| Entry | T11342 |
| Org code | carb |
| Name | Coffea arabica (coffee) |
| Annotation | yes |
| Taxonomy | TAX: 13443 |
| Lineage | Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea |
| Brite | KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611]
KEGG organisms: plants [BR:br08613] |
| Data source | RefSeq Assembly: GCF_036785885.1 (Chromosome)
BioProject: 1219589 |
| Keywords | Photosynthesis |
| Chromosome | 1c (RS: NC_092310)
1e (RS: NC_092311)
2c (RS: NC_092312)
2e (RS: NC_092313)
3c (RS: NC_092314)
3e (RS: NC_092315)
4c (RS: NC_092316)
4e (RS: NC_092317)
5e (RS: NC_092318)
5c (RS: NC_092319)
6c (RS: NC_092320)
6e (RS: NC_092321)
7c (RS: NC_092322)
7e (RS: NC_092323)
8e (RS: NC_092324)
8c (RS: NC_092325)
9c (RS: NC_092326)
9e (RS: NC_092327)
10e (RS: NC_092328)
10c (RS: NC_092329)
11c (RS: NC_092330)
11e (RS: NC_092331)
Pltd; Circular (RS: NC_008535) |
| Statistics | Number of protein genes: 50280
Number of RNA genes: 17333
|
| Created | 2025 |
| Reference | PMID: 38622339 |
| Authors | Salojarvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, et al. |
| Title | The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. |
| Journal | Nat Genet 56:721-731 (2024)
DOI: 10.1038/s41588-024-01695-w |
| Reference | PMID: 17309688 |
| Authors | Samson N, Bausher MG, Lee SB, Jansen RK, Daniell H |
| Title | The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms. |
| Journal | Plant Biotechnol J 5:339-53 (2007)
DOI: 10.1111/j.1467-7652.2007.00245.x |
Coffea arabica (coffee)