493 fimbrial chaperone K07346 fimC; fimbrial chaperone protein D YPDSF_1751 chaperone protein K07346 fimC; fimbrial chaperone protein D YPDSF_1737 chaperone protein K07346 fimC; fimbrial chaperone protein D YPDSF_3494 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_2392 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein D YPDSF_1739 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_1752 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_4097 F1 capsule anchoring protein K07347 fimD; outer membrane usher protein D YPDSF_1203 fimbrial usher protein K07347 fimD; outer membrane usher protein D YPDSF_2051 hypothetical protein K07347 fimD; outer membrane usher protein D YPDSF_0478 membrane protein K02279 cpaB; pilus assembly protein CpaB D YPDSF_0477 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D YPDSF_0475 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D YPDSF_0474 type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D YPDSF_0473 membrane protein K12510 tadB; tight adherence protein B D YPDSF_0472 hypothetical protein K12511 tadC; tight adherence protein C D YPDSF_1671 (protein-PII) uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D YPDSF_2256 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D YPDSF_3881 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D YPDSF_3882 nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D YPDSF_3880 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YPDSF_3358 C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D YPDSF_0315 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D YPDSF_2260 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D YPDSF_2258 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D YPDSF_R0045 tke1 RNA K15841 glmY; small regulatory RNA GlmY D YPDSF_1770 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D YPDSF_2466 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D YPDSF_1927 chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein D YPDSF_1772 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YPDSF_1719 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YPDSF_0031 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D YPDSF_1788 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D YPDSF_1789 methyl-accepting chemotaxis protein III (MCP-III K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D YPDSF_1771 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D YPDSF_1804 methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D YPDSF_1780 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D YPDSF_1781 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YPDSF_1768 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D YPDSF_1769 protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D YPDSF_3715 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA D YPDSF_3716 two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB D YPDSF_0496 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC D YPDSF_2641 glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_2640 glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein D YPDSF_2639 glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein D YPDSF_2638 amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein D YPDSF_0100 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YPDSF_0565 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YPDSF_1184 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YPDSF_2579 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D YPDSF_2578 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D YPDSF_0886 hypothetical protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D YPDSF_0884 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system D YPDSF_0882 toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D YPDSF_0445 ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YPDSF_3482 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D YPDSF_3481 UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D YPDSF_3208 pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D YPDSF_0504 flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM D YPDSF_1327 negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D YPDSF_0554 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:ypp02024] D YPDSF_3061 autoinducer-2 production protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D YPDSF_3601 RNA-binding protein Hfq K03666 hfq; host factor-I protein D YPDSF_0925 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D YPDSF_0926 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D YPDSF_3074 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YPDSF_0738 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YPDSF_2260 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D YPDSF_2258 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D YPDSF_1785 hypothetical protein K02403 flhD; flagellar transcriptional activator FlhD D YPDSF_1784 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC D YPDSF_1585 two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D YPDSF_1400 GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR D YPDSF_3222 periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein D YPDSF_3220 ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein D YPDSF_3221 ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein D YPDSF_3219 ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein D YPDSF_3216 carbohydrate kinase K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189] D YPDSF_3217 transcriptional repressor K11531 lsrR; lsr operon transcriptional repressor D YPDSF_3223 aldolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245] D YPDSF_3224 hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32] D YPDSF_1939 hypothetical protein K20268 rhiA; rhizosphere induced protein D YPDSF_2193 transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D YPDSF_1094 hypothetical protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D YPDSF_2191 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D YPDSF_1093 binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D YPDSF_1092 binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D YPDSF_2192 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D YPDSF_2196 putative ABC-transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D YPDSF_1091 hypothetical protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D YPDSF_3425 branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D YPDSF_3424 high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D YPDSF_3423 high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D YPDSF_3422 high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D YPDSF_3421 high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D YPDSF_1871 N-acylhomoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D YPDSF_0534 N-acylhomoserine lactone synthase YspI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D YPDSF_1872 quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPDSF_0533 quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPDSF_3104 AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_1047 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_0100 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YPDSF_3656 zinc uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D YPDSF_0912 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D YPDSF_2818 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D YPDSF_3291 outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D YPDSF_0954 periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein D YPDSF_0806 periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D YPDSF_0953 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein D YPDSF_0952 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein D YPDSF_0951 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D YPDSF_0950 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D YPDSF_3258 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D YPDSF_1616 solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D YPDSF_3260 transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D YPDSF_1615 membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D YPDSF_3261 transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D YPDSF_1614 binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D YPDSF_3262 ABC transporter transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D YPDSF_1613 transport ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D YPDSF_3263 ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D YPDSF_1612 transport ATPase K02032 ddpF; peptide/nickel transport system ATP-binding protein D YPDSF_3932 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D YPDSF_3751 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D YPDSF_3548 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D YPDSF_0152 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D YPDSF_2825 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D YPDSF_3078 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D YPDSF_3431 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D YPDSF_3838 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D YPDSF_3064 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:ypp02030] D YPDSF_2466 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D YPDSF_1927 chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein D YPDSF_1772 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YPDSF_1719 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YPDSF_0031 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D YPDSF_1788 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D YPDSF_1789 methyl-accepting chemotaxis protein III (MCP-III K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D YPDSF_1771 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D YPDSF_1804 methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D YPDSF_0186 maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein D YPDSF_0555 sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_1913 sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_3326 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_1470 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D YPDSF_3369 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D YPDSF_1781 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YPDSF_1780 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D YPDSF_1768 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D YPDSF_1767 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D YPDSF_1769 protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D YPDSF_1770 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D YPDSF_1295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D YPDSF_0499 putative flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D YPDSF_1301 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D YPDSF_0495 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D YPDSF_1302 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D YPDSF_0494 flagellar switch protein K02417 fliN; flagellar motor switch protein FliN D YPDSF_1783 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YPDSF_1782 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:ypp02040] D YPDSF_1293 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D YPDSF_0497 flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE D YPDSF_1294 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YPDSF_0498 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YPDSF_1295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D YPDSF_0499 putative flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D YPDSF_1296 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YPDSF_0500 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D YPDSF_1297 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YPDSF_0501 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YPDSF_1298 flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D YPDSF_1299 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D YPDSF_1300 flagellar protein FliL K02415 fliL; flagellar protein FliL D YPDSF_1301 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D YPDSF_0495 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D YPDSF_1302 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D YPDSF_0494 flagellar switch protein K02417 fliN; flagellar motor switch protein FliN D YPDSF_1303 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D YPDSF_1304 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D YPDSF_0493 flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP D YPDSF_1305 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D YPDSF_0492 flagellar assembly protein K02420 fliQ; flagellar biosynthesis protein FliQ D YPDSF_1306 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YPDSF_0491 flagellar assembly protein K02421 fliR; flagellar biosynthesis protein FliR D YPDSF_1332 flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE D YPDSF_1333 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D YPDSF_0489 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA D YPDSF_1334 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YPDSF_0490 flagellar assembly protein K02401 flhB; flagellar biosynthesis protein FlhB D YPDSF_1326 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D YPDSF_0505 flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D YPDSF_1325 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D YPDSF_0506 flagellar basal-body rod protein K02387 flgB; flagellar basal-body rod protein FlgB D YPDSF_1324 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D YPDSF_0507 flagellar basal-body rod protein K02388 flgC; flagellar basal-body rod protein FlgC D YPDSF_0508 basal-body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD D YPDSF_1323 basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D YPDSF_0509 flagellar hook protein K02390 flgE; flagellar hook protein FlgE D YPDSF_1322 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D YPDSF_1321 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D YPDSF_0510 hypothetical protein K02391 flgF; flagellar basal-body rod protein FlgF D YPDSF_0511 flagellar basal-body rod protein K02392 flgG; flagellar basal-body rod protein FlgG D YPDSF_1320 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D YPDSF_1319 flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH D YPDSF_0512 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D YPDSF_1318 flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI D YPDSF_0513 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D YPDSF_1317 flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D YPDSF_0514 flagellar protein K02395 flgJ; peptidoglycan hydrolase FlgJ D YPDSF_1316 flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1 D YPDSF_0515 flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1 D YPDSF_1315 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D YPDSF_0516 flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL D YPDSF_1284 thermoregulated motility protein K02406 fliC; flagellin D YPDSF_0520 flagellin K02406 fliC; flagellin D YPDSF_0521 flagellin K02406 fliC; flagellin D YPDSF_1285 flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D YPDSF_1286 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D YPDSF_1287 FliT K02423 fliT; flagellar protein FliT D YPDSF_1783 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YPDSF_1782 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YPDSF_0504 flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM D YPDSF_1327 negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM D YPDSF_1328 flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN D YPDSF_0503 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN D YPDSF_1282 alternative sigma factor regulatory protein K02425 fliZ; regulator of sigma S factor FliZ D YPDSF_0427 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D YPDSF_1785 hypothetical protein K02403 flhD; flagellar transcriptional activator FlhD D YPDSF_1784 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC D YPDSF_0315 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D YPDSF_0496 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC D YPDSF_1283 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D YPDSF_2983 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D YPDSF_0177 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection [PATH:ypp05135] D YPDSF_3309 invasin K13735 yeeJ; adhesin/invasin D YPDSF_1331 invasin K13735 yeeJ; adhesin/invasin D YPDSF_4024 conserved hypothetical protein K12341 yadA; adhesin YadA D YPDSF_3944 targeted effector protein kinase K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1] D YPDSF_4001 cytotoxic effector protein K08599 yopT; YopT peptidase [EC:3.4.22.-] D YPDSF_4013 outer membrane virulence protein K23473 yopE; outer membrane virulence protein YopE D YPDSF_3949 protein-tyrosine phosphatase Yop effector K23474 yopH; tyrosine-protein phosphatase YopH [EC:3.1.3.48] D YPDSF_3988 Yop targeting protein K23475 yopB; transloator D YPDSF_3989 Yop negative regulation/targeting component K23476 yopD; transloator D YPDSF_3996 targeted effector protein K23478 yopM; outer membrane protein YopM D YPDSF_3945 targeted effector protein K08598 yopJ; YopJ protease family C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells D YPDSF_3309 invasin K13735 yeeJ; adhesin/invasin D YPDSF_1331 invasin K13735 yeeJ; adhesin/invasin B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:ypp01501] D YPDSF_2284 outer membrane porin C protein K09476 ompF; outer membrane pore protein F D YPDSF_2470 outer membrane protein C, porin K09475 ompC; outer membrane pore protein C D YPDSF_2797 Beta-lactamase induction signal transducer AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D YPDSF_1832 beta-N-acetylhexosaminidase. Glycosyl Hydrolase family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D YPDSF_0954 periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein D YPDSF_0806 periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D YPDSF_0953 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein D YPDSF_0952 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein D YPDSF_0951 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D YPDSF_0950 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D YPDSF_3293 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_2767 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_3292 multidrug efflux protein K18138 acrB; multidrug efflux pump D YPDSF_2768 multidrug efflux protein K18138 acrB; multidrug efflux pump D YPDSF_3291 outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D YPDSF_0445 ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YPDSF_0071 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D YPDSF_2649 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D YPDSF_3093 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:ypp01502] D YPDSF_3085 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D YPDSF_3651 alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1] D YPDSF_3091 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D YPDSF_3090 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D YPDSF_3087 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ypp01503] D YPDSF_1815 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YPDSF_1814 response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D YPDSF_3375 phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D YPDSF_1378 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D YPDSF_0728 conserved hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D YPDSF_0729 glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D YPDSF_0730 formyl transferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D YPDSF_0731 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D YPDSF_0732 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D YPDSF_0733 membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D YPDSF_0734 membrane protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF D YPDSF_3557 two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D YPDSF_3556 two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR D YPDSF_0769 membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D YPDSF_0788 peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein D YPDSF_0787 peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein D YPDSF_0786 peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein D YPDSF_0785 peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein D YPDSF_0784 peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein D YPDSF_3337 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40] D YPDSF_1644 copper homeostasis lipoprotein K06079 cutF; copper homeostasis protein (lipoprotein) D YPDSF_3833 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D YPDSF_3832 two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR D YPDSF_1689 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YPDSF_3604 N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YPDSF_0750 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS D YPDSF_2976 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107] D YPDSF_3887 secreted thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D YPDSF_0095 peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D YPDSF_3293 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_2767 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_3292 multidrug efflux protein K18138 acrB; multidrug efflux pump D YPDSF_2768 multidrug efflux protein K18138 acrB; multidrug efflux pump D YPDSF_0445 ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YPDSF_1656 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:ypp01000] C 01001 Protein kinases [BR:ypp01001] D YPDSF_1389 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D YPDSF_3944 targeted effector protein kinase K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1] D YPDSF_2837 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D YPDSF_1815 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YPDSF_0064 osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D YPDSF_0835 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D YPDSF_3833 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D YPDSF_0621 histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D YPDSF_2202 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D YPDSF_3557 two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D YPDSF_1123 two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D YPDSF_0342 PAS/PAC sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D YPDSF_2105 two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D YPDSF_1163 nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D YPDSF_3373 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D YPDSF_2473 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D YPDSF_2474 two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D YPDSF_2476 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D YPDSF_2977 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D YPDSF_1200 signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D YPDSF_3308 membrane protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D YPDSF_3881 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D YPDSF_2260 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D YPDSF_1781 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YPDSF_3715 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA C 01009 Protein phosphatases and associated proteins [BR:ypp01009] D YPDSF_3826 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YPDSF_2755 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG D YPDSF_3192 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:ypp01002] D YPDSF_3156 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D YPDSF_0703 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D YPDSF_0479 membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D YPDSF_1568 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D YPDSF_2215 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D YPDSF_3808 hypothetical protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D YPDSF_2419 lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D YPDSF_0762 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D YPDSF_0735 lipoprotein K13695 nlpC; probable lipoprotein NlpC D YPDSF_1989 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D YPDSF_0340 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D YPDSF_3917 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D YPDSF_2630 asparagine synthase (glutamine-hydrolysing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D YPDSF_3945 targeted effector protein K08598 yopJ; YopJ protease family D YPDSF_2807 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme K03152 thiJ; protein deglycase [EC:3.5.1.124] D YPDSF_4001 cytotoxic effector protein K08599 yopT; YopT peptidase [EC:3.4.22.-] D YPDSF_0750 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS D YPDSF_2288 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D YPDSF_0535 membrane protein K07052 K07052; CAAX protease family protein D YPDSF_2281 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D YPDSF_3339 oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D YPDSF_3337 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40] D YPDSF_0283 phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D YPDSF_1696 protease III precursor K01407 ptrA; protease III [EC:3.4.24.55] D YPDSF_3357 insulinase family protease K07263 pqqL; zinc protease [EC:3.4.24.-] D YPDSF_3251 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D YPDSF_2234 peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D YPDSF_2158 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D YPDSF_1817 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D YPDSF_2857 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D YPDSF_2885 amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D YPDSF_1060 M23/M37 peptidase-family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D YPDSF_1670 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D YPDSF_3385 proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D YPDSF_0604 proline-specific aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D YPDSF_0834 carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D YPDSF_3551 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D YPDSF_1742 heat shock protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D YPDSF_0588 lipoprotein K07387 K07387; metalloprotease [EC:3.4.24.-] D YPDSF_2173 hypothetical protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D YPDSF_1661 membrane protein K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D YPDSF_2008 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D YPDSF_1391 hypothetical protein K09933 mtfA; MtfA peptidase D YPDSF_0826 pepetidase K04775 ydgD; protease YdgD [EC:3.4.21.-] D YPDSF_2976 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107] D YPDSF_0331 protease K04772 degQ; serine protease DegQ [EC:3.4.21.-] D YPDSF_0329 protease K04691 hhoB; serine protease DegS [EC:3.4.21.-] D YPDSF_1343 oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D YPDSF_2652 penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YPDSF_2376 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YPDSF_2520 penicillin-binding protein 7 precursor K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D YPDSF_2469 penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D YPDSF_3555 penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D YPDSF_2793 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D YPDSF_2791 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D YPDSF_1542 Lon protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-] D YPDSF_3657 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D YPDSF_1554 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D YPDSF_1342 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D YPDSF_1743 tail-specific protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D YPDSF_0972 protease IV K04773 sppA; protease IV [EC:3.4.21.-] D YPDSF_0919 peptidase family U7 protein K04774 sohB; serine protease SohB [EC:3.4.21.-] D YPDSF_0049 membrane protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D YPDSF_3800 heat shock protein K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D YPDSF_2831 Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D YPDSF_2205 protease K08303 prtC; U32 family peptidase [EC:3.4.-.-] D YPDSF_3290 hypothetical protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D YPDSF_3289 protease K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D YPDSF_0299 Putative modulator of DNA gyrase K03592 pmbA; PmbA protein D YPDSF_0279 modulator of DNA gyrase K03568 tldD; TldD protein D YPDSF_2482 ecotin precursor K08276 eco; ecotin D YPDSF_2679 membrane protein K06894 yfhM; alpha-2-macroglobulin D YPDSF_3598 membrane protein K04087 hflC; modulator of FtsH protease HflC D YPDSF_3599 membrane protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:ypp01003] D YPDSF_1140 glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D YPDSF_3304 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D YPDSF_0345 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D YPDSF_2680 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D YPDSF_2963 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D YPDSF_0071 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D YPDSF_3473 UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D YPDSF_3475 hypothetical protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D YPDSF_3484 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D YPDSF_1169 haemin storage system, HmsR protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:ypp01005] D YPDSF_1656 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D YPDSF_1655 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D YPDSF_3081 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D YPDSF_1658 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D YPDSF_2713 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D YPDSF_2299 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D YPDSF_1059 lipid A biosynthesis acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D YPDSF_0239 membrane protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D YPDSF_2418 lipid-A kinase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D YPDSF_3850 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D YPDSF_0732 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D YPDSF_1378 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D YPDSF_0769 membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D YPDSF_3375 phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D YPDSF_1097 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D YPDSF_2295 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D YPDSF_0319 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D YPDSF_0320 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D YPDSF_3849 lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D YPDSF_3851 lipopolysaccharide core biosynthesis glycosyl transferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-] D YPDSF_3848 ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D YPDSF_3215 lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D YPDSF_2871 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D YPDSF_1637 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D YPDSF_0438 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D YPDSF_3847 ADP-glyceromanno-heptose 6-epimerase precursor K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D YPDSF_2745 hypothetical protein K24673 wbyI; glycosyltransferase [EC:2.4.1.-] D YPDSF_2744 mannosyltransferase K13000 wbyJ; mannosyltransferase [EC:2.4.1.-] D YPDSF_2742 mannosyltransferase K13001 wbyK; mannosyltransferase [EC:2.4.1.-] D YPDSF_2737 glycosyltransferase K13002 wbyL; glycosyltransferase [EC:2.4.1.-] D YPDSF_3474 4-alpha-L-fucosyltransferase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27] D YPDSF_3484 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ypp01011] D YPDSF_0328 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D YPDSF_3381 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D YPDSF_3086 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D YPDSF_3089 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D YPDSF_3092 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D YPDSF_3085 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D YPDSF_3651 alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1] D YPDSF_3521 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D YPDSF_3090 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D YPDSF_3087 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D YPDSF_0433 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D YPDSF_2372 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D YPDSF_1080 membrane protein K03980 murJ; putative peptidoglycan lipid II flippase D YPDSF_0071 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D YPDSF_2963 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D YPDSF_2680 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D YPDSF_2649 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D YPDSF_3093 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D YPDSF_2652 penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YPDSF_2376 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YPDSF_3555 penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D YPDSF_2469 penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D YPDSF_2520 penicillin-binding protein 7 precursor K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D YPDSF_0345 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D YPDSF_0750 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS D YPDSF_2288 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D YPDSF_2008 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D YPDSF_0762 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D YPDSF_2419 lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D YPDSF_1060 M23/M37 peptidase-family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D YPDSF_0283 phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D YPDSF_3182 soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D YPDSF_1688 membrane-bound lytic murein transglycosylase A precursor K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D YPDSF_2065 membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D YPDSF_1041 lipoprotein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D YPDSF_0560 membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D YPDSF_1634 membrane-bound lytic murein transglycosylase D precursor K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D YPDSF_0714 membrane-bound lytic murein transglycosylase K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29] D YPDSF_2265 membrane protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D YPDSF_1843 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D YPDSF_2651 rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D YPDSF_1689 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YPDSF_3604 N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YPDSF_1733 N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YPDSF_2931 signalling protein in beta-lactamase regulation K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:ypp01004] D YPDSF_1849 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YPDSF_1512 acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YPDSF_1850 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D YPDSF_1146 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D YPDSF_1145 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D YPDSF_2003 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YPDSF_1519 beta-ketoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YPDSF_1846 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YPDSF_1547 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YPDSF_1848 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YPDSF_1518 beta-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YPDSF_1543 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D YPDSF_1657 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YPDSF_1520 putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YPDSF_3930 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D YPDSF_2718 acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D YPDSF_2776 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D YPDSF_0939 acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D YPDSF_2786 hypothetical protein K12500 tesC; thioesterase III [EC:3.1.2.-] D YPDSF_1215 yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase D YPDSF_1214 yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase D YPDSF_3718 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YPDSF_3104 AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_1047 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_3659 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D YPDSF_1851 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D YPDSF_0431 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D YPDSF_0455 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:ypp01008] D YPDSF_1396 phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D YPDSF_1215 yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase D YPDSF_1214 yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase D YPDSF_1218 yersiniabactin siderophore biosynthetic protein K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D YPDSF_1216 yersiniabactin biosynthetic protein YbtU K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component D YPDSF_1217 yersiniabactin biosynthetic protein YbtT K05374 irp4; yersiniabactin synthetase, thioesterase component C 01006 Prenyltransferases [BR:ypp01006] D YPDSF_2811 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D YPDSF_3562 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D YPDSF_1663 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D YPDSF_3602 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D YPDSF_3802 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D YPDSF_3660 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D YPDSF_2803 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:ypp01007] D YPDSF_2092 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YPDSF_2624 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D YPDSF_2958 glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D YPDSF_0777 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D YPDSF_0084 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D YPDSF_2711 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D YPDSF_1077 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D YPDSF_1454 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D YPDSF_3157 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D YPDSF_3253 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D YPDSF_2643 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D YPDSF_0628 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D YPDSF_1069 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D YPDSF_2283 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D YPDSF_2223 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D YPDSF_0022 glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D YPDSF_0023 glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D YPDSF_2316 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D YPDSF_1643 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D YPDSF_0717 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D YPDSF_3056 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D YPDSF_0721 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D YPDSF_0722 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D YPDSF_2285 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YPDSF_0015 valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D YPDSF_1967 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D YPDSF_2082 aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D YPDSF_3650 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D YPDSF_2883 aspartate aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88] D YPDSF_1429 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YPDSF_3846 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D YPDSF_2545 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D YPDSF_2113 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YPDSF_0098 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D YPDSF_1161 succinylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D YPDSF_2194 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YPDSF_2547 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D YPDSF_2968 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D YPDSF_3511 branched chain amino acid aminotransferase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YPDSF_2306 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D YPDSF_2889 hypothetical protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112] D YPDSF_0728 conserved hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D YPDSF_3477 lipopolysaccharide biosynthesis protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:ypp00194] D YPDSF_3915 ATP synthase epsilon subunit protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D YPDSF_3914 ATP synthase beta subunit protein K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D YPDSF_3913 ATP synthase gamma subunit protein K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D YPDSF_3912 ATP synthase alpha subunit protein K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D YPDSF_3911 ATP synthase delta subunit protein K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D YPDSF_3910 ATP synthase subunit B protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D YPDSF_3909 ATP synthase subunit C protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D YPDSF_3908 ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D YPDSF_3907 ATP synthase protein I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:ypp03000] D YPDSF_0875 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D YPDSF_3639 transcriptional regulator, AraC family K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D YPDSF_3640 transcriptional regulator, AraC family K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D YPDSF_1593 cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D YPDSF_1213 transcriptional regulator, AraC family K05372 ybtA; AraC family transcriptional regulator D YPDSF_3178 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D YPDSF_3969 thermoregulatory protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D YPDSF_3834 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D YPDSF_1684 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D YPDSF_3502 LysR-family transcriptional regulatory protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D YPDSF_3406 lysR-family transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D YPDSF_3160 transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D YPDSF_3527 oxidative stress transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D YPDSF_0597 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D YPDSF_3105 LysR-family transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D YPDSF_0915 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D YPDSF_1908 putative LlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D YPDSF_3819 transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D YPDSF_0290 lysR-family transcriptional regulatory protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D YPDSF_3516 LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D YPDSF_2374 deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D YPDSF_0048 glycerol-3-phosphate repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D YPDSF_0683 DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D YPDSF_3033 deoR-family regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D YPDSF_0665 transcriptional regulator, LacI family K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D YPDSF_0396 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_1392 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_0861 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_1712 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_1909 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_3776 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPDSF_3798 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D YPDSF_3099 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D YPDSF_0305 transcriptional regulator, LacI family K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D YPDSF_0760 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D YPDSF_3320 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D YPDSF_1947 transcriptional regulator, LacI family K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator D YPDSF_3266 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D YPDSF_1150 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D YPDSF_1236 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D YPDSF_0988 transcriptional regulator, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D YPDSF_2934 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D YPDSF_2415 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D YPDSF_0363 transcriptional regulator, GntR family K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D YPDSF_2195 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D YPDSF_2530 TetR-family regulatory protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D YPDSF_2766 tetR-family transcriptional regulatory protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D YPDSF_3859 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D YPDSF_0768 TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D YPDSF_3525 TetR-family transcriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D YPDSF_3903 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D YPDSF_2320 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPDSF_1796 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPDSF_2781 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D YPDSF_1872 quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPDSF_0533 quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPDSF_0051 maltose regulon positive regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D YPDSF_0772 MarR-family transcriptional regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D YPDSF_2902 MarR-family transcriptional regulatory protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D YPDSF_2723 regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D YPDSF_0158 MerR-family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D YPDSF_2620 ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D YPDSF_3656 zinc uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D YPDSF_0176 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D YPDSF_1734 IclR-family transcriptional regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D YPDSF_0100 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YPDSF_0843 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D YPDSF_2242 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D YPDSF_3595 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D YPDSF_3015 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D YPDSF_1057 hex regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D YPDSF_3380 bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D YPDSF_0260 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YPDSF_3181 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D YPDSF_2681 DNA-binding protein K07724 ner; Ner family transcriptional regulator D YPDSF_3564 DNA-binding protein K07724 ner; Ner family transcriptional regulator D YPDSF_3111 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator D YPDSF_3190 transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D YPDSF_0634 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D YPDSF_3343 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator D YPDSF_2554 molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein D YPDSF_3770 conserved hypothetical protein K07726 K07726; putative transcriptional regulator D YPDSF_3793 transcriptional repressor protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D YPDSF_1274 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D YPDSF_2795 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D YPDSF_4141 partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_4149 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_4009 plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_3390 regulatory protein K05785 rfaH; transcriptional antiterminator RfaH D YPDSF_3566 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D YPDSF_2628 N-acetylglucosamine regulatory protein K02565 nagC; N-acetylglucosamine repressor D YPDSF_0865 ROK family transcriptional regulatory protein K15545 mlc; transcriptional regulator of PTS gene D YPDSF_0027 mannitol repressor, MtlR K02562 mtlR; mannitol operon repressor D YPDSF_0799 transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D YPDSF_2168 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D YPDSF_0790 psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D YPDSF_0793 phage shock protein C K03973 pspC; phage shock protein C D YPDSF_3217 transcriptional repressor K11531 lsrR; lsr operon transcriptional repressor D YPDSF_0302 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D YPDSF_0637 regulatory protein K07733 alpA; prophage regulatory protein D YPDSF_1221 transcriptional regulator K07733 alpA; prophage regulatory protein D YPDSF_2604 transcriptional regulator K07733 alpA; prophage regulatory protein D YPDSF_0579 hypothetical protein K07735 algH; putative transcriptional regulator D YPDSF_2959 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D YPDSF_2819 hypothetical protein K07738 nrdR; transcriptional repressor NrdR D YPDSF_2852 curlin genes regulatory protein K11926 crl; sigma factor-binding protein Crl D YPDSF_3096 hypothetical protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:ypp03021] D YPDSF_0156 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D YPDSF_3745 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D YPDSF_3744 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D YPDSF_3866 DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D YPDSF_0427 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D YPDSF_3005 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D YPDSF_1560 RNA polymerase sigma E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D YPDSF_3428 RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor D YPDSF_0315 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D YPDSF_1283 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YPDSF_3117 RNA polymerase associated helicase K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D YPDSF_3546 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D YPDSF_2816 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D YPDSF_3750 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D YPDSF_0336 stringent starvation protein A K03599 sspA; stringent starvation protein A D YPDSF_0337 stringent starvation protein B K03600 sspB; stringent starvation protein B D YPDSF_1559 sigma E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA D YPDSF_1558 sigma E factor regulatory protein K03598 rseB; sigma-E factor negative regulatory protein RseB D YPDSF_1557 sigma E factor regulatory protein K03803 rseC; sigma-E factor negative regulatory protein RseC D YPDSF_2959 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D YPDSF_3554 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D YPDSF_0062 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D YPDSF_3485 transcription termination factor Rho K03628 rho; transcription termination factor Rho D YPDSF_1648 hypothetical protein K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:ypp03019] D YPDSF_1856 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D YPDSF_0276 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D YPDSF_1553 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D YPDSF_3594 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D YPDSF_3608 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D YPDSF_3487 DEAD-box helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D YPDSF_3297 cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D YPDSF_3450 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D YPDSF_2983 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YPDSF_3299 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D YPDSF_3485 transcription termination factor Rho K03628 rho; transcription termination factor Rho D YPDSF_3826 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YPDSF_3163 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YPDSF_3622 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YPDSF_3601 RNA-binding protein Hfq K03666 hfq; host factor-I protein D YPDSF_2186 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D YPDSF_2957 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D YPDSF_1705 hypothetical protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D YPDSF_3057 carbon storage regulator K03563 csrA; carbon storage regulator D YPDSF_0271 diguanylate cyclase/phosphodiesterase K18765 csrD; RNase E specificity factor CsrD D YPDSF_3803 S-adenosylmethionine:2-demethylmenaquinone methyltransferase K02553 rraA; regulator of ribonuclease activity A D YPDSF_3255 hypothetical protein K09893 rraB; regulator of ribonuclease activity B D YPDSF_0311 hypothetical protein K06958 rapZ; RNase adapter protein RapZ D YPDSF_0824 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D YPDSF_2962 ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D YPDSF_R0045 tke1 RNA K15841 glmY; small regulatory RNA GlmY D YPDSF_R0034 regulatory RNA csrB K18515 csrB; small regulatory RNA CsrB D YPDSF_R0103 regulatory RNA CsrC K18516 csrC; small regulatory RNA CsrC D YPDSF_R0104 Spot 42 RNA K18527 spf; small regulatory RNA Spot 42 C 03041 Spliceosome C 03011 Ribosome [BR:ypp03011] D YPDSF_2303 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1 D YPDSF_1669 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D YPDSF_0139 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D YPDSF_0155 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D YPDSF_0150 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D YPDSF_3587 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D YPDSF_0126 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D YPDSF_0147 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D YPDSF_0335 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D YPDSF_0132 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D YPDSF_0154 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D YPDSF_0125 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D YPDSF_0153 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D YPDSF_0146 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D YPDSF_3542 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D YPDSF_3066 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D YPDSF_0142 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D YPDSF_3586 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D YPDSF_0137 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D YPDSF_3159 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D YPDSF_0429 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D YPDSF_3748 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D YPDSF_0136 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D YPDSF_0133 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D YPDSF_0134 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D YPDSF_0145 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D YPDSF_0148 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D YPDSF_3585 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D YPDSF_3747 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D YPDSF_3749 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D YPDSF_3746 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D YPDSF_0334 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D YPDSF_0143 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D YPDSF_0151 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D YPDSF_0140 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D YPDSF_0157 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D YPDSF_0149 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D YPDSF_3069 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D YPDSF_0720 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D YPDSF_3561 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D YPDSF_0138 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D YPDSF_0135 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D YPDSF_0144 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D YPDSF_3560 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D YPDSF_3855 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D YPDSF_0141 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D YPDSF_3796 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D YPDSF_2769 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D YPDSF_1852 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D YPDSF_3854 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D YPDSF_3935 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D YPDSF_0719 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D YPDSF_2770 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D YPDSF_2430 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D YPDSF_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0105 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0074 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0094 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0063 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0108 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0033 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0097 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0031 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0064 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0106 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0075 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0086 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:ypp03009] D YPDSF_1553 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D YPDSF_1389 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D YPDSF_3608 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D YPDSF_1552 GTP-binding protein K03595 era; GTPase D YPDSF_3558 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] D YPDSF_2959 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D YPDSF_3546 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D YPDSF_2816 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D YPDSF_3750 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D YPDSF_2428 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D YPDSF_3142 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D YPDSF_0162 hypothetical protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D YPDSF_3205 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D YPDSF_3432 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D YPDSF_0581 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D YPDSF_3906 glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D YPDSF_3095 hypothetical protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D YPDSF_0350 tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D YPDSF_3338 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D YPDSF_1375 rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D YPDSF_3593 methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D YPDSF_3552 ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D YPDSF_1929 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D YPDSF_0375 16S rRNA m(2)G 1207 methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D YPDSF_2648 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D YPDSF_1529 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D YPDSF_3341 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D YPDSF_2277 hypothetical protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D YPDSF_1682 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D YPDSF_2227 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D YPDSF_2360 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D YPDSF_3137 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D YPDSF_0922 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D YPDSF_1855 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D YPDSF_2913 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D YPDSF_1808 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D YPDSF_2905 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D YPDSF_3204 SSU ribosomal protein S18P alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D YPDSF_1082 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D YPDSF_3067 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D YPDSF_2310 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D YPDSF_0262 LSU ribosomal protein L11P methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D YPDSF_2010 hypothetical protein K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D YPDSF_1816 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D YPDSF_1856 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12] D YPDSF_0276 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D YPDSF_0578 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D YPDSF_1347 ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D YPDSF_3297 cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D YPDSF_1563 ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D YPDSF_3609 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D YPDSF_2220 GTP-binding protein K03977 engA; GTPase D YPDSF_3600 GTP-binding protein K03665 hflX; GTPase D YPDSF_0168 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D YPDSF_3867 guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D YPDSF_3544 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D YPDSF_3547 hypothetical protein K09748 rimP; ribosome maturation factor RimP D YPDSF_2709 hypothetical protein K14761 rlbA; ribosome-associated protein D YPDSF_2647 hypothetical protein K09710 ybeB; ribosome-associated protein D YPDSF_2634 hypothetical protein K07042 ybeY; probable rRNA maturation factor D YPDSF_3553 hypothetical protein K07574 yhbY; RNA-binding protein D YPDSF_0028 hypothetical protein K14762 yibL; ribosome-associated protein D YPDSF_0298 hypothetical protein K09889 yjgA; ribosome-associated protein D YPDSF_2272 ribosome modulation factor K03812 rmf; ribosome modulation factor D YPDSF_0313 SSU ribosomal protein S30P / sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor D YPDSF_2915 sigma 54 modulation protein K05809 raiA; ribosome-associated inhibitor A D YPDSF_1109 hypothetical protein K06942 ychF; ribosome-binding ATPase D YPDSF_1853 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:ypp03016] D YPDSF_0434 tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D YPDSF_2092 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YPDSF_1643 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D YPDSF_3157 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D YPDSF_2643 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D YPDSF_1454 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D YPDSF_2624 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D YPDSF_1077 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D YPDSF_0628 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D YPDSF_1069 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D YPDSF_3056 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D YPDSF_2283 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D YPDSF_0717 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D YPDSF_2316 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D YPDSF_2711 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D YPDSF_3253 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D YPDSF_2223 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D YPDSF_0721 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D YPDSF_0722 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D YPDSF_0777 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D YPDSF_0084 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D YPDSF_3876 hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D YPDSF_1836 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D YPDSF_0563 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D YPDSF_1642 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D YPDSF_1995 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D YPDSF_3543 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D YPDSF_3001 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D YPDSF_2241 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_0993 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_0168 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D YPDSF_3602 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D YPDSF_3931 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D YPDSF_3905 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D YPDSF_0970 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D YPDSF_3578 inositol monophosphatase family protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D YPDSF_3934 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D YPDSF_R0007 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D YPDSF_0764 RNAse T K03683 rnt; ribonuclease T [EC:3.1.13.-] D YPDSF_3861 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D YPDSF_0899 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D YPDSF_1046 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D YPDSF_2961 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D YPDSF_3187 ATPase K06020 ettA; energy-dependent translational throttle protein EttA D YPDSF_0022 glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D YPDSF_0023 glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D YPDSF_2958 glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D YPDSF_2726 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D YPDSF_2266 tRNA-adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D YPDSF_3655 hypothetical protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D YPDSF_0261 hypothetical protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D YPDSF_2522 hypothetical protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D YPDSF_2632 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D YPDSF_1072 hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D YPDSF_1073 hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D YPDSF_2293 methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D YPDSF_3523 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D YPDSF_3068 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D YPDSF_2905 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D YPDSF_3868 tRNA (guanosine-2'-O-)-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D YPDSF_2243 SpoU-family rRNA methylase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D YPDSF_3835 methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D YPDSF_1562 hypothetical protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D YPDSF_1675 tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D YPDSF_3137 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D YPDSF_1810 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D YPDSF_0811 hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D YPDSF_3438 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D YPDSF_0124 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D YPDSF_0123 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D YPDSF_0122 hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D YPDSF_1527 sulfite reductase subunit protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D YPDSF_2239 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein D YPDSF_0617 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ D YPDSF_2004 hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D YPDSF_2827 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D YPDSF_2785 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D YPDSF_2986 6-pyruvoyl tetrahydrobiopterin synthase family protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D YPDSF_2985 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D YPDSF_1679 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D YPDSF_3607 iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D YPDSF_2826 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D YPDSF_2808 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D YPDSF_1650 hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D YPDSF_2161 acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D YPDSF_1050 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D YPDSF_0430 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D YPDSF_3605 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D YPDSF_1687 hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D YPDSF_3594 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D YPDSF_3299 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:ypp03012] D YPDSF_0906 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1 D YPDSF_3545 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D YPDSF_0718 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D YPDSF_0114 ATPase K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D YPDSF_1668 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D YPDSF_3752 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D YPDSF_0128 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D YPDSF_0127 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D YPDSF_0040 selenocysteine-specific translation elongation factor SelB K03833 selB; selenocysteine-specific elongation factor D YPDSF_1101 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1 D YPDSF_1665 ribosome recycling factor K02838 frr; ribosome recycling factor D YPDSF_1100 protoporphyrinogen oxidase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D YPDSF_1108 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D YPDSF_2325 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1 D YPDSF_2412 elongation factor P K02356 efp; elongation factor P D YPDSF_3619 translation elongation factor P (EF-P) K02356 efp; elongation factor P D YPDSF_3613 lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D YPDSF_3620 L-lysine 2,3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D YPDSF_2006 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-] D YPDSF_0627 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2 D YPDSF_3203 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3 D YPDSF_0159 hypothetical protein K09890 arfA; alternative ribosome-rescue factor D YPDSF_1645 hypothetical protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:ypp03110] D YPDSF_2327 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D YPDSF_2911 Clp ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D YPDSF_2792 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D YPDSF_3801 ATP-binding heat shock protein K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D YPDSF_2755 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG D YPDSF_3163 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YPDSF_2237 chaperone protein HscA K04044 hscA; molecular chaperone HscA D YPDSF_2190 heat shock protein K04046 yegD; hypothetical chaperone protein D YPDSF_3622 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YPDSF_3162 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D YPDSF_3138 DnaJ-like protein K05801 djlA; DnaJ like chaperone protein D YPDSF_2238 chaperone protein HscB K04082 hscB; molecular chaperone HscB D YPDSF_0066 heat-shock chaperonin K04083 hslO; molecular chaperone Hsp33 D YPDSF_2590 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D YPDSF_0012 heat shock protein K04080 ibpA; molecular chaperone IbpA D YPDSF_0013 heat shock protein K04081 ibpB; molecular chaperone IbpB D YPDSF_0067 heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D YPDSF_3623 10 kDa chaperonin K04078 groES; chaperonin GroES D YPDSF_2976 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107] D YPDSF_3551 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D YPDSF_3908 ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D YPDSF_3493 fimbrial chaperone K07346 fimC; fimbrial chaperone protein D YPDSF_1751 chaperone protein K07346 fimC; fimbrial chaperone protein D YPDSF_1737 chaperone protein K07346 fimC; fimbrial chaperone protein D YPDSF_3838 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D YPDSF_3831 hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy D YPDSF_1601 hypothetical protein K19778 hdeB; acid stress chaperone HdeB D YPDSF_3038 hypothetical protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D YPDSF_2075 hypothetical protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D YPDSF_2621 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D YPDSF_0095 peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D YPDSF_2712 peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D YPDSF_2788 peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D YPDSF_0120 peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D YPDSF_3581 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D YPDSF_3155 FKBP-type peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D YPDSF_0118 peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D YPDSF_3490 peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D YPDSF_3140 survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D YPDSF_3486 thioredoxin 1 K03671 TXN; thioredoxin D YPDSF_2906 thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D YPDSF_2720 thioredoxin K05838 ybbN; putative thioredoxin D YPDSF_2369 glutaredoxin 1 K03674 grxA; glutaredoxin 1 D YPDSF_3839 glutaredoxin K03676 grxC; glutaredoxin 3 D YPDSF_0763 hypothetical protein K07390 grxD; monothiol glutaredoxin D YPDSF_3887 secreted thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D YPDSF_0990 disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D YPDSF_0625 thiol:disulfide interchange protein (DsbC) K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D YPDSF_3628 thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D YPDSF_2020 thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:ypp04131] D YPDSF_2228 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D YPDSF_0977 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D YPDSF_2564 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YPDSF_0754 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D YPDSF_1058 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D YPDSF_2755 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:ypp04121] C 03051 Proteasome [BR:ypp03051] D YPDSF_2755 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:ypp03032] D YPDSF_1631 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D YPDSF_3729 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha D YPDSF_2790 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta D YPDSF_0723 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha D YPDSF_2302 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D YPDSF_0001 chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D YPDSF_3652 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D YPDSF_0428 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D YPDSF_3647 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YPDSF_1653 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_4091 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YPDSF_3252 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YPDSF_2645 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YPDSF_1841 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YPDSF_1630 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YPDSF_2759 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YPDSF_1341 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YPDSF_1654 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D YPDSF_3886 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YPDSF_3864 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_2097 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_0868 DNA replication terminus site binding protein K10748 tus; DNA replication terminus site-binding protein D YPDSF_0081 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YPDSF_1035 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YPDSF_1590 negative regulator of replication initiation SeqA K03645 seqA; negative modulator of initiation of replication D YPDSF_2175 regulatory inactivation of DnaA Hda protein K10763 hda; DnaA-homolog protein D YPDSF_2477 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D YPDSF_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D YPDSF_0454 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D YPDSF_0450 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D YPDSF_0917 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D YPDSF_0969 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:ypp03036] D YPDSF_1553 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D YPDSF_0958 nucleoid protein H-NS K03746 hns; DNA-binding protein H-NS D YPDSF_3729 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha D YPDSF_2790 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta D YPDSF_0723 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha D YPDSF_2302 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D YPDSF_3178 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D YPDSF_0001 chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D YPDSF_0347 DnaA-interacting protein DiaA K12961 diaA; DnaA initiator-associating protein D YPDSF_1530 hypothetical protein K11940 hspQ; heat shock protein HspQ D YPDSF_1922 DNA-binding protein K04047 dps; starvation-inducible DNA-binding protein D YPDSF_0260 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YPDSF_3601 RNA-binding protein Hfq K03666 hfq; host factor-I protein D YPDSF_0597 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D YPDSF_2320 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPDSF_1796 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPDSF_2432 nucleoid-associated protein K06899 ndpA; nucleoid-associated protein D YPDSF_2290 bacterial condensin subunit MukB K03632 mukB; chromosome partition protein MukB D YPDSF_2291 bacterial condensin subunit MukE K03804 mukE; chromosome partition protein MukE D YPDSF_2292 bacterial condensin subunit MukF K03633 mukF; chromosome partition protein MukF D YPDSF_3083 cell division protein FtsA K03590 ftsA; cell division protein FtsA D YPDSF_2998 cell division protein FtsB K05589 ftsB; cell division protein FtsB D YPDSF_3430 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D YPDSF_3093 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D YPDSF_2319 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D YPDSF_3094 cell division protein K03586 ftsL; cell division protein FtsL D YPDSF_3799 cell division protein FtsN K03591 ftsN; cell division protein FtsN D YPDSF_3084 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D YPDSF_3088 cell division protein FtsW K03588 ftsW; cell division protein FtsW D YPDSF_3429 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D YPDSF_3082 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D YPDSF_2098 cell division protein ZipA K03528 zipA; cell division protein ZipA D YPDSF_0602 cell division protein ZapA K09888 zapA; cell division protein ZapA D YPDSF_3811 hypothetical protein K09892 zapB; cell division protein ZapB D YPDSF_2279 hypothetical protein K18657 zapC; cell division protein ZapC D YPDSF_2924 hypothetical protein K18778 zapD; cell division protein ZapD D YPDSF_0333 hypothetical protein K06916 zapE; cell division protein ZapE D YPDSF_3582 hypothetical protein K07269 ytfB; cell division protein YtfB D YPDSF_1689 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YPDSF_3604 N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YPDSF_3293 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_2767 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_1043 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D YPDSF_1044 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D YPDSF_1045 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D YPDSF_1538 SOS cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA D YPDSF_3859 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D YPDSF_1590 negative regulator of replication initiation SeqA K03645 seqA; negative modulator of initiation of replication D YPDSF_0272 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D YPDSF_0273 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D YPDSF_0274 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D YPDSF_2650 rod shape-determining protein K05837 rodA; rod shape determining protein RodA D YPDSF_4008 plasmid partitioning transcription repressor K03496 parA; chromosome partitioning protein D YPDSF_4140 partitioning protein A K03496 parA; chromosome partitioning protein D YPDSF_4141 partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_4149 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_4009 plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_0454 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D YPDSF_0450 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D YPDSF_3905 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D YPDSF_3906 glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D YPDSF_3460 tyrosine recombinase XerC subunit K03733 xerC; integrase/recombinase XerC D YPDSF_0624 tyrosine recombinase XerD subunit K04763 xerD; integrase/recombinase XerD D YPDSF_1453 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D YPDSF_0420 conserved hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D YPDSF_3885 cell division checkpoint GTPase YihA K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:ypp03400] D YPDSF_0844 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D YPDSF_1576 Deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D YPDSF_1567 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D YPDSF_0562 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D YPDSF_0896 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D YPDSF_3077 mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D YPDSF_3858 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D YPDSF_3834 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D YPDSF_1290 glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D YPDSF_0021 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D YPDSF_3853 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D YPDSF_0966 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D YPDSF_2391 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D YPDSF_3731 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D YPDSF_0626 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D YPDSF_3864 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_2097 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YPDSF_3886 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YPDSF_3648 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D YPDSF_2541 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D YPDSF_1260 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D YPDSF_3458 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D YPDSF_3745 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D YPDSF_3744 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D YPDSF_0156 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D YPDSF_3866 DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D YPDSF_1824 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D YPDSF_3006 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D YPDSF_3603 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D YPDSF_1706 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D YPDSF_1418 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D YPDSF_2217 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D YPDSF_2810 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D YPDSF_1653 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_4091 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YPDSF_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YPDSF_3252 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YPDSF_2645 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YPDSF_1841 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YPDSF_1630 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YPDSF_2759 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YPDSF_1341 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YPDSF_3647 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YPDSF_0081 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YPDSF_1035 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YPDSF_1695 DNA helicase/exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D YPDSF_1697 DNA helicase/exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D YPDSF_1694 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D YPDSF_3054 RecA protein K03553 recA; recombination protein RecA D YPDSF_1065 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D YPDSF_1064 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D YPDSF_1066 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D YPDSF_3797 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D YPDSF_2762 restart primosome assembly protein PriC K04067 priC; primosomal replication protein N'' D YPDSF_2840 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D YPDSF_2839 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D YPDSF_3191 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D YPDSF_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D YPDSF_3869 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D YPDSF_1551 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D YPDSF_2757 DNA replication and repair protein RecR K06187 recR; recombination protein RecR D YPDSF_2592 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D YPDSF_2842 recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC D YPDSF_1882 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D YPDSF_2429 DEAD box helicase family protein K19789 radD; DNA repair protein RadD D YPDSF_0096 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D YPDSF_2477 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D YPDSF_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D YPDSF_0917 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D YPDSF_3729 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha D YPDSF_2790 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta D YPDSF_0260 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YPDSF_0723 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha D YPDSF_2302 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D YPDSF_3450 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D YPDSF_0958 nucleoid protein H-NS K03746 hns; DNA-binding protein H-NS D YPDSF_2858 DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D YPDSF_3657 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D YPDSF_3116 DNA damage-inducible DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D YPDSF_1860 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D YPDSF_3055 regulatory protein K03565 recX; regulatory protein D YPDSF_3489 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D YPDSF_1534 helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D YPDSF_2487 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D YPDSF_1051 DEAD box family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D YPDSF_2479 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_1623 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_4071 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YPDSF_1624 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YPDSF_4070 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YPDSF_2480 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:ypp03029] D YPDSF_3545 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D YPDSF_0718 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D YPDSF_1668 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D YPDSF_3752 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D YPDSF_0128 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D YPDSF_0127 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D YPDSF_1552 GTP-binding protein K03595 era; GTPase D YPDSF_0777 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D YPDSF_2643 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D YPDSF_1069 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D YPDSF_1077 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D YPDSF_3647 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YPDSF_1660 surface antigen K07277 SAM50; outer membrane protein insertion porin family D YPDSF_3163 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YPDSF_2590 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D YPDSF_3622 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YPDSF_3623 10 kDa chaperonin K04078 groES; chaperonin GroES D YPDSF_3162 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D YPDSF_2241 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_0993 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_2238 chaperone protein HscB K04082 hscB; molecular chaperone HscB D YPDSF_0763 hypothetical protein K07390 grxD; monothiol glutaredoxin D YPDSF_1453 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D YPDSF_2803 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D YPDSF_3932 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D YPDSF_2755 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:ypp02000] D YPDSF_1212 lipoprotein inner membrane ABC-transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D YPDSF_1211 inner membrane ABC-transporter YbtQ K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D YPDSF_2300 transport ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D YPDSF_2780 ABC transporter (ATP-binding protein) K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D YPDSF_2779 ATP transporter (ATP-binding protein) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D YPDSF_0886 hypothetical protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D YPDSF_0882 toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D YPDSF_3808 hypothetical protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D YPDSF_2666 ABC transport protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D YPDSF_1387 ABC transporter (ATP-binding protein) K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D YPDSF_3532 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D YPDSF_2323 transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D YPDSF_2322 transport ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D YPDSF_2331 ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D YPDSF_2108 ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D YPDSF_2276 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D YPDSF_2122 thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D YPDSF_3825 exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D YPDSF_2121 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D YPDSF_2120 sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D YPDSF_2119 sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D YPDSF_3824 hypothetical protein K02020 modA; molybdate transport system substrate-binding protein D YPDSF_2552 molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein D YPDSF_2551 molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein D YPDSF_2550 molybdenum transport ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D YPDSF_2555 molybdenum transport ATP-binding protein modF K05776 modF; molybdate transport system ATP-binding protein D YPDSF_0107 taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein D YPDSF_0109 taurine transport system permease protein K15552 tauC; taurine transport system permease protein D YPDSF_0108 taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D YPDSF_0231 aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D YPDSF_0233 aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein D YPDSF_0234 aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D YPDSF_2066 iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein D YPDSF_2155 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein D YPDSF_2067 iron(III)-transport system permease K02011 afuB; iron(III) transport system permease protein D YPDSF_2154 binding protein-dependent transport system, inner-membrane component K02011 afuB; iron(III) transport system permease protein D YPDSF_2068 iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D YPDSF_2153 ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D YPDSF_3112 thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein D YPDSF_3113 thiamine transport system permease protein K02063 thiP; thiamine transport system permease protein D YPDSF_3114 thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D YPDSF_2366 putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein D YPDSF_2362 putrescine transport system permease protein K11074 potI; putrescine transport system permease protein D YPDSF_2363 putrescine transport system permease protein K11075 potH; putrescine transport system permease protein D YPDSF_2364 putrescine transport ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D YPDSF_2193 transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D YPDSF_1094 hypothetical protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D YPDSF_2191 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D YPDSF_1093 binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D YPDSF_1092 binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D YPDSF_2192 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D YPDSF_2196 putative ABC-transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D YPDSF_1091 hypothetical protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D YPDSF_1627 glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D YPDSF_1626 glycine betaine/L-proline transport system permease K02001 proW; glycine betaine/proline transport system permease protein D YPDSF_1625 glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D YPDSF_2500 hypothetical protein K05845 opuC; osmoprotectant transport system substrate-binding protein D YPDSF_2497 ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein D YPDSF_2499 ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein D YPDSF_2498 ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D YPDSF_0858 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D YPDSF_0857 transport system permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D YPDSF_0856 ATPase K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D YPDSF_0186 maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein D YPDSF_0185 maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein D YPDSF_0184 maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein D YPDSF_0188 maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_1893 mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_0655 sugar transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_1230 ABC-type sugar transport system, ATPase components K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_1231 binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_0394 transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_3279 sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_0656 sugar-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D YPDSF_0658 maltodextrin transport permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D YPDSF_0659 maltodextrin permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D YPDSF_0879 L-arabinose-binding periplasmic protein precursor K10537 araF; L-arabinose transport system substrate-binding protein D YPDSF_0878 L-arabinose transport ATP-binding protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D YPDSF_1729 sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein D YPDSF_1726 ABC sugar transporter (permease) K10193 togM; oligogalacturonide transport system permease protein D YPDSF_1727 sugar ABC transporter (permease) K10194 togN; oligogalacturonide transport system permease protein D YPDSF_1728 sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein D YPDSF_1470 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D YPDSF_1468 galactoside permease K10541 mglC; methyl-galactoside transport system permease protein D YPDSF_1469 galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D YPDSF_3779 sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein D YPDSF_3777 sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein D YPDSF_3778 sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D YPDSF_0555 sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_1913 sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_3326 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein D YPDSF_0557 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein D YPDSF_1910 sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein D YPDSF_3327 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein D YPDSF_0556 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YPDSF_3328 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YPDSF_3520 periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein D YPDSF_3517 sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein D YPDSF_3518 sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein D YPDSF_3519 sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D YPDSF_3042 sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein D YPDSF_3045 sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein D YPDSF_3044 sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein D YPDSF_0652 sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein D YPDSF_0653 sugar transport system permease K17206 xltB; putative xylitol transport system permease protein D YPDSF_0654 sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein D YPDSF_2673 sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein D YPDSF_2671 sugar transport system permease protein K17209 iatP; inositol transport system permease protein D YPDSF_2672 sugar transport ATP-binding protein K17210 iatA; inositol transport system ATP-binding protein D YPDSF_3413 glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D YPDSF_3412 sn-glycerol-3-phosphate transport system, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D YPDSF_3411 sn-glycerol-3-phosphate transport system, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D YPDSF_3410 sn-glycerol-3-phosphate transport, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D YPDSF_3222 periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein D YPDSF_3220 ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein D YPDSF_3221 ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein D YPDSF_3219 ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein D YPDSF_0324 membrane protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D YPDSF_0323 membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D YPDSF_0322 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D YPDSF_0325 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein D YPDSF_0326 anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein D YPDSF_1234 exported solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D YPDSF_1890 solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D YPDSF_3282 sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D YPDSF_0397 sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D YPDSF_0398 permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D YPDSF_1233 binding-protein-dependent transport system, inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D YPDSF_1889 sugar ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D YPDSF_3281 sugar transport system, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D YPDSF_3280 sugar transport system, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D YPDSF_0399 permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D YPDSF_1232 binding-protein-dependent transport system, inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D YPDSF_1888 sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D YPDSF_0240 periplasmic binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YPDSF_1311 sugar-binding periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YPDSF_2403 periplasmic carbohydrate-binding transport protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YPDSF_1457 sugar ABC transporter K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YPDSF_3032 sugar ABC transporter, periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YPDSF_1309 sugar ABC transporter, permease K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_0242 branched-chain amino acid transport system, permease component K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_0243 ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_1312 sugar transport system permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_2401 ABC transport integral membrane subunit K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_1424 ribose transport system, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_3029 sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_3030 sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_0227 carbohydrate transport protein K02057 ABC.SS.P; simple sugar transport system permease protein D YPDSF_1310 sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_0241 ABC transporter ATP binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_2402 ABC transport ATP-binding subunit K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_1423 ATPase K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_3031 sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YPDSF_3918 phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein D YPDSF_2836 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D YPDSF_3919 phosphate transport system permease K02037 pstC; phosphate transport system permease protein D YPDSF_2185 phosphate transport system permease K02037 pstC; phosphate transport system permease protein D YPDSF_3920 phosphate transport system permease K02038 pstA; phosphate transport system permease protein D YPDSF_2184 phosphate transport system permease K02038 pstA; phosphate transport system permease protein D YPDSF_3921 phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D YPDSF_2183 phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D YPDSF_2512 substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein D YPDSF_2511 ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein D YPDSF_2510 ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein D YPDSF_2513 ABC transport ATP-binding subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D YPDSF_1985 histidine transport system permease protein HisM K10015 hisM; histidine transport system permease protein D YPDSF_1986 histidine transport system permease protein HisQ K10016 hisQ; histidine transport system permease protein D YPDSF_1984 histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_1987 histidine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein D YPDSF_1924 glutamine-binding periplasmic protein K10036 glnH; glutamine transport system substrate-binding protein D YPDSF_1925 glutamine transport system permease K10037 glnP; glutamine transport system permease protein D YPDSF_1926 glutamine transport ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_2359 hypothetical protein K09996 artJ; arginine transport system substrate-binding protein D YPDSF_2347 arginine-binding periplasmic protein 1 precursor K09997 artI; arginine transport system substrate-binding protein D YPDSF_2349 arginine transport system permease protein K09998 artM; arginine transport system permease protein D YPDSF_2348 arginine transport system permease protein K09999 artQ; arginine transport system permease protein D YPDSF_2346 arginine transport ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_2638 amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein D YPDSF_2640 glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein D YPDSF_2639 glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein D YPDSF_2641 glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_1278 amino-acid ABC transporter (permease) K10009 tcyB; L-cystine transport system permease protein D YPDSF_1277 amino-acid ABC transporter (ATP-binding protein) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_3425 branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D YPDSF_3424 high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D YPDSF_3423 high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D YPDSF_3422 high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D YPDSF_3421 high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D YPDSF_1640 lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D YPDSF_2379 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein D YPDSF_2377 ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein D YPDSF_1639 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein D YPDSF_1638 ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D YPDSF_2378 ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein D YPDSF_2508 substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein D YPDSF_2507 Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein D YPDSF_2506 Branched-chain amino acid transport system, permease component K11961 urtC; urea transport system permease protein D YPDSF_2505 ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein D YPDSF_2504 ABC transport ATP-binding subunit K11963 urtE; urea transport system ATP-binding protein D YPDSF_2542 amino acid transporter K11963 urtE; urea transport system ATP-binding protein D YPDSF_2893 amino acid ABC transporter, periplasmic protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D YPDSF_3924 periplasmic solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D YPDSF_3926 amino acid transport system permease K02029 ABC.PA.P; polar amino acid transport system permease protein D YPDSF_3925 ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D YPDSF_2891 amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein D YPDSF_2892 amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein D YPDSF_2890 amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D YPDSF_0954 periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein D YPDSF_0806 periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D YPDSF_0953 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein D YPDSF_0952 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein D YPDSF_0951 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D YPDSF_0950 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D YPDSF_3369 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D YPDSF_3368 dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein D YPDSF_3367 dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein D YPDSF_3366 dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein D YPDSF_3365 dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein D YPDSF_0788 peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein D YPDSF_0787 peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein D YPDSF_0786 peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein D YPDSF_0785 peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein D YPDSF_0784 peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein D YPDSF_3258 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D YPDSF_1616 solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D YPDSF_3260 transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D YPDSF_1615 membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D YPDSF_3261 transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D YPDSF_1614 binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D YPDSF_3262 ABC transporter transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D YPDSF_1613 transport ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D YPDSF_3263 ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D YPDSF_1612 transport ATPase K02032 ddpF; peptide/nickel transport system ATP-binding protein D YPDSF_2421 substrate-binding transport protein K13893 yejA; microcin C transport system substrate-binding protein D YPDSF_2422 ABC transporter integral membrane subunit K13894 yejB; microcin C transport system permease protein D YPDSF_2423 ABC transporter integral membrane subunit K13895 yejE; microcin C transport system permease protein D YPDSF_2424 ABC transporter ATP-binding subunit K13896 yejF; microcin C transport system ATP-binding protein D YPDSF_2966 ferrichrome-binding periplasmic protein precursor K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D YPDSF_2967 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein D YPDSF_3689 hemin-binding periplasmic protein K25132 hmuT; heme transport system substrate-binding protein D YPDSF_3690 hemin transport system permease protein HmuU K25133 hmuU; heme transport system permease protein D YPDSF_3691 hemin transport system ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D YPDSF_0485 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D YPDSF_1440 iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D YPDSF_1441 iron-siderophore transport system, transmembrane component K23186 fepD; iron-siderophore transport system permease protein D YPDSF_1442 iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein D YPDSF_1443 iron-siderophore transport system, ATP-binding component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D YPDSF_3765 iron transport protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D YPDSF_3767 iron transport permease K25283 yclO; iron-siderophore transport system permease protein D YPDSF_3766 iron transport permease K25284 yclN; iron-siderophore transport system permease protein D YPDSF_3768 iron ABC transporter, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D YPDSF_2386 periplasmic substrate-binding transport protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D YPDSF_0559 hypothetical protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D YPDSF_2385 FecCD-family membrane transport protein K02015 ABC.FEV.P; iron complex transport system permease protein D YPDSF_2355 FecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein D YPDSF_2384 siderophore ABC transporter, ATP-binding subunit K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D YPDSF_2354 transport ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D YPDSF_2973 priplasmic metal binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D YPDSF_0725 putative vitamin B12 transport system permease protein K06073 btuC; vitamin B12 transport system permease protein D YPDSF_0727 vitamin B12 transport ATP-binding protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D YPDSF_1061 exported high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein D YPDSF_1063 high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein D YPDSF_1062 high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D YPDSF_0713 periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein D YPDSF_0711 chelated iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein D YPDSF_0710 chelated iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein D YPDSF_0712 ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein D YPDSF_3250 membrane protein K07091 lptF; lipopolysaccharide export system permease protein D YPDSF_3249 membrane protein K11720 lptG; lipopolysaccharide export system permease protein D YPDSF_0316 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D YPDSF_1823 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D YPDSF_1821 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D YPDSF_1822 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D YPDSF_1089 ABC transporter, ATP-binding subunit K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D YPDSF_2023 heme exporter protein D K02196 ccmD; heme exporter protein D D YPDSF_2024 heme exporter protein C K02195 ccmC; heme exporter protein C D YPDSF_2025 heme exporter protein B K02194 ccmB; heme exporter protein B D YPDSF_2026 heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D YPDSF_3429 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D YPDSF_3430 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D YPDSF_2950 ABC transporter, integral membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D YPDSF_2949 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D YPDSF_1178 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D YPDSF_1177 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D YPDSF_1477 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D YPDSF_2716 permease K02004 ABC.CD.P; putative ABC transport system permease protein D YPDSF_1176 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D YPDSF_2717 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D YPDSF_1479 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D YPDSF_0746 Iron-regulated ABC transporter ATPase subunit SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D YPDSF_0873 membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D YPDSF_0755 transport protein K26939 norM; MATE family, multidrug efflux pump D YPDSF_1405 sugar transporter K26937 dinF; MATE family, multidrug efflux pump D YPDSF_1393 hypothetical protein K02532 lacY; MFS transporter, OHS family, lactose permease D YPDSF_3110 hypothetical protein K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter D YPDSF_2525 hypothetical protein K11537 xapB; MFS transporter, NHS family, xanthosine permease D YPDSF_3166 transport protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D YPDSF_2123 sugar transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter D YPDSF_0667 sugar transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D YPDSF_1355 4-hydroxyphenylacetate permease K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease D YPDSF_1412 transmembrane transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein D YPDSF_2248 transport permease protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D YPDSF_3372 regulatory protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D YPDSF_1709 membrane protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D YPDSF_2797 Beta-lactamase induction signal transducer AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D YPDSF_0985 multidrug resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D YPDSF_2427 drug resistance translocator protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D YPDSF_0046 multidrug translocase K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D YPDSF_1083 membrane protein K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein D YPDSF_1715 sugar transport protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D YPDSF_2904 multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D YPDSF_1736 transport protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D YPDSF_2201 membrane protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein D YPDSF_0867 membrane protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D YPDSF_1779 membrane protein K26602 yihN; MFS transporter, GlpU family, inner membrane protein D YPDSF_2315 membrane protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein D YPDSF_1210 signal transducer K05373 ybtX; MFS transporter, putative signal transducer D YPDSF_0090 conserved integral membrane protein K06141 tsgA; MFS transporter, TsgA protein D YPDSF_1874 transporter protein K08368 yaaU; MFS transporter, putative metabolite transport protein D YPDSF_2102 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D YPDSF_1704 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D YPDSF_2101 PTS system, phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D YPDSF_0310 phosphocarrier protein K08485 ptsO; phosphocarrier protein NPr D YPDSF_3226 phosphoenolpyruvate--protein phosphotransferase K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-] D YPDSF_2399 hypothetical protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D YPDSF_2103 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YPDSF_1839 PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D YPDSF_2625 pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D YPDSF_0304 PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D YPDSF_2397 PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D YPDSF_3229 PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-] D YPDSF_3228 PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-] D YPDSF_3227 PTS system, IIC component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component D YPDSF_0025 PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D YPDSF_1594 PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D YPDSF_1596 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D YPDSF_1595 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D YPDSF_1366 PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D YPDSF_1367 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component D YPDSF_1368 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component D YPDSF_0677 PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D YPDSF_0680 PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D YPDSF_0679 PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D YPDSF_0678 PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D YPDSF_1976 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D YPDSF_1977 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D YPDSF_1978 membrane protein K03475 ulaA; ascorbate PTS system EIIC component D YPDSF_0312 nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D YPDSF_3812 glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D YPDSF_1600 potassium channel protein K10716 kch; voltage-gated potassium channel D YPDSF_2777 ammonium transporter K03320 amt; ammonium transporter, Amt family D YPDSF_0779 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D YPDSF_2382 glutathione S-transferase-family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D YPDSF_0336 stringent starvation protein A K03599 sspA; stringent starvation protein A D YPDSF_2114 membrane protein K07114 yfbK; Ca-activated chloride channel homolog D YPDSF_2311 formate transporter 1 K06212 focA; formate transporter D YPDSF_0086 nitrite transporter K02598 nirC; nitrite transporter D YPDSF_0160 mechanosensitive ion channel K03282 mscL; large conductance mechanosensitive channel D YPDSF_2764 potassium efflux system K05802 mscK; potassium-dependent mechanosensitive channel D YPDSF_3612 membrane transport protein K22051 mscM; miniconductance mechanosensitive channel D YPDSF_0594 membrane protein K03442 mscS; small conductance mechanosensitive channel D YPDSF_1883 membrane protein K16053 ybdG; miniconductance mechanosensitive channel D YPDSF_2189 divalent cation transport protein K06213 mgtE; magnesium transporter D YPDSF_1603 urea transporter K08717 utp; urea transporter D YPDSF_1783 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YPDSF_1782 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YPDSF_0466 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D YPDSF_0467 ExbD/TolR-family transport protein K03559 exbD; biopolymer transport protein ExbD D YPDSF_2575 TolQ colicin import protein K03562 tolQ; biopolymer transport protein TolQ D YPDSF_2574 TolR colicin import membrane protein K03560 tolR; biopolymer transport protein TolR D YPDSF_3454 magnesium and cobalt transport protein K03284 corA; magnesium transporter D YPDSF_0807 CorA-like Mg2+ transporter protein K16074 zntB; zinc transporter D YPDSF_2658 camphor resistance protein CrcB K06199 crcB; fluoride exporter D YPDSF_1598 membrane protein K06199 crcB; fluoride exporter D YPDSF_1599 membrane protein K06199 crcB; fluoride exporter D YPDSF_3575 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D YPDSF_3062 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D YPDSF_2284 outer membrane porin C protein K09476 ompF; outer membrane pore protein F D YPDSF_2488 outer membrane protein C2 K11929 phoE; outer membrane pore protein E D YPDSF_2470 outer membrane protein C, porin K09475 ompC; outer membrane pore protein C D YPDSF_0189 maltoporin K02024 lamB; maltoporin D YPDSF_0664 maltoporin K02024 lamB; maltoporin D YPDSF_1539 outer membrane porin A protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D YPDSF_1918 outer membrane protein K11934 ompX; outer membrane protein X D YPDSF_2249 attachment invasion locus protein K16078 ail; attachment invasion locus protein D YPDSF_2016 long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein D YPDSF_3494 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_2392 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein D YPDSF_1739 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_1752 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_4097 F1 capsule anchoring protein K07347 fimD; outer membrane usher protein D YPDSF_1203 fimbrial usher protein K07347 fimD; outer membrane usher protein D YPDSF_2051 hypothetical protein K07347 fimD; outer membrane usher protein D YPDSF_3522 vitamin B12 receptor protein K16092 btuB; vitamin B12 transporter D YPDSF_3533 hemophore HasA K12545 hasA; heme acquisition protein HasA D YPDSF_3534 TonB dependent receptor protein K16152 hasR; heme acquisition protein HasR D YPDSF_1219 pesticin/yersiniabactin receptor protein K15721 fyuA; pesticin/yersiniabactin receptor D YPDSF_1439 iron-siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D YPDSF_3020 hypothetical protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D YPDSF_2383 outer membrane protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D YPDSF_3687 hemin receptor precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D YPDSF_1371 ferrichrome receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D YPDSF_0558 hydroxamate-type ferrisiderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D YPDSF_0091 membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D YPDSF_0524 ferric siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D YPDSF_0445 ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YPDSF_3291 outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D YPDSF_1660 surface antigen K07277 SAM50; outer membrane protein insertion porin family D YPDSF_2221 lipoprotein K17713 bamB; outer membrane protein assembly factor BamB D YPDSF_2166 lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D YPDSF_2914 lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D YPDSF_2593 hypothetical protein K06186 bamE; outer membrane protein assembly factor BamE D YPDSF_3573 hypothetical protein K07278 tamA; translocation and assembly module TamA D YPDSF_3572 hypothetical protein K09800 tamB; translocation and assembly module TamB D YPDSF_3362 hypothetical protein K22110 kdgM; oligogalacturonate-specific porin family protein D YPDSF_1730 hypothetical protein K22110 kdgM; oligogalacturonate-specific porin family protein D YPDSF_0317 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D YPDSF_0318 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D YPDSF_3139 organic solvent tolerance protein precursor K04744 lptD; LPS-assembly protein D YPDSF_2644 rare lipoprotein B precursor K03643 lptE; LPS-assembly lipoprotein D YPDSF_3988 Yop targeting protein K23475 yopB; transloator D YPDSF_3989 Yop negative regulation/targeting component K23476 yopD; transloator D YPDSF_2636 membrane protein K06189 corC; hemolysin (HlyC) family protein D YPDSF_1460 membrane protein K06518 cidA; holin-like protein D YPDSF_2468 transport protein K16210 togT; oligogalacturonide transporter D YPDSF_2388 lysine-specific permease K11733 lysP; lysine-specific permease D YPDSF_2933 aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP D YPDSF_1379 aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP D YPDSF_2834 proline-specific permease K11736 proY; proline-specific permease ProY D YPDSF_1266 D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter D YPDSF_1187 L-asparagine permease K11738 ansP; L-asparagine permease D YPDSF_3758 amino acid permease K16234 hutT; histidine transporter D YPDSF_0838 amino acid antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D YPDSF_2495 amino acid permease K03759 adiC; arginine:agmatine antiporter D YPDSF_0439 permease K16263 yjeH; amino acid efflux transporter D YPDSF_2567 cation transport protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D YPDSF_3827 integral membrane protein K13283 fieF; ferrous-iron efflux pump FieF D YPDSF_3292 multidrug efflux protein K18138 acrB; multidrug efflux pump D YPDSF_2768 multidrug efflux protein K18138 acrB; multidrug efflux pump D YPDSF_2148 multidrug efflux protein K18324 acrD; multidrug efflux pump D YPDSF_2198 AcrB/AcrD/AcrF family membrane protein K07788 mdtB; multidrug efflux pump D YPDSF_0813 quaternary ammonium compound-resistance protein K03297 emrE; small multidrug resistance pump D YPDSF_3618 chaperone K11741 sugE; quaternary ammonium compound-resistance protein SugE D YPDSF_1053 integral membrane protein K11742 mdtI; spermidine export protein MdtI D YPDSF_1054 integral membrane protein K11743 mdtJ; spermidine export protein MdtJ D YPDSF_1586 membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D YPDSF_1919 membrane protein K11939 rhtA; inner membrane transporter RhtA D YPDSF_3637 L-rhamnose-proton symport protein K02856 rhaT; L-rhamnose-H+ transport protein D YPDSF_3453 membrane protein K05786 rarD; chloramphenicol-sensitive protein RarD D YPDSF_0733 membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D YPDSF_3319 gluconate permease K06155 gntT; Gnt-I system high-affinity gluconate transporter D YPDSF_3345 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D YPDSF_3626 anaerobic C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA D YPDSF_3072 hypothetical protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D YPDSF_2529 high-affinity choline transport protein K02168 betT; choline/glycine/proline betaine transport protein D YPDSF_1164 calcium/proton antiporter K07300 chaA; Ca2+:H+ antiporter D YPDSF_0321 sodium/calcium exchanger protein K07301 yrbG; cation:H+ antiporter D YPDSF_3332 phosphate transport protein K16322 pit; low-affinity inorganic phosphate transporter D YPDSF_0263 sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter D YPDSF_1272 proline permease K11928 putP; sodium/proline symporter D YPDSF_3720 transmembrane transport protein K14393 actP; cation/acetate symporter D YPDSF_3717 proton glutamate symport protein K11102 gltP; proton glutamate symport protein D YPDSF_3358 C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D YPDSF_0371 symporter protein K07862 sstT; serine/threonine transporter D YPDSF_3870 sodium/glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family D YPDSF_3161 sodium-proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family D YPDSF_0989 Na+/H+ antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family D YPDSF_0237 putative Na(+)/H(+) exchanger protein K24163 nhaK; monovalent cation/hydrogen antiporter D YPDSF_0116 potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D YPDSF_0115 hypothetical protein K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D YPDSF_2733 potassium antiporter K26735 KEA4_5_6; K+:H+ antiporter D YPDSF_3383 Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein D YPDSF_0161 trk system potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D YPDSF_3871 membrane permease K16345 xanP; xanthine permease XanP D YPDSF_3928 Xanthine/uracil permeases family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D YPDSF_0236 xanthine/uracil permease K06901 pbuG; adenine/guanine/hypoxanthine permease D YPDSF_2090 nucleoside permease K11535 nupC; nucleoside transport protein D YPDSF_2484 tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein D YPDSF_2411 tryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein D YPDSF_2375 serine transporter K03837 sdaC; serine transporter D YPDSF_3693 transmembrane transport protein K26603 yhjV; inner membrane transport protein D YPDSF_2969 chloride channel protein K03281 clcA; chloride channel protein, CIC family D YPDSF_0863 membrane protein K03281 clcA; chloride channel protein, CIC family D YPDSF_1602 nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D YPDSF_1096 hypothetical protein K03321 TC.SULP; sulfate permease, SulP family D YPDSF_2089 manganese transport protein MntH K03322 mntH; manganese transport protein D YPDSF_3014 arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein D YPDSF_3476 lipopolysaccharide biosynthesis protein K16693 wzxE; enterobacterial common antigen flippase D YPDSF_1080 membrane protein K03980 murJ; putative peptidoglycan lipid II flippase D YPDSF_2219 membrane protein K13936 mdcF; malonate transporter and related proteins D YPDSF_3408 membrane protein K13936 mdcF; malonate transporter and related proteins D YPDSF_3899 potassium transport protein K03549 kup; KUP system potassium uptake protein D YPDSF_0595 LysE type translocator K06895 lysE; L-lysine exporter family protein LysE/ArgO D YPDSF_3448 homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D YPDSF_3449 threonine efflux protein K05835 rhtC; threonine efflux protein D YPDSF_3150 LysE type translocator K05835 rhtC; threonine efflux protein D YPDSF_2900 amino acid transporter K26605 azlC; branched chain amino acid efflux pump D YPDSF_2901 membrane protein K26606 azlD; branched chain amino acid efflux pump D YPDSF_0293 membrane protein K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB D YPDSF_0403 membrane protein K15547 mdtO; multidrug resistance protein MdtO D YPDSF_2172 membrane protein K03548 perM; putative permease D YPDSF_3439 membrane protein K09125 yhhQ; queuosine precursor transporter D YPDSF_0715 multiple antibiotic resistance protein K05595 marC; multiple antibiotic resistance protein D YPDSF_3088 cell division protein FtsW K03588 ftsW; cell division protein FtsW D YPDSF_1370 membrane protein K23242 mntP; manganese efflux pump family protein D YPDSF_1271 membrane protein K07243 FTR; high-affinity iron transporter D YPDSF_1270 hypothetical protein K07224 efeO; iron uptake system component EfeO D YPDSF_1269 hypothetical protein K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D YPDSF_1180 hypothetical protein K07230 p19; periplasmic iron binding protein D YPDSF_2245 membrane protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein D YPDSF_0941 TonB protein K03832 tonB; periplasmic protein TonB D YPDSF_3530 membrane protein K03832 tonB; periplasmic protein TonB D YPDSF_2571 peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein D YPDSF_2573 TolA colicin import membrane protein K03646 tolA; colicin import membrane protein D YPDSF_2572 TolB colicin import protein K03641 tolB; TolB protein D YPDSF_2072 dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D YPDSF_3035 anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D YPDSF_3036 anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D YPDSF_2073 dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D YPDSF_3037 anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D YPDSF_2074 dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D YPDSF_1711 biotin sulfoxide reductas2 K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D YPDSF_2903 multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system D YPDSF_0404 HlyD family secretion protein K15549 mdtN; membrane fusion protein, multidrug efflux system D YPDSF_3531 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system D YPDSF_0884 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system D YPDSF_3807 hypothetical protein K13408 cvaA; membrane fusion protein D YPDSF_3293 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_2767 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_2553 membrane protein K25859 acrZ; accessory protein, multidrug efflux pump D YPDSF_2197 putative HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system D YPDSF_2332 HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system D YPDSF_2107 HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system D YPDSF_0292 HlyD family secretion protein K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA D YPDSF_2568 intergral membrane NMN transport protein PnuC K03811 pnuC; nicotinamide mononucleotide transporter D YPDSF_0060 hypothetical ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D YPDSF_0059 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D YPDSF_0058 hypothetical protein K07490 feoC; ferrous iron transport protein C D YPDSF_3334 universal stress protein B K06144 uspB; universal stress protein B D YPDSF_2021 cytochrome c-type biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF D YPDSF_1787 Mg(2+) transport ATPase protein C K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D YPDSF_0814 membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D YPDSF_1338 copper resistance protein D K07245 pcoD; copper resistance protein D D YPDSF_1339 copper resistance protein K07156 copC; copper resistance protein C D YPDSF_0979 hypothetical protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:ypp02044] D YPDSF_0445 ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YPDSF_0886 hypothetical protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D YPDSF_0882 toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D YPDSF_0884 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system D YPDSF_3532 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D YPDSF_3531 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system D YPDSF_3807 hypothetical protein K13408 cvaA; membrane fusion protein D YPDSF_3808 hypothetical protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D YPDSF_0693 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D YPDSF_0694 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D YPDSF_0695 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D YPDSF_0696 general protein secretion protein K02455 gspF; general secretion pathway protein F D YPDSF_0697 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D YPDSF_0698 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D YPDSF_0699 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D YPDSF_0700 general secretion pathway protein K K02460 gspK; general secretion pathway protein K D YPDSF_0701 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D YPDSF_0703 prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D YPDSF_0704 lipoprotein K02465 gspS; general secretion pathway protein S D YPDSF_2226 fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF D YPDSF_0575 hypothetical protein K02669 pilT; twitching motility protein PilT D YPDSF_0479 membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D YPDSF_0478 membrane protein K02279 cpaB; pilus assembly protein CpaB D YPDSF_0477 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D YPDSF_0475 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D YPDSF_0474 type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D YPDSF_0473 membrane protein K12510 tadB; tight adherence protein B D YPDSF_0472 hypothetical protein K12511 tadC; tight adherence protein C D YPDSF_0471 hypothetical protein K12512 tadD; tight adherence protein D D YPDSF_0470 membrane protein K12513 tadE; tight adherence protein E D YPDSF_0469 hypothetical protein K12514 tadF; tight adherence protein F D YPDSF_0468 membrane protein K12515 tadG; tight adherence protein G D YPDSF_1701 hypothetical protein K02679 ppdA; prepilin peptidase dependent protein A D YPDSF_1700 prepilin peptidase dependent protein K02680 ppdB; prepilin peptidase dependent protein B D YPDSF_1698 prepilin peptidase dependent protein K02681 ppdC; prepilin peptidase dependent protein C D YPDSF_2929 prepilin peptidase dependent protein D precursor K02682 ppdD; prepilin peptidase dependent protein D D YPDSF_2928 type II secretion system protein K02504 hofB; protein transport protein HofB D YPDSF_2927 type II secretion system protein K02505 hofC; protein transport protein HofC D YPDSF_0072 hypothetical protein K12288 hofM; pilus assembly protein HofM D YPDSF_0073 membrane protein K12289 hofN; pilus assembly protein HofN D YPDSF_0074 membrane protein K12290 hofO; pilus assembly protein HofO D YPDSF_0075 membrane protein K12291 hofP; pilus assembly protein HofP D YPDSF_0077 membrane transport protein K02507 hofQ; protein transport protein HofQ D YPDSF_0572 membrane protein K02221 yggT; YggT family protein D YPDSF_2787 hypothetical protein K02237 comEA; competence protein ComEA D YPDSF_2301 membrane protein K02238 comEC; competence protein ComEC D YPDSF_3967 type III secretion protein K03219 yscC; type III secretion protein C D YPDSF_3714 type III secretion protein K03219 yscC; type III secretion protein C D YPDSF_3713 type-III secretion protein K03220 yscD; type III secretion protein D D YPDSF_3966 type III secretion protein K03220 yscD; type III secretion protein D D YPDSF_3964 type III secretion protein K03221 yscF; type III secretion protein F D YPDSF_3961 type III secretion protein K04053 yscI; type III secretion protein I D YPDSF_3960 type III secretion lipoprotein K03222 yscJ; type III secretion protein J D YPDSF_3708 type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J D YPDSF_3959 type III secretion protein K04054 yscK; type III secretion protein K D YPDSF_3958 type III secretion protein K03223 yscL; type III secretion protein L D YPDSF_3977 type III secretion system ATPase, FliI/YscN K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D YPDSF_3704 type III secretion system ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D YPDSF_3976 type III secretion protein K04056 yscO; type III secretion protein O D YPDSF_3975 type III secretion protein K04057 yscP; type III secretion protein P D YPDSF_3974 type III secretion protein K03225 yscQ; type III secretion protein Q D YPDSF_3701 type III secretion system apparatus protein K03225 yscQ; type III secretion protein Q D YPDSF_3700 type III secretion apparatus protein K03226 yscR; type III secretion protein R D YPDSF_3973 Yop secretion membrane protein K03226 yscR; type III secretion protein R D YPDSF_3972 type III secretion protein K03227 yscS; type III secretion protein S D YPDSF_3699 type III secretion apparatus protein K03227 yscS; type III secretion protein S D YPDSF_3971 type III secretion protein K03228 yscT; type III secretion protein T D YPDSF_3698 type III secretion apparatus protein K03228 yscT; type III secretion protein T D YPDSF_3970 type III secretion protein K03229 yscU; type III secretion protein U D YPDSF_3697 type III secretion apparatus protein K03229 yscU; type III secretion protein U D YPDSF_3705 secretion system apparatus protein K03230 yscV; type III secretion protein V D YPDSF_3983 membrane-bound Yop protein K03230 yscV; type III secretion protein V D YPDSF_3978 type III secretion outer membrane protein PopN K04058 yscW; type III secretion protein W D YPDSF_3981 type III secretion protein K04059 yscX; type III secretion protein X D YPDSF_3968 hypothetical protein K04049 yscB; type III secretion protein B D YPDSF_3965 type III secretion protein K04050 yscE; type III secretion protein E D YPDSF_3963 type III secretion protein K04051 yscG; type III secretion protein G D YPDSF_3962 type III secretion protein K04052 yscH; type III secretion protein H D YPDSF_3957 type III secretion regulatory protein K04055 yscM; type III secretion protein M D YPDSF_3982 type III secretion protein K04060 yscY; type III secretion protein Y D YPDSF_1333 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D YPDSF_0489 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA D YPDSF_1334 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YPDSF_0490 flagellar assembly protein K02401 flhB; flagellar biosynthesis protein FlhB D YPDSF_1294 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YPDSF_0498 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YPDSF_1296 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YPDSF_0500 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D YPDSF_1297 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YPDSF_0501 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YPDSF_1302 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D YPDSF_0494 flagellar switch protein K02417 fliN; flagellar motor switch protein FliN D YPDSF_1303 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D YPDSF_1304 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D YPDSF_0493 flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP D YPDSF_1305 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D YPDSF_0492 flagellar assembly protein K02420 fliQ; flagellar biosynthesis protein FliQ D YPDSF_1306 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YPDSF_0491 flagellar assembly protein K02421 fliR; flagellar biosynthesis protein FliR D YPDSF_4105 conjugative transfer assembly and aggregate stability protein K12056 traG; conjugal transfer mating pair stabilization protein TraG D YPDSF_4109 conjugative transfer assembly protein K12057 traF; conjugal transfer pilus assembly protein TraF D YPDSF_4110 conjugative transfer aggregate stability protein K12058 traN; conjugal transfer mating pair stabilization protein TraN D YPDSF_4111 conjugative transfer protein K12059 trbC; conjugal transfer pilus assembly protein TrbC D YPDSF_4112 conjugative transfer assembly protein K12060 traU; conjugal transfer pilus assembly protein TraU D YPDSF_4113 conjugative transfer assembly protein K12061 traW; conjugal transfer pilus assembly protein TraW D YPDSF_4114 conjugative transfer protein K12062 trbI; conjugal transfer pilin signal peptidase TrbI D YPDSF_4115 conjugative transfer assembly protein K12063 traC; conjugal transfer ATP-binding protein TraC D YPDSF_4117 conjugative transfer assembly protein K12064 traV; conjugal transfer pilus assembly protein TraV D YPDSF_4118 conjugative transfer assembly protein K12065 traB; conjugal transfer pilus assembly protein TraB D YPDSF_4119 conjugative transfer assembly protein K12066 traK; conjugal transfer pilus assembly protein TraK D YPDSF_4120 conjugative transfer assembly protein K12067 traE; conjugal transfer pilus assembly protein TraE D YPDSF_4121 conjugative transfer assembly protein K12068 traL; conjugal transfer pilus assembly protein TraL D YPDSF_0625 thiol:disulfide interchange protein (DsbC) K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D YPDSF_4106 conjugative transfer assembly protein K12072 traH; conjugative transfer pilus assembly protein TraH D YPDSF_4024 conserved hypothetical protein K12341 yadA; adhesin YadA D YPDSF_2308 hypothetical protein K12342 yadB_C; adhesin YadB/C D YPDSF_2307 hypothetical protein K12342 yadB_C; adhesin YadB/C D YPDSF_0180 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YPDSF_1079 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YPDSF_1078 hemolysin K11016 shlA; hemolysin D YPDSF_0209 hypothetical protein K11891 impL; type VI secretion system protein ImpL D YPDSF_1494 membrane protein K11891 impL; type VI secretion system protein ImpL D YPDSF_3119 membrane protein K11891 impL; type VI secretion system protein ImpL D YPDSF_0204 membrane protein K11892 impK; type VI secretion system protein ImpK D YPDSF_2039 OmpA family protein K11892 impK; type VI secretion system protein ImpK D YPDSF_0541 membrane protein K11892 impK; type VI secretion system protein ImpK D YPDSF_1508 membrane protein K11892 impK; type VI secretion system protein ImpK D YPDSF_3120 OmpA-family membrane protein K11892 impK; type VI secretion system protein ImpK D YPDSF_2042 hypothetical protein K11892 impK; type VI secretion system protein ImpK D YPDSF_0540 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YPDSF_1509 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YPDSF_2043 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YPDSF_0203 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YPDSF_3121 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YPDSF_2056 hypothetical protein K11895 impH; type VI secretion system protein ImpH D YPDSF_0200 hypothetical protein K11895 impH; type VI secretion system protein ImpH D YPDSF_1489 hypothetical protein K11895 impH; type VI secretion system protein ImpH D YPDSF_3129 hypothetical protein K11895 impH; type VI secretion system protein ImpH D YPDSF_0196 hypothetical protein K11896 impG; type VI secretion system protein ImpG D YPDSF_2055 hypothetical protein K11896 impG; type VI secretion system protein ImpG D YPDSF_1490 hypothetical protein K11896 impG; type VI secretion system protein ImpG D YPDSF_3130 hypothetical protein K11896 impG; type VI secretion system protein ImpG D YPDSF_2032 hypothetical protein K11897 impF; type VI secretion system protein ImpF D YPDSF_3131 hypothetical protein K11897 impF; type VI secretion system protein ImpF D YPDSF_2046 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YPDSF_1510 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YPDSF_0194 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YPDSF_0539 conserved hypothetical protein K11900 impC; type VI secretion system protein ImpC D YPDSF_3133 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YPDSF_2047 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YPDSF_0193 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YPDSF_0538 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YPDSF_1511 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YPDSF_3134 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YPDSF_2058 hypothetical protein K11902 impA; type VI secretion system protein ImpA D YPDSF_3135 hypothetical protein K11902 impA; type VI secretion system protein ImpA D YPDSF_0192 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_2045 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_0544 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_3132 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_1505 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YPDSF_0212 Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_1503 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_0546 Rhs element Vgr protein K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_2036 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_0220 Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_3127 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YPDSF_0195 hypothetical protein K11905 K11905; type VI secretion system protein D YPDSF_1487 hypothetical protein K11905 K11905; type VI secretion system protein D YPDSF_0202 lipoprotein K11906 vasD; type VI secretion system protein VasD D YPDSF_1488 hypothetical protein K11906 vasD; type VI secretion system protein VasD D YPDSF_2044 hypothetical protein K11906 vasD; type VI secretion system protein VasD D YPDSF_3122 lipoprotein K11906 vasD; type VI secretion system protein VasD D YPDSF_1504 ATPase subunit of ATP-dependent protease K11907 vasG; type VI secretion system protein VasG D YPDSF_2054 Clp ATPase K11907 vasG; type VI secretion system protein VasG D YPDSF_0205 Clp ATPase K11907 vasG; type VI secretion system protein VasG D YPDSF_3128 Clp ATPase K11907 vasG; type VI secretion system protein VasG D YPDSF_0545 Clp ATPase K11907 vasG; type VI secretion system protein VasG D YPDSF_1493 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ D YPDSF_0208 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ D YPDSF_0210 hypothetical protein K11911 vasL; type VI secretion system protein VasL D YPDSF_0211 hypothetical protein K11911 vasL; type VI secretion system protein VasL D YPDSF_1486 hypothetical protein K11911 vasL; type VI secretion system protein VasL D YPDSF_0201 hypothetical protein K11894 impI; type VI secretion system protein ImpI D YPDSF_2033 hypothetical protein K11898 impE; type VI secretion system protein ImpE D YPDSF_0207 hypothetical protein K11909 vasI; type VI secretion system protein VasI D YPDSF_2053 frimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_3492 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_1741 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_1738 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_1201 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_3493 fimbrial chaperone K07346 fimC; fimbrial chaperone protein D YPDSF_1751 chaperone protein K07346 fimC; fimbrial chaperone protein D YPDSF_1737 chaperone protein K07346 fimC; fimbrial chaperone protein D YPDSF_3494 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_2392 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein D YPDSF_1739 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_1752 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_4097 F1 capsule anchoring protein K07347 fimD; outer membrane usher protein D YPDSF_1203 fimbrial usher protein K07347 fimD; outer membrane usher protein D YPDSF_2051 hypothetical protein K07347 fimD; outer membrane usher protein D YPDSF_1749 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1753 membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1750 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1748 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_0481 outer membrane usher protein K12518 papC; outer membrane usher protein PapC D YPDSF_3785 hypothetical protein K12518 papC; outer membrane usher protein PapC D YPDSF_0482 fimbrial chaperone protein K12519 papD; chaperone protein PapD D YPDSF_3078 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D YPDSF_3838 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB D YPDSF_2824 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D YPDSF_3751 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D YPDSF_2823 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D YPDSF_3548 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D YPDSF_3079 hypothetical protein K13301 secM; secretion monitor D YPDSF_0152 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D YPDSF_3064 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D YPDSF_3431 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D YPDSF_2825 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D YPDSF_3932 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D YPDSF_3395 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D YPDSF_3394 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D YPDSF_3393 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D YPDSF_2656 sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE C 02042 Bacterial toxins [BR:ypp02042] D YPDSF_0280 insecticidal toxin K11021 tccC; insecticidal toxin complex protein TccC D YPDSF_0281 insecticidal toxin K11021 tccC; insecticidal toxin complex protein TccC D YPDSF_0766 insecticial toxin K11021 tccC; insecticidal toxin complex protein TccC D YPDSF_0832 insecticidal toxin complex K11021 tccC; insecticidal toxin complex protein TccC D YPDSF_3575 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D YPDSF_3062 membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D YPDSF_1078 hemolysin K11016 shlA; hemolysin D YPDSF_0180 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YPDSF_1079 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YPDSF_0615 hemolysin III K11068 hlyIII; hemolysin III D YPDSF_4134 murine toxin K11009 ymt; murine toxin C 02022 Two-component system [BR:ypp02022] D YPDSF_2837 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D YPDSF_2838 phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D YPDSF_2116 two-component response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D YPDSF_1815 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YPDSF_1814 response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D YPDSF_0064 osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D YPDSF_0063 transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D YPDSF_0835 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D YPDSF_0836 two-component regulatory system, response regulator protein K07661 rstA; two-component system, OmpR family, response regulator RstA D YPDSF_3833 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D YPDSF_3832 two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR D YPDSF_0621 histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D YPDSF_0620 response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D YPDSF_2202 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D YPDSF_2203 two-component system response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR D YPDSF_3557 two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D YPDSF_3556 two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR D YPDSF_1123 two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D YPDSF_1122 transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D YPDSF_1585 two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D YPDSF_0342 PAS/PAC sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D YPDSF_3176 aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D YPDSF_2105 two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D YPDSF_2106 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator D YPDSF_1163 nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D YPDSF_2146 nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D YPDSF_3373 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D YPDSF_3374 two-component system response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D YPDSF_1400 GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR D YPDSF_2476 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D YPDSF_2473 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D YPDSF_2474 two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D YPDSF_2475 two component response regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D YPDSF_2977 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D YPDSF_1261 response regulator protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D YPDSF_1200 signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D YPDSF_1199 two-component response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D YPDSF_3308 membrane protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D YPDSF_3073 two-component system response regulator K02477 K02477; two-component system, LytTR family, response regulator D YPDSF_3881 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D YPDSF_3882 nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D YPDSF_2260 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D YPDSF_2258 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D YPDSF_1781 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YPDSF_1768 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D YPDSF_1769 protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D YPDSF_3715 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA D YPDSF_3716 two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB D YPDSF_0496 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC D YPDSF_0961 response regulator K02485 rssB; two-component system, response regulator C 02035 Bacterial motility proteins [BR:ypp02035] D YPDSF_1781 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YPDSF_1780 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D YPDSF_1770 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D YPDSF_1769 protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D YPDSF_1768 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D YPDSF_1767 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D YPDSF_2466 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D YPDSF_1927 chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein D YPDSF_1772 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YPDSF_1719 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YPDSF_0031 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D YPDSF_1788 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D YPDSF_1789 methyl-accepting chemotaxis protein III (MCP-III K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D YPDSF_1771 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D YPDSF_1804 methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D YPDSF_1296 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YPDSF_0500 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH D YPDSF_1297 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YPDSF_0501 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YPDSF_1298 flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D YPDSF_1303 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D YPDSF_1304 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D YPDSF_0493 flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP D YPDSF_1305 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D YPDSF_0492 flagellar assembly protein K02420 fliQ; flagellar biosynthesis protein FliQ D YPDSF_1306 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YPDSF_0491 flagellar assembly protein K02421 fliR; flagellar biosynthesis protein FliR D YPDSF_1333 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D YPDSF_0489 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA D YPDSF_1334 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YPDSF_0490 flagellar assembly protein K02401 flhB; flagellar biosynthesis protein FlhB D YPDSF_1332 flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE D YPDSF_1295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D YPDSF_0499 putative flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D YPDSF_1301 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D YPDSF_0495 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D YPDSF_1302 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D YPDSF_0494 flagellar switch protein K02417 fliN; flagellar motor switch protein FliN D YPDSF_1294 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YPDSF_0498 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YPDSF_1318 flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI D YPDSF_0513 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D YPDSF_1326 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D YPDSF_0505 flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D YPDSF_1319 flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH D YPDSF_0512 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D YPDSF_1300 flagellar protein FliL K02415 fliL; flagellar protein FliL D YPDSF_1293 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D YPDSF_0497 flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE D YPDSF_1299 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D YPDSF_1325 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D YPDSF_0506 flagellar basal-body rod protein K02387 flgB; flagellar basal-body rod protein FlgB D YPDSF_1324 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D YPDSF_0507 flagellar basal-body rod protein K02388 flgC; flagellar basal-body rod protein FlgC D YPDSF_0508 basal-body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD D YPDSF_1323 basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D YPDSF_1321 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D YPDSF_0510 hypothetical protein K02391 flgF; flagellar basal-body rod protein FlgF D YPDSF_0511 flagellar basal-body rod protein K02392 flgG; flagellar basal-body rod protein FlgG D YPDSF_1320 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D YPDSF_1317 flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D YPDSF_0514 flagellar protein K02395 flgJ; peptidoglycan hydrolase FlgJ D YPDSF_0509 flagellar hook protein K02390 flgE; flagellar hook protein FlgE D YPDSF_1322 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D YPDSF_1316 flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1 D YPDSF_0515 flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1 D YPDSF_1315 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D YPDSF_0516 flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL D YPDSF_1328 flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN D YPDSF_0503 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN D YPDSF_2181 conserved hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D YPDSF_2182 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D YPDSF_1284 thermoregulated motility protein K02406 fliC; flagellin D YPDSF_0520 flagellin K02406 fliC; flagellin D YPDSF_0521 flagellin K02406 fliC; flagellin D YPDSF_1285 flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D YPDSF_1286 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D YPDSF_1287 FliT K02423 fliT; flagellar protein FliT D YPDSF_1785 hypothetical protein K02403 flhD; flagellar transcriptional activator FlhD D YPDSF_1784 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC D YPDSF_1283 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YPDSF_1783 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YPDSF_1782 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YPDSF_0496 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC D YPDSF_1282 alternative sigma factor regulatory protein K02425 fliZ; regulator of sigma S factor FliZ D YPDSF_0504 flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM D YPDSF_1327 negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM D YPDSF_0575 hypothetical protein K02669 pilT; twitching motility protein PilT D YPDSF_2226 fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF D YPDSF_0479 membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D YPDSF_0478 membrane protein K02279 cpaB; pilus assembly protein CpaB D YPDSF_0477 hypothetical protein K02280 cpaC; pilus assembly protein CpaC D YPDSF_0475 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D YPDSF_0474 type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D YPDSF_2053 frimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_3492 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_1741 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_1738 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_1201 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YPDSF_3493 fimbrial chaperone K07346 fimC; fimbrial chaperone protein D YPDSF_1751 chaperone protein K07346 fimC; fimbrial chaperone protein D YPDSF_1737 chaperone protein K07346 fimC; fimbrial chaperone protein D YPDSF_3494 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_2392 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein D YPDSF_1739 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_1752 outer membrane usher protein K07347 fimD; outer membrane usher protein D YPDSF_4097 F1 capsule anchoring protein K07347 fimD; outer membrane usher protein D YPDSF_1203 fimbrial usher protein K07347 fimD; outer membrane usher protein D YPDSF_2051 hypothetical protein K07347 fimD; outer membrane usher protein D YPDSF_1749 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1753 membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1750 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YPDSF_1748 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:ypp04812] D YPDSF_0272 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D YPDSF_3082 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D YPDSF_3083 cell division protein FtsA K03590 ftsA; cell division protein FtsA D YPDSF_1043 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D YPDSF_1044 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D YPDSF_1045 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D YPDSF_4008 plasmid partitioning transcription repressor K03496 parA; chromosome partitioning protein D YPDSF_4140 partitioning protein A K03496 parA; chromosome partitioning protein D YPDSF_4141 partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_4149 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPDSF_4009 plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:ypp04147] D YPDSF_2755 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG D YPDSF_2983 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YPDSF_0977 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D YPDSF_0592 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D YPDSF_0754 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D YPDSF_1058 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D YPDSF_0095 peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D YPDSF_2829 alkyl hydroperoxide reductase subunit c K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D YPDSF_3622 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YPDSF_3163 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YPDSF_0182 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YPDSF_2216 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D YPDSF_3752 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D YPDSF_0128 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D YPDSF_1836 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D YPDSF_0873 membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D YPDSF_3104 AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_1047 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YPDSF_2754 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D YPDSF_3762 phosphoribosyl transferase protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D YPDSF_2760 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D YPDSF_3535 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D YPDSF_1406 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D YPDSF_2502 pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D YPDSF_3569 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YPDSF_2560 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D YPDSF_3307 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D YPDSF_3813 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30] D YPDSF_3048 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D YPDSF_3880 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YPDSF_3391 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D YPDSF_0845 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D YPDSF_2408 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YPDSF_0599 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YPDSF_3726 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D YPDSF_2938 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_3529 pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YPDSF_1056 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D YPDSF_3818 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D YPDSF_2564 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:ypp02048] D YPDSF_1882 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D YPDSF_1881 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D YPDSF_1880 CRISPR-associated protein, Csy1 family K19127 csy1; CRISPR-associated protein Csy1 D YPDSF_1879 CRISPR-associated protein, Csy2 family K19128 csy2; CRISPR-associated protein Csy2 D YPDSF_1878 CRISPR-associated protein, Csy3 family K19129 csy3; CRISPR-associated protein Csy3 D YPDSF_1877 CRISPR-associated protein, Csy4 family K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] D YPDSF_0081 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YPDSF_1035 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YPDSF_4143 DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D YPDSF_3243 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D YPDSF_3242 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D YPDSF_0217 conserved hypothetical protein K19048 symE; toxic protein SymE D YPDSF_0235 DNA-damage-inducible protein K07473 dinJ; DNA-damage-inducible protein J D YPDSF_2080 hypothetical protein K18843 hicB; antitoxin HicB D YPDSF_2773 modulating protein YmoA (histone-like protein) K05839 hha; haemolysin expression modulating protein D YPDSF_2772 hypothetical protein K19162 tomB; hha toxicity modulator TomB D YPDSF_0793 phage shock protein C K03973 pspC; phage shock protein C D YPDSF_0792 phage shock protein B K03970 pspB; phage shock protein B D YPDSF_4012 hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4 D YPDSF_4011 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D YPDSF_1291 hypothetical protein K07341 doc; death on curing protein D YPDSF_0633 hypothetical protein K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin D YPDSF_0634 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D YPDSF_3257 hypothetical protein K19334 tabA; biofilm protein TabA D YPDSF_1951 hypothetical protein K19334 tabA; biofilm protein TabA D YPDSF_1861 hypothetical protein K12148 bssS; biofilm regulator BssS D YPDSF_3082 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D YPDSF_0272 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D YPDSF_0454 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D YPDSF_0450 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D YPDSF_2092 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YPDSF_0619 hypothetical protein K19168 cptA; toxin CptA D YPDSF_0618 hypothetical protein K09159 cptB; antitoxin CptB D YPDSF_2241 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YPDSF_0993 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:ypp04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:ypp04090] C 01504 Antimicrobial resistance genes [BR:ypp01504] D YPDSF_0046 multidrug translocase K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D YPDSF_1123 two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D YPDSF_1122 transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D YPDSF_1815 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YPDSF_1814 response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D YPDSF_3293 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_2767 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YPDSF_3292 multidrug efflux protein K18138 acrB; multidrug efflux pump D YPDSF_2768 multidrug efflux protein K18138 acrB; multidrug efflux pump D YPDSF_3291 outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D YPDSF_2723 regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D YPDSF_0445 ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YPDSF_2284 outer membrane porin C protein K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:ypp00536] D YPDSF_1902 hemolysin K15125 fhaB; filamentous hemagglutinin D YPDSF_0386 adhesin K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ypp00537] D YPDSF_0845 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins [BR:ypp03200] D YPDSF_1028 prophage endopeptidase K14744 rzpD; prophage endopeptidase [EC:3.4.-.-] C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:ypp03100] D YPDSF_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YPDSF_R0076 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YPDSF_R0044 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YPDSF_R0061 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0082 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0068 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0069 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YPDSF_R0018 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YPDSF_R0025 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YPDSF_R0026 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YPDSF_R0029 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YPDSF_R0084 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YPDSF_R0028 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YPDSF_R0020 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D YPDSF_R0057 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YPDSF_R0058 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YPDSF_R0060 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YPDSF_R0032 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0087 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0096 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0107 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YPDSF_R0099 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YPDSF_R0012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YPDSF_R0021 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YPDSF_R0092 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YPDSF_R0081 tRNA-His K14226 tRNA-His; tRNA His D YPDSF_R0002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YPDSF_R0077 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YPDSF_R0091 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0056 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0071 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0080 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0070 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0019 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YPDSF_R0040 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0053 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0052 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0022 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0051 pseudogene K14229 tRNA-Lys; tRNA Lys D YPDSF_R0050 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YPDSF_R0055 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0059 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0008 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0035 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0036 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0037 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0090 tRNA-Met K14230 tRNA-Met; tRNA Met D YPDSF_R0010 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D YPDSF_R0093 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D YPDSF_R0073 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YPDSF_R0079 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YPDSF_R0046 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YPDSF_R0027 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0067 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0048 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0016 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YPDSF_R0098 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YPDSF_R0006 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YPDSF_R0047 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YPDSF_R0101 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YPDSF_R0083 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D YPDSF_R0015 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D YPDSF_R0100 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D YPDSF_R0041 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0043 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0042 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0013 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0014 tRNA-Val K14237 tRNA-Val; tRNA Val D YPDSF_R0102 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D YPDSF_R0108 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0033 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0097 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YPDSF_R0031 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0064 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0106 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0075 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0086 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YPDSF_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0105 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0074 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0094 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0063 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0030 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YPDSF_R0062 ffs; SRP RNA K01983 ffs; SRP RNA D YPDSF_R0007 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D YPDSF_R0054 ssrA; ssrA K15035 ssrA; transfer-messenger RNA D YPDSF_R0045 tke1 RNA K15841 glmY; small regulatory RNA GlmY D YPDSF_R0034 regulatory RNA csrB K18515 csrB; small regulatory RNA CsrB D YPDSF_R0103 regulatory RNA CsrC K18516 csrC; small regulatory RNA CsrC D YPDSF_R0104 Spot 42 RNA K18527 spf; small regulatory RNA Spot 42 # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D YPDSF_1949 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D YPDSF_0460 aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D YPDSF_2695 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D YPDSF_1636 aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D YPDSF_0897 hypothetical protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D YPDSF_1420 dehydrogenase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-] D YPDSF_2087 ion channel protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D YPDSF_1914 zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-] D YPDSF_3009 Zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-] D YPDSF_3664 oxidoreductase K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29] D YPDSF_1876 oxidoreductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D YPDSF_0376 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D YPDSF_1863 sarcosine oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-] D YPDSF_3653 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D YPDSF_1793 Zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D YPDSF_0452 modulator of drug activity K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D YPDSF_0823 acyl carrier protein phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D YPDSF_3574 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D YPDSF_0976 hypothetical protein K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D YPDSF_0246 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D YPDSF_0353 hypothetical protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D YPDSF_0269 hypothetical protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D YPDSF_3039 cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17] D YPDSF_3018 cytochrome C peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D YPDSF_2169 bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D YPDSF_0803 thiol peroxidase (atypical 2-Cys peroxiredoxin) K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D YPDSF_2130 hypothetical protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D YPDSF_3321 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D YPDSF_0984 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D YPDSF_2252 flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D YPDSF_1905 dioxygenase alpha subunit K22443 cntA; carnitine monooxygenase subunit [EC:1.14.13.239] D YPDSF_1904 dioxygenase beta subunit K22444 cntB; carnitine monooxygenase subunit [EC:1.14.13.239] D YPDSF_1340 ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D YPDSF_2946 cell division protein SufI K14588 cueO; cuproxidase [EC:1.16.3.4] D YPDSF_3815 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D YPDSF_2174 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D YPDSF_3265 ribonucleoside-triphosphate reductase class III activase subunit K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D YPDSF_2314 pyruvate formate-lyase 1 activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D YPDSF_2338 oxidoreductase K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D YPDSF_3003 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D YPDSF_0757 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D YPDSF_1921 putative trans-aconitate methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D YPDSF_1173 tellurite resistance protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D YPDSF_3683 coproporphyrinogen III oxidase, anaerobic K21936 chuW; anaerobilin synthase [EC:2.1.1.342] D YPDSF_2637 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D YPDSF_3286 acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D YPDSF_0020 acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D YPDSF_3254 acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D YPDSF_3491 hypothetical protein K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] D YPDSF_2324 leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D YPDSF_0395 hypothetical protein K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333] D YPDSF_1887 hypothetical protein K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D YPDSF_2907 hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D YPDSF_1703 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D YPDSF_2861 thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D YPDSF_2460 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D YPDSF_0739 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D YPDSF_0437 glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D YPDSF_0737 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D YPDSF_0175 isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D YPDSF_2576 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D YPDSF_0924 hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D YPDSF_2012 phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D YPDSF_2420 membrane protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D YPDSF_3363 diguanylate cyclase/phosphodiesterase K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52] D YPDSF_0672 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-] D YPDSF_0684 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-] D YPDSF_2152 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-] D YPDSF_0583 endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D YPDSF_3199 metalloenzyme K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D YPDSF_3392 Sec-independent protein translocase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D YPDSF_1840 deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D YPDSF_2616 hypothetical protein K01175 ybfF; esterase [EC:3.1.-.-] D YPDSF_2853 hypothetical protein K11750 frsA; esterase FrsA [EC:3.1.-.-] D YPDSF_3364 Cellulase K20542 bcsZ; endoglucanase [EC:3.2.1.4] D YPDSF_1029 phage lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D YPDSF_0660 galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89] D YPDSF_1765 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YPDSF_0164 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D YPDSF_1403 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D YPDSF_1592 hypothetical protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105] D YPDSF_1345 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D YPDSF_0307 hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D YPDSF_0436 hypothetical protein K18446 ygiF; triphosphatase [EC:3.6.1.25] D YPDSF_2783 haloacid dehalogenase-like hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-] D YPDSF_2140 hypothetical protein K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-] D YPDSF_1854 hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D YPDSF_3900 hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D YPDSF_2459 class II aldolase-family protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D YPDSF_0902 transaldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-] D YPDSF_3606 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D YPDSF_0688 hypothetical protein K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21] D YPDSF_1685 cysteine desulfurase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-] D YPDSF_1267 hypothetical protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24] D YPDSF_3646 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D YPDSF_2457 hypothetical protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D YPDSF_3568 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D YPDSF_0893 integral membrane protein K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D YPDSF_0891 iron-sulfur binding NADH dehydrogenase K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D YPDSF_0890 iron-sulfur protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D YPDSF_2867 NADH-ubiquinone oxidoreductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D YPDSF_2866 NADH-ubiquinone oxidoreductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D YPDSF_2865 Na+-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D YPDSF_2864 Na+-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D YPDSF_2863 Na+-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D YPDSF_1189 Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D YPDSF_2862 NADH-uniquinone oxidoreductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D YPDSF_3437 P-type cation-translocating membrane ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D YPDSF_1786 Mg(2+) transport ATPase protein B K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D YPDSF_2960 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D YPDSF_0033 formate dehydrogenase K02379 fdhD; FdhD protein D YPDSF_2236 adrenodoxin family ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D YPDSF_2481 iron-sulphur binding protein K11107 yfaE; ferredoxin D YPDSF_0894 hypothetical protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D YPDSF_0895 membrane protein K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D YPDSF_0889 membrane protein K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D YPDSF_3630 4Fe-4S ferrodoxin K05796 hydN; electron transport protein HydN D YPDSF_3904 flavoprotein K06205 mioC; MioC protein D YPDSF_0623 flavodoxin 2 K03840 fldB; flavodoxin II D YPDSF_2240 NifU family protein K04488 iscU; nitrogen fixation protein NifU and related proteins D YPDSF_0301 cytochrome K15536 cybC; soluble cytochrome b562 D YPDSF_3040 cytochrome B562 K15536 cybC; soluble cytochrome b562 D YPDSF_2144 periplasmic nitrate reductase chaperone NapD K02570 napD; periplasmic nitrate reductase NapD D YPDSF_2145 periplasmic nitrate reductase maturation protein NapF K02572 napF; ferredoxin-type protein NapF D YPDSF_2619 flavodoxin 1 K03839 fldA; flavodoxin I D YPDSF_2141 periplasmic nitrate reductase subunit NapC K02569 napC; cytochrome c-type protein NapC C 99983 Lipid metabolism D YPDSF_3592 acyl-CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism D YPDSF_1622 NrdI-like protein K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D YPDSF_2099 membrane protein K06203 cysZ; CysZ protein D YPDSF_1651 hypothetical protein K08234 yaeR; glyoxylase I family protein D YPDSF_0805 hypothetical protein K14054 mpaA; murein peptide amidase A D YPDSF_0574 hypothetical protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D YPDSF_0910 membrane protein K08992 lapA; lipopolysaccharide assembly protein A D YPDSF_0909 hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B D YPDSF_2313 hypothetical protein K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D YPDSF_3470 protoheme IX biogenesis protein K02498 hemY; HemY protein D YPDSF_3396 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D YPDSF_3397 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D YPDSF_0440 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D YPDSF_3287 lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D YPDSF_3891 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism D YPDSF_0457 cell division protein SufI K04753 sufI; suppressor of ftsI C 99999 Others D YPDSF_0354 membrane protein K15977 K15977; putative oxidoreductase D YPDSF_2908 acetyltransferase K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D YPDSF_0297 ribonuclease inhibitor K03623 yhcO; ribonuclease inhibitor D YPDSF_2330 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D YPDSF_2659 cold shock protein E (CspE) K03704 cspA; cold shock protein D YPDSF_1617 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D YPDSF_0250 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D YPDSF_1377 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D YPDSF_0251 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D YPDSF_1791 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D YPDSF_2297 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D YPDSF_3735 regulator of sigma D K07740 rsd; regulator of sigma D D YPDSF_2778 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D YPDSF_0061 hypothetical protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D YPDSF_0816 heat shock protein K03668 hslJ; heat shock protein HslJ D YPDSF_2328 hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D YPDSF_2794 Trigger factor K03545 tig; trigger factor D YPDSF_0268 membrane protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D YPDSF_0038 formate dehydrogenase formation protein K02380 fdhE; FdhE protein D YPDSF_1608 urease accessory protein K03187 ureE; urease accessory protein D YPDSF_1607 urease accessory protein K03188 ureF; urease accessory protein D YPDSF_1606 urease accessory protein K03189 ureG; urease accessory protein D YPDSF_1605 hypothetical protein K03190 ureD; urease accessory protein D YPDSF_2596 SsrA-binding protein K03664 smpB; SsrA-binding protein D YPDSF_3514 magnesium chelatase family protein K07391 comM; magnesium chelatase family protein D YPDSF_1718 hypothetical protein K07396 K07396; putative protein-disulfide isomerase D YPDSF_0415 hypothetical protein K07396 K07396; putative protein-disulfide isomerase D YPDSF_0101 hypothetical protein K07397 yhfA; putative redox protein D YPDSF_0054 hypothetical protein K07400 nfuA; Fe/S biogenesis protein NfuA D YPDSF_3712 type III secretion apparatus K18984 ssaE; secretion system chaperone SsaE C 99976 Replication and repair D YPDSF_2774 6-O-methylguanine DNA methyltransferase family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D YPDSF_1681 exodeoxyribonuclease IX K01146 xni; protein Xni D YPDSF_3856 DNA repair protein K03630 radC; DNA repair protein RadC D YPDSF_3399 DNA recombination protein K09760 rmuC; DNA recombination protein RmuC D YPDSF_2335 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D YPDSF_0348 hypothetical protein K07460 yraN; putative endonuclease D YPDSF_3285 hypothetical protein K07461 K07461; putative endonuclease D YPDSF_0165 hypothetical protein K04096 smf; DNA processing protein D YPDSF_0426 hypothetical protein K07474 xtmA; phage terminase small subunit D YPDSF_0425 hypothetical protein K07474 xtmA; phage terminase small subunit D YPDSF_2317 Recombination protein MgsA K07478 ycaJ; putative ATPase D YPDSF_0167 DNA-binding protein K07479 yrdD; putative DNA topoisomerase D YPDSF_0635 plasmid and phage DNA primase K06919 K06919; putative DNA primase/helicase D YPDSF_3635 transposase K07480 insB; insertion element IS1 protein InsB D YPDSF_0550 insertion sequence protein K07480 insB; insertion element IS1 protein InsB D YPDSF_4004 hypothetical protein K07483 K07483; transposase D YPDSF_4028 hypothetical protein K07483 K07483; transposase D YPDSF_3788 insertion element IS1661 DNA-binding protein K07483 K07483; transposase D YPDSF_4026 hypothetical protein K07483 K07483; transposase D YPDSF_0198 insertion element IS1661 DNA-binding protein K07483 K07483; transposase D YPDSF_3948 hypothetical protein K07484 K07484; transposase D YPDSF_4131 transposase K07486 K07486; transposase D YPDSF_0549 insertion sequence protein K07489 K07489; transposase D YPDSF_0537 insertion element protein K07489 K07489; transposase D YPDSF_0129 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0480 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_4068 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_3584 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_3100 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2939 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2789 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2580 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2431 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2271 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2214 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2176 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2165 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2093 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1845 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1677 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1548 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1540 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1455 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1388 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1008 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0916 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0600 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0370 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0330 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0249 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_4065 transposase K07491 rayT; REP-associated tyrosine transposase D YPDSF_3810 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_3471 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_3427 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_3333 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_3098 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2922 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2916 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2873 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2822 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2813 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2597 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2524 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2387 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2326 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2289 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2261 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2104 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1838 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1330 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1090 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1009 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0833 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0800 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0789 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0753 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0590 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_2710 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_0685 transposase K07491 rayT; REP-associated tyrosine transposase D YPDSF_2533 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YPDSF_1415 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_0705 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_0940 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_0959 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_0964 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_1135 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_1155 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_2493 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_2689 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_0043 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_2212 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_3103 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_4104 transposase K07493 K07493; putative transposase D YPDSF_4123 transposase K07493 K07493; putative transposase D YPDSF_3990 transposase K07493 K07493; putative transposase D YPDSF_1206 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_1721 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_1826 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_1862 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_2050 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_3892 transposase for the IS285 insertion element K07493 K07493; putative transposase D YPDSF_1243 hypothetical protein K07493 K07493; putative transposase D YPDSF_3956 transposase ORFA K07497 K07497; putative transposase D YPDSF_2614 IS1400 transposase A K07497 K07497; putative transposase D YPDSF_4015 hypothetical protein K07497 K07497; putative transposase D YPDSF_3725 Helix-turn-helix, Fis-type K07497 K07497; putative transposase D YPDSF_3241 transposase K07497 K07497; putative transposase D YPDSF_4005 hypothetical protein K07497 K07497; putative transposase D YPDSF_1111 integrase core domain protein K07497 K07497; putative transposase D YPDSF_3724 transposase K07497 K07497; putative transposase D YPDSF_4019 transposase K07497 K07497; putative transposase D YPDSF_4020 transposase K07497 K07497; putative transposase D YPDSF_3955 transposase K07497 K07497; putative transposase D YPDSF_4023 hypothetical protein K07497 K07497; putative transposase D YPDSF_3947 conserved hypothetical protein K07497 K07497; putative transposase D YPDSF_0047 transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YPDSF_0197 transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YPDSF_0522 transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YPDSF_3300 transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YPDSF_3541 transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YPDSF_3789 transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YPDSF_0006 transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YPDSF_1254 transposase K07497 K07497; putative transposase D YPDSF_3954 transposase K07497 K07497; putative transposase D YPDSF_1038 hypothetical protein K14059 int; integrase C 99979 Viral proteins C 99998 Others D YPDSF_0791 phage shock protein A K03969 pspA; phage shock protein A D YPDSF_0794 phage shock protein K03971 pspD; phage shock protein D D YPDSF_2758 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D YPDSF_3472 permease protein K03293 TC.AAT; amino acid transporter, AAT family D YPDSF_1906 BCCT-family transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D YPDSF_0782 proton dependent peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D YPDSF_2110 permease K03307 TC.SSS; solute:Na+ symporter, SSS family D YPDSF_2835 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D YPDSF_1629 permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D YPDSF_3198 Na+ dependent nucleoside transporter-family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family D YPDSF_0014 membrane protein K07085 K07085; putative transport protein D YPDSF_2370 TrkA, Potassium channel-family protein K07085 K07085; putative transport protein C 99978 Cell growth D YPDSF_0938 intracellular septation protein K06190 ispZ; intracellular septation protein D YPDSF_3440 lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB D YPDSF_3580 hypothetical protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D YPDSF_0987 hypothetical protein K06415 spoVR; stage V sporulation protein R D YPDSF_3842 membrane protein K22719 envC; murein hydrolase activator C 99993 Cell motility D YPDSF_1834 lipoprotein K07337 K07337; penicillin-binding protein activator D YPDSF_1537 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins D YPDSF_1740 chaperone protein K15540 ecpD; chaperone protein EcpD D YPDSF_2052 pili chaperone protein K15540 ecpD; chaperone protein EcpD D YPDSF_1678 Syd protein K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D YPDSF_2932 membrane-bound sensory transducer in beta-lactamase regulation K03807 ampE; AmpE protein D YPDSF_3674 tellurite resistance protein K05792 terA; tellurite resistance protein TerA D YPDSF_3670 tellurium resistance protein K05795 terD; tellurium resistance protein TerD D YPDSF_3671 tellurium resistance protein K05795 terD; tellurium resistance protein TerD D YPDSF_3675 tellurium resistance protein K05791 terZ; tellurium resistance protein TerZ D YPDSF_1744 activator of osmoprotectant transporter ProP K03607 proQ; ProP effector D YPDSF_3335 universal stress protein A K06149 uspA; universal stress protein A D YPDSF_0842 stress protein K14055 uspE; universal stress protein E D YPDSF_3401 carbon starvation protein K06200 cstA; carbon starvation protein D YPDSF_0900 carbon starvation protein A K06200 cstA; carbon starvation protein D YPDSF_3879 GTPase K06207 typA; GTP-binding protein D YPDSF_1165 phosphate starvation-inducible protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D YPDSF_2633 hypothetical protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D YPDSF_0980 hypothetical protein K07180 prkA; serine protein kinase D YPDSF_0435 hypothetical protein K07184 ygiM; SH3 domain protein D YPDSF_3193 membrane protein K07186 smp; membrane protein D YPDSF_2805 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D YPDSF_2318 outer-membrane lipoproteins carrier protein K03634 lolA; outer membrane lipoprotein carrier protein D YPDSF_1103 lipoprotein K02494 lolB; outer membrane lipoprotein LolB D YPDSF_2017 VacJ lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D YPDSF_3483 lipopolysaccharide biosynthesis protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE D YPDSF_0773 lipoprotein K06077 slyB; outer membrane lipoprotein SlyB D YPDSF_0253 outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB D YPDSF_1659 cationic 19 kDa outer membrane protein precursor K06142 hlpA; outer membrane protein D YPDSF_3004 lipoprotein K06194 nlpD; lipoprotein NlpD D YPDSF_3298 lipoprotein NlpI K05803 nlpI; lipoprotein NlpI D YPDSF_0933 hypothetical protein K07275 ompW; outer membrane protein D YPDSF_3070 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein D YPDSF_2796 lipoprotein K07286 yajG; uncharacterized lipoprotein D YPDSF_1450 hypothetical protein K07289 asmA; AsmA protein D YPDSF_3353 hypothetical protein K07290 yhjG; AsmA family protein D YPDSF_2722 membrane protein K07340 ybbJ; inner membrane protein D YPDSF_1478 hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein D YPDSF_1865 membrane protein K11744 tqsA; AI-2 transport protein TqsA D YPDSF_0905 osmotically inducible lipoprotein B precursor K04062 osmB; osmotically inducible lipoprotein OsmB D YPDSF_0622 membrane protein K06143 creD; inner membrane protein D YPDSF_2022 cytochrome c-type biogenesis protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D YPDSF_2019 cytochrome c-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D YPDSF_2225 DNA-binding protein K15539 rodZ; cytoskeleton protein RodZ D YPDSF_0291 membrane protein K21695 aaeX; protein AaeX D YPDSF_0377 membrane protein K21908 hdeD; membrane protein HdeD C 99994 Others D YPDSF_3922 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D YPDSF_0130 bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin D YPDSF_3673 tellurite resistance protein K05793 terB; tellurite resistance protein TerB D YPDSF_3672 tellurium resistance protein K05794 terC; tellurite resistance protein TerC D YPDSF_3627 cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D YPDSF_1074 copper homeostasis protein K06201 cutC; copper homeostasis protein D YPDSF_3271 phosphonates transport ATP-binding protein K05781 phnK; putative phosphonate transport system ATP-binding protein D YPDSF_3143 ApaG protein K06195 apaG; ApaG protein D YPDSF_3464 frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D YPDSF_3688 hemin transport protein K07225 hmuS; putative hemin transport protein D YPDSF_3684 heme utilization protein HuvX K07227 chuX; heme iron utilization protein D YPDSF_2765 hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur B B 09194 Poorly characterized C 99996 General function prediction only D YPDSF_1990 colicin V production protein K03558 cvpA; membrane protein required for colicin V production D YPDSF_2274 paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B D YPDSF_1081 oxidoreductase K03810 mviM; virulence factor D YPDSF_2910 lipoprotein K05811 yfiM; putative lipoprotein D YPDSF_3202 osmotically inducible protein Y K04065 osmY; hyperosmotically inducible periplasmic protein D YPDSF_1086 hypothetical protein K04477 ycdX; putative hydrolase D YPDSF_1566 hypothetical protein K06866 grcA; autonomous glycyl radical cofactor D YPDSF_2970 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein D YPDSF_0744 FeS assembly scaffold SufA K05997 sufA; Fe-S cluster assembly protein SufA D YPDSF_0745 Iron-regulated ABC transporter membrane component SufB K09014 sufB; Fe-S cluster assembly protein SufB D YPDSF_0747 Iron-regulated ABC transporter permease protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D YPDSF_1731 membrane protein K07038 K07038; inner membrane protein D YPDSF_2150 membrane protein K07038 K07038; inner membrane protein D YPDSF_3351 membrane protein K07058 K07058; membrane protein D YPDSF_3877 tRNA-processing RNAse BN K07058 K07058; membrane protein D YPDSF_3624 membrane protein K07113 fxsA; UPF0716 protein FxsA D YPDSF_0749 Cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE D YPDSF_1686 hypothetical protein K02426 sufE; cysteine desulfuration protein SufE D YPDSF_1866 hypothetical protein K07146 K07146; UPF0176 protein D YPDSF_1811 hypothetical protein K07153 hflD; high frequency lysogenization protein D YPDSF_1448 ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF D YPDSF_2028 hypothetical protein K03744 lemA; LemA protein D YPDSF_0119 hypothetical protein K03745 slyX; SlyX protein D YPDSF_0166 hypothetical protein K03747 smg; Smg protein D YPDSF_3177 hypothetical protein K05805 creA; CreA protein D YPDSF_0584 hypothetical protein K02742 sprT; SprT protein D YPDSF_1991 membrane protein K03749 dedD; DedD protein D YPDSF_0080 conserved hypothetical membrane protein K03112 damX; DamX protein D YPDSF_1464 hypothetical protein K03748 sanA; SanA protein D YPDSF_1994 membrane protein K03975 dedA; membrane-associated protein D YPDSF_1746 membrane protein K03808 pqiA; paraquat-inducible protein A D YPDSF_2275 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D YPDSF_1940 membrane protein K05594 elaB; ElaB protein D YPDSF_0796 membrane protein K08990 ycjF; putative membrane protein D YPDSF_3433 membrane protein K08993 yhhL; putative membrane protein D YPDSF_0962 hypothetical protein K09858 K09858; SEC-C motif domain protein D YPDSF_2775 lipoprotein K09914 K09914; putative lipoprotein D YPDSF_0190 maltose operon periplasmic protein K05775 malM; maltose operon periplasmic protein D YPDSF_0183 membrane protein K13256 psiE; protein PsiE D YPDSF_2030 hypothetical protein K06193 phnA; protein PhnA C 99997 Function unknown D YPDSF_1564 phospholipase A accessory protein K06867 K06867; uncharacterized protein D YPDSF_3021 hypothetical protein K06867 K06867; uncharacterized protein D YPDSF_0673 regulatory protein K06871 K06871; uncharacterized protein D YPDSF_1480 heme-binding protein K06871 K06871; uncharacterized protein D YPDSF_2151 sulfatase modifier protein K06871 K06871; uncharacterized protein D YPDSF_2070 hypothetical protein K06887 K06887; uncharacterized protein D YPDSF_1255 hypothetical protein K06887 K06887; uncharacterized protein D YPDSF_2684 membrane protein K06887 K06887; uncharacterized protein D YPDSF_2436 hypothetical protein K06887 K06887; uncharacterized protein D YPDSF_1118 hypothetical protein K06889 K06889; uncharacterized protein D YPDSF_3588 hypothetical protein K06889 K06889; uncharacterized protein D YPDSF_2534 membrane protein K06890 K06890; uncharacterized protein D YPDSF_1248 hypothetical protein K06903 W; Bacteriophage baseplate protein W D YPDSF_0795 hypothetical protein K06918 K06918; uncharacterized protein D YPDSF_4142 DNA-binding protein K06921 K06921; uncharacterized protein D YPDSF_1531 hypothetical protein K06929 K06929; uncharacterized protein D YPDSF_0770 hypothetical protein K06938 K06938; uncharacterized protein D YPDSF_2410 hypothetical protein K06940 K06940; uncharacterized protein D YPDSF_1732 transport protein K06956 K06956; uncharacterized protein D YPDSF_1831 hypothetical protein K07000 K07000; uncharacterized protein D YPDSF_0449 hypothetical protein K07000 K07000; uncharacterized protein D YPDSF_2434 membrane protein K07014 K07014; uncharacterized protein D YPDSF_0105 hypothetical protein K07019 K07019; uncharacterized protein D YPDSF_3164 membrane protein K07034 K07034; uncharacterized protein D YPDSF_2163 membrane protein K07054 K07054; uncharacterized protein D YPDSF_0117 hypothetical protein K07070 K07070; uncharacterized protein D YPDSF_1983 hypothetical protein K07071 K07071; uncharacterized protein D YPDSF_2007 membrane protein K07090 K07090; uncharacterized protein D YPDSF_3577 hypothetical protein K07109 K07109; uncharacterized protein D YPDSF_3696 integral membrane protein K07112 K07112; uncharacterized protein D YPDSF_0349 hypothetical protein K07121 K07121; uncharacterized protein D YPDSF_1134 hypothetical protein K07126 K07126; uncharacterized protein D YPDSF_4057 ABC transporter ATP-binding protein K07128 K07128; uncharacterized protein D YPDSF_4055 hypothetical protein K07128 K07128; uncharacterized protein D YPDSF_1071 membrane protein K07136 K07136; uncharacterized protein D YPDSF_0341 hypothetical protein K07139 K07139; uncharacterized protein D YPDSF_2278 iron-sulfur binding protein K07140 K07140; MOSC domain-containing protein D YPDSF_1471 hypothetical protein K07148 K07148; uncharacterized protein D YPDSF_3933 Protein of unknown function DUF37 K08998 K08998; uncharacterized protein D YPDSF_0571 hypothetical protein K09131 K09131; uncharacterized protein D YPDSF_2653 hypothetical protein K09158 K09158; uncharacterized protein D YPDSF_1039 hypothetical protein K09160 K09160; uncharacterized protein D YPDSF_1971 hypothetical protein K09161 K09161; uncharacterized protein D YPDSF_2138 hypothetical protein K09768 K09768; uncharacterized protein D YPDSF_0942 hypothetical protein K09780 K09780; uncharacterized protein D YPDSF_0981 hypothetical protein K09786 K09786; uncharacterized protein D YPDSF_2761 hypothetical protein K09790 K09790; uncharacterized protein D YPDSF_2296 hypothetical protein K09791 K09791; uncharacterized protein D YPDSF_3843 hypothetical protein K09798 K09798; uncharacterized protein D YPDSF_3844 conserved hypothetical protein K09798 K09798; uncharacterized protein D YPDSF_2594 hypothetical protein K09801 K09801; uncharacterized protein D YPDSF_1416 hypothetical protein K09802 K09802; uncharacterized protein D YPDSF_1246 conserved hypothetical protein K09803 K09803; uncharacterized protein D YPDSF_0596 hypothetical protein K09807 K09807; uncharacterized protein D YPDSF_2334 virulence factor K09824 virK; uncharacterized protein D YPDSF_2860 hypothetical protein K05952 K05952; uncharacterized protein D YPDSF_2273 lipoprotein protein K09857 K09857; uncharacterized protein D YPDSF_3171 hypothetical protein K09861 K09861; uncharacterized protein D YPDSF_2923 hypothetical protein K09862 K09862; uncharacterized protein D YPDSF_3730 hypothetical protein K09891 K09891; uncharacterized protein D YPDSF_3884 hypothetical protein K09894 K09894; uncharacterized protein D YPDSF_0603 hypothetical protein K09895 K09895; uncharacterized protein D YPDSF_3889 hypothetical protein K09896 K09896; uncharacterized protein D YPDSF_3515 hypothetical protein K09897 K09897; uncharacterized protein D YPDSF_0104 hypothetical protein K09898 K09898; uncharacterized protein D YPDSF_1972 hypothetical protein K09899 K09899; uncharacterized protein D YPDSF_0948 hypothetical protein K09901 K09901; uncharacterized protein D YPDSF_1042 hypothetical protein K09902 K09902; uncharacterized protein D YPDSF_2433 hypothetical protein K09904 K09904; uncharacterized protein D YPDSF_1075 hypothetical protein K09907 K09907; uncharacterized protein D YPDSF_0332 membrane protein K09908 K09908; uncharacterized protein D YPDSF_1532 hypothetical protein K09909 K09909; uncharacterized protein D YPDSF_2941 hypothetical protein K09910 K09910; uncharacterized protein D YPDSF_1541 hypothetical protein K09911 K09911; uncharacterized protein D YPDSF_1401 hypothetical protein K09912 K09912; uncharacterized protein D YPDSF_0975 hypothetical protein K09916 K09916; uncharacterized protein D YPDSF_1349 hypothetical protein K09917 K09917; uncharacterized protein D YPDSF_1346 hypothetical protein K09918 K09918; uncharacterized protein D YPDSF_0447 hypothetical protein K09920 K09920; uncharacterized protein D YPDSF_3461 hypothetical protein K09921 K09921; uncharacterized protein D YPDSF_0564 hypothetical protein K09923 K09923; uncharacterized protein D YPDSF_3597 membrane protein K09937 K09937; uncharacterized protein D YPDSF_2204 hypothetical protein K09946 K09946; uncharacterized protein D YPDSF_2096 hypothetical protein K09954 K09954; uncharacterized protein D YPDSF_2094 hypothetical protein K09962 K09962; uncharacterized protein D YPDSF_2725 hypothetical protein K09973 K09973; uncharacterized protein D YPDSF_1148 hypothetical protein K09975 K09975; uncharacterized protein D YPDSF_0820 hypothetical protein K09978 K09978; uncharacterized protein D YPDSF_3277 hypothetical protein K09979 K09979; uncharacterized protein D YPDSF_0943 conserved hypothetical protein K09981 K09981; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 26, 2024