| Entry | T03194 |
| Org code | mdm |
| Name | Malus domestica (apple) |
| Category | Reference genome |
| Annotation | yes |
| Taxonomy | TAX: 3750 |
| Lineage | Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus |
| Brite | KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611]
KEGG organisms: plants [BR:br08613] |
| Data source | RefSeq Assembly: GCF_042453785.1 (Complete Genome)
BioProject: 1194184 |
| Keywords | Photosynthesis |
| Chromosome | 01 (RS: NC_091661)
02 (RS: NC_091662)
03 (RS: NC_091663)
04 (RS: NC_091664)
05 (RS: NC_091665)
06 (RS: NC_091666)
07 (RS: NC_091667)
08 (RS: NC_091668)
09 (RS: NC_091669)
10 (RS: NC_091670)
11 (RS: NC_091671)
12 (RS: NC_091672)
13 (RS: NC_091673)
14 (RS: NC_091674)
15 (RS: NC_091675)
16 (RS: NC_091676)
17 (RS: NC_091677)
MT; Circular (RS: NC_018554)
CP; Circular (RS: NC_061549) |
| Statistics | Number of protein genes: 39340
Number of RNA genes: 1928
|
| Created | 2014 |
| Reference | PMID: 38743633 |
| Authors | Su Y, Yang X, Wang Y, Li J, Long Q, Cao S, Wang X, Liu Z, Huang S, Chen Z, et al. |
| Title | Phased telomere-to-telomere reference genome and pangenome reveal an expansion of resistance genes during apple domestication. |
| Journal | Plant Physiol 195:2799-2814 (2024)
DOI: 10.1093/plphys/kiae258 |
| Reference | PMID: 28581499 |
| Authors | Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, et al. |
| Title | High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. |
| Journal | Nat Genet 49:1099-1106 (2017)
DOI: 10.1038/ng.3886 |
| Reference | PMID: 22469001 |
| Authors | Goremykin VV, Lockhart PJ, Viola R, Velasco R |
| Title | The mitochondrial genome of Malus domestica and the import-driven hypothesis of mitochondrial genome expansion in seed plants. |
| Journal | Plant J 71:615-26 (2012)
DOI: 10.1111/j.1365-313X.2012.05014.x |
Malus domestica (apple)