| Motif id | From | To | Definition | E value | Score |
| pf:DUF4231 | 19 | 104 | Protein of unknown function (DUF4231)
| 0.18 | - |
| pf:ABC_membrane | 54 | 284 | ABC transporter transmembrane region
| 1.3e-18 | - |
| pf:AAA_16 | 345 | 388 | AAA ATPase domain
| 0.01 | - |
| pf:RsgA_GTPase | 346 | 385 | | 0.0035 | - |
| pf:ABC_tran | 351 | 494 | ABC transporter
| 2.1e-32 | - |
| pf:AAA_29 | 351 | 378 | P-loop containing region of AAA domain
| 0.00016 | - |
| pf:AAA_25 | 354 | 397 | AAA domain
| 0.00083 | - |
| pf:AAA_15 | 357 | 388 | AAA ATPase domain
| 0.063 | - |
| pf:nSTAND1 | 358 | 379 | | 0.16 | - |
| pf:AAA_23 | 363 | 381 | AAA domain
| 0.24 | - |
| pf:AAA_21 | 364 | 383 | AAA domain, putative AbiEii toxin, Type IV TA system
| 0.001 | - |
| pf:AAA_22 | 364 | 403 | AAA domain
| 0.014 | - |
| pf:cobW | 364 | 411 | CobW/HypB/UreG, nucleotide-binding domain
| 0.037 | - |
| pf:AAA_30 | 364 | 390 | AAA domain
| 0.57 | - |
| pf:AAA_33 | 365 | 384 | AAA domain
| 0.12 | - |
| pf:T2SSE | 365 | 403 | Type II/IV secretion system protein
| 0.11 | - |
| pf:AAA_18 | 366 | 418 | AAA domain
| 0.019 | - |
| pf:Rad17 | 366 | 397 | Rad17 cell cycle checkpoint protein
| 0.068 | - |
| pf:SMC_N | 439 | 536 | RecF/RecN/SMC N terminal domain
| 0.00092 | - |
| pf:AAA_21 | 471 | 522 | AAA domain, putative AbiEii toxin, Type IV TA system
| 0.75 | - |