KEGG PATHWAY: Biosynthesis of secondary metabolites

Carbohydrate metabolism

Other carbohydrate metabolism
- M00114 Ascorbate biosynthesis, plants
- M00565 Trehalose biosynthesis
- M00012 Glyoxylate cycle
- M00532 Photorespiration

Lipid metabolism

Sterol biosynthesis
- M00102 Ergocalciferol biosynthesis
- M00917 Phytosterol biosynthesis
Lipid metabolism
- M00113 Jasmonic acid biosynthesis

Amino acid metabolism

Serine and threonine metabolism
- M00018 Threonine biosynthesis
Cysteine and methionine metabolism
- M00021 Cysteine biosynthesis
- M00368 Ethylene biosynthesis
Branched-chain amino acid metabolism
- M00019 Valine/isoleucine biosynthesis
- M00432 Leucine biosynthesis
Lysine metabolism
- M00527 Lysine biosynthesis, DAP aminotransferase pathway
Arginine and proline metabolism
- M00978 Ornithine-ammonia cycle
Histidine metabolism
- M00026 Histidine biosynthesis
Aromatic amino acid metabolism
- M00022 Shikimate pathway
- M00023 Tryptophan biosynthesis
- M00024 Phenylalanine biosynthesis
- M00910 Phenylalanine biosynthesis
- M00040 Tyrosine biosynthesis
- M00936 Melatonin biosynthesis, plants
Other amino acid metabolism
- M00369 Cyanogenic glycoside biosynthesis

Glycan metabolism

Nucleotide sugar biosynthesis
- M00793 dTDP-L-Rha biosynthesis

Metabolism of cofactors and vitamins

Cofactor and vitamin metabolism
- M00125 Riboflavin biosynthesis, plants and bacteria
- M00119 Pantothenate biosynthesis
- M00846 Siroheme biosynthesis
- M00868 Heme biosynthesis, animals and fungi
- M00121 Heme biosynthesis, plants and bacteria
- M00847 Heme biosynthesis, archaea
- M00117 Ubiquinone biosynthesis, prokaryotes
- M00989 Ubiquinone biosynthesis, O2-independent, prokaryotes
- M00116 Menaquinone biosynthesis
- M00932 Phylloquinone biosynthesis
- M00112 Tocopherol/tocotorienol biosynthesis
- M00933 Plastoquinone biosynthesis

Biosynthesis of terpenoids and polyketides

Terpenoid backbone biosynthesis
- M00095 C5 isoprenoid biosynthesis, mevalonate pathway
- M00849 C5 isoprenoid biosynthesis, mevalonate pathway, archaea
- M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway
- M00364 C10-C20 isoprenoid biosynthesis, bacteria
- M00365 C10-C20 isoprenoid biosynthesis, archaea
- M00366 C10-C20 isoprenoid biosynthesis, plants
- M00367 C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Terpenoid biosynthesis
- M01038 Staphyloxanthin biosynthesis, bacteria
- M00097 Lycopene biosynthesis
- M01039 Spirilloxanthin biosynthesis, bacteria
- M01040 Lutein biosynthesis, plants
- M01041 Bacterioruberin biosynthesis, archaea
- M01042 Neurosporaxanthin biosynthesis, fungi
- M01043 Okenone biosynthesis, bacteria
- M01045 Zeaxanthin biosynthesis
- M01046 Xanthophyll cycle
- M00372 Abscisic acid biosynthesis, plants
- M01044 Astaxanthin biosynthesis
- M00371 Castasterone biosynthesis, plants
- M00927 Gibberellin A12 biosynthesis, plants
- M00928 Gibberellin A4/A1 biosynthesis, plants
- M00929 Gibberellin A1 biosynthesis
Macrolide biosynthesis
- M00773 Tylosin biosynthesis
- M00934 Mycinamicin biosynthesis
- M00774 Erythromycin biosynthesis
- M00775 Oleandomycin biosynthesis
- M00776 Pikromycin/methymycin biosynthesis
- M00777 Avermectin biosynthesis
Enediyne biosynthesis
- M00824 9-membered enediyne core biosynthesis
- M00825 10-membered enediyne core biosynthesis
- M00826 C-1027 benzoxazolinate moiety biosynthesis
- M00827 C-1027 beta-amino acid moiety biosynthesis
- M00828 Maduropeptin beta-hydroxy acid moiety biosynthesis
- M00829 3,6-Dimethylsalicylyl-CoA biosynthesis
- M00830 Neocarzinostatin naphthoate moiety biosynthesis
- M00831 Kedarcidin 2-hydroxynaphthoate moiety biosynthesis
- M00832 Kedarcidin 2-aza-3-chloro-beta-tyrosine moiety biosynthesis
- M00834 Calicheamicin orsellinate moiety biosynthesis
- M00833 Calicheamicin biosynthesis
Type II polyketide biosynthesis
- M00778 Type II polyketide backbone biosynthesis
- M00779 Dihydrokalafungin biosynthesis
- M00780 Tetracycline/oxytetracycline biosynthesis
- M00823 Chlortetracycline biosynthesis
- M00781 Nogalavinone/aklavinone biosynthesis
- M00782 Mithramycin biosynthesis
- M00783 Tetracenomycin C/8-demethyltetracenomycin C biosynthesis
- M00784 Elloramycin biosynthesis
Polyketide sugar unit biosynthesis
- M00794 dTDP-6-deoxy-D-allose biosynthesis
- M00795 dTDP-beta-L-noviose biosynthesis
- M00796 dTDP-D-mycaminose biosynthesis
- M00797 dTDP-D-desosamine biosynthesis
- M00798 dTDP-L-mycarose biosynthesis
- M00799 dTDP-L-oleandrose biosynthesis
- M00800 dTDP-L-megosamine biosynthesis
- M00801 dTDP-L-olivose biosynthesis
- M00802 dTDP-D-forosamine biosynthesis
- M00803 dTDP-D-angolosamine biosynthesis

Biosynthesis of other secondary metabolites

Biosynthesis of phytochemical compounds
- M00039 Monolignol biosynthesis
- M00137 Flavanone biosynthesis
- M00940 Flavanone biosynthesis
- M00138 Flavonoid biosynthesis
- M00941 Isoflavone biosynthesis
- M00942 Pterocarpan biosynthesis
- M00962 Psilocybin biosynthesis
- M00963 Chanoclavine aldehyde biosynthesis
- M00964 Fumigaclavine biosynthesis
- M00981 Geissoschizine biosynthesis
- M00979 Ajmaline biosynthesis
- M00980 Strychnine biosynthesis
- M00965 Vinblastine biosynthesis
- M00943 Reticuline biosynthesis
- M00944 Morphine biosynthesis
- M00945 Sanguinarine biosynthesis
- M00946 Noscapine biosynthesis
- M00961 Betacyanin biosynthesis
- M00370 Glucosinolate biosynthesis
- M00900 Crocin biosynthesis
- M00971 QS-7 biosynthesis
- M00894 Cannabidiol biosynthesis
- M00953 Mugineic acid biosynthesis
- M00952 Benzoxazinoid biosynthesis
- M00902 Podophyllotoxin biosynthesis
Biosynthesis of beta-lactams
- M00672 Penicillin biosynthesis
- M00673 Cephamycin C biosynthesis
- M00675 Carbapenem-3-carboxylate biosynthesis
- M00736 Nocardicin A biosynthesis
- M00674 Clavaminate biosynthesis
Biosynthesis of other antibiotics
- M00877 Kanosamine biosynthesis
- M00889 Puromycin biosynthesis
- M00815 Validamycin A biosynthesis
- M00904 Dapdiamides biosynthesis
- M00787 Bacilysin biosynthesis
- M00785 Cycloserine biosynthesis
- M00848 Aurachin biosynthesis
- M00788 Terpentecin biosynthesis
- M00819 Pentalenolactone biosynthesis
- M00903 Fosfomycin biosynthesis
- M00890 Roseoflavin biosynthesis
- M00951 Cremeomycin biosynthesis
- M00969 Fumagillin biosynthesis
Biosynthesis of other fungal compounds
- M00661 Paspaline biosynthesis
- M00786 Fumitremorgin alkaloid biosynthesis
- M00937 Aflatoxin biosynthesis
- M00893 Lovastatin biosynthesis
- M00891 Ditryptophenaline biosynthesis
- M00901 Fumiquinazoline biosynthesis
Biosynthesis of other bacterial compounds
- M00814 Acarbose biosynthesis
- M00789 Rebeccamycin biosynthesis
- M00790 Pyrrolnitrin biosynthesis
- M00805 Staurosporine biosynthesis
- M00808 Violacein biosynthesis
- M00835 Pyocyanine biosynthesis
- M00837 Prodigiosin biosynthesis
- M00838 Undecylprodigiosin biosynthesis
- M00921 Cyclooctatin biosynthesis
- M00905 Grixazone biosynthesis
- M00876 Staphyloferrin A biosynthesis
- M00875 Staphyloferrin B biosynthesis
- M00918 Aerobactin biosynthesis
- M00906 Ethynylserine biosynthesis

Biosynthesis of secondary metabolites - Reference pathway

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