Azospirillum humicireducens: A6A40_01595
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Entry
A6A40_01595 CDS
T04409
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ahu
Azospirillum humicireducens
Pathway
ahu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6A40_01595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahu03019
]
A6A40_01595
03009 Ribosome biogenesis [BR:
ahu03009
]
A6A40_01595
Enzymes [BR:
ahu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A6A40_01595
Messenger RNA biogenesis [BR:
ahu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6A40_01595
Ribosome biogenesis [BR:
ahu03009
]
Prokaryotic type
rRNA processing factors
A6A40_01595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ANC90701
UniProt:
A0A161JB34
LinkDB
All DBs
Position
complement(355821..358871)
Genome browser
AA seq
1016 aa
AA seq
DB search
MAKRMLVDATHPEETRVAVVNGNRLEELDFEIASRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLAEERRLEEQAEARAEAAADGAVMGEPIRPE
QVVEEWSPMPSPITPEASDEDAGDEEGENETGSEGQAAPSETATQDTAQAADAPDMVGGD
EDEEVETQRRRSRPLRSYKIQEVVKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVLM
PNTGRGGGISRKITNPADRKRLKEILSDLDIPDGMAVILRTAGLERSKPEIKRDLEYLLR
LWDDIREQTLKSSAPCLIYEEANLIKRSIRDLYANDIDEIWVEGEAGFRTAREFMDMLMP
GHSQRVQLYRDSQIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGKS
TRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRMKEAMKN
DRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVVRSVESASLHVLRAIEE
EGIRKRSAEITIYVPTSIALYILNQKRGELAKIEERHSFHVMVQADDSLIAPDHRLERNK
ARLPDEDGPLVSADRVMAETDRALAAEPVAEPVEEEADVEAAQAEDVGERGETNGANGDG
NGEDRRRRRRRRRGRGRDREEGRIEGDAGAGEDAEESDETGDEETGLPAAAETIPGAAVS
EPAEDDDSEEDEEEGEGDEETGADAGDRNGEGRKKRRRGKRGGRRRSRREGAEGLEGGEE
TAADQSSAAPAETAPVQAPAEASDLDWILAGESAPAPVPEEAPVPVPAAEPPVTAPAPAE
AVAEKAPAKKASRKRKAAAEAPVEAAPAAAPAVDQAPARGRKRKAAAPVEAPVEAAPEPV
TEQAPAKKASRKRKAAAEAPVEAAPAAAPVVAEAPAKGRKRKAAAAEAPAAVATDAAPAK
KASRKRKAAAEAPAEAAPAVVAATAPATAPEPAAVPAAADDTGEAAAKPRRGWWKR
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcatgctggtggacgccacgcacccggaagaaacccgggtcgccgtggtc
aatgggaaccggctggaagaactcgacttcgagatcgccagccgcaagcagctgaagggc
aacatctacctcgcgaaagtgacgcgggtcgaaccttcgctccaggcggccttcgtggag
tatggcggcaaccgccacggcttcctcgccttctccgaaatccatcccgactattaccgc
atccccgtcgccgaccgcgaggccctgctggccgaggagcgccggctggaagagcaggcc
gaagcccgcgccgaggccgccgccgacggcgccgtgatgggcgagccgatccgccccgag
caggtggtcgaggaatggtcgccgatgccctcccccatcacgccggaggcgtccgacgag
gatgccggcgacgaggagggtgagaacgagaccggttccgaggggcaggccgctccgtcc
gaaaccgccacccaggacacggcacaggcggccgacgcccccgatatggtcggcggcgac
gaggatgaagaggtcgagacccagcgccgccgctcgcgcccgctgcgctcctacaagatc
caggaagtggtgaagcgccggcaggtcatgctggtgcaggtgacgaaggaggagcgcggc
aacaagggcgccgctctgaccacctacctgtcgcttcccggccgctactgcgtcctgatg
cccaacaccggccgtggcggcgggatttcccgcaagatcaccaacccggccgaccgcaag
cgcctgaaggaaatcctgtcggatctcgacattccggacggcatggcggtcatcctgcgc
accgccgggctggagcgctccaagcccgagatcaagcgcgacctggaatatctgctgcgc
ctgtgggacgacatccgcgaacagacgctgaagtcgtcggcgccctgcctgatctatgaa
gaagcgaacctgatcaagcggtcgatccgcgatctctacgccaacgacatcgacgagatc
tgggtcgagggcgaggccggcttccgcacggcgcgcgagttcatggacatgctgatgccg
ggtcattcccagcgcgtccagctgtaccgcgacagccagatcccgctgttccaccgctat
caggtggaaacccagatcgacgccatccacagcccggtggtgcaactgcgctccggcggc
tacatcgtcatcaacccgaccgaggcgctggtctccatcgacgtcaactccggcaaatcg
acccgcgagcgcaacatcgaggaaaccgcctacaagaccaacctggaggccgccgacgag
gtggcgcgccagctgcgtctgcgcgatctggccggcctgatcgtcatcgacttcatcgac
atggaggagccgcggaacaacgccgccgtcgagcgccgcatgaaggaggcgatgaagaac
gaccgggcgcgcatccagctcggccgcatctccgccttcggcctgctggagctgtcgcgt
cagcgtctgcgcccctcgctgctggagaccaacttcgaacgctgcccgcactgctcgggc
accggcgtcgtccgttcggtcgagtccgcctcgctgcatgtcctgcgcgccatcgaggag
gagggcatccgcaagcggtcggccgagatcaccatctacgtcccaacctcgatcgcgctc
tacatcctcaaccagaagcgcggtgagctggccaagatcgaggagcgtcacagcttccac
gtcatggtccaggccgacgacagcctgatcgccccggaccatcgtctggagcgcaacaag
gcgcgcctgccggacgaggacggtccgctggtcagcgccgaccgcgtcatggctgagacc
gatcgtgccctggcggcggagccggtcgccgagccggtcgaggaggaggccgacgtcgaa
gccgcccaggccgaggatgtcggcgagcgcggcgagaccaacggcgccaatggcgatggc
aatggcgaggaccgccgccgccgccgccgccgccgccgtgggcgtggccgtgaccgtgag
gaaggccgcatcgaaggcgacgcgggtgcgggcgaggacgccgaggagtccgacgagacg
ggcgacgaggagaccggcctgccggctgccgccgagacgattcccggcgctgccgtctcc
gagccggccgaagacgacgactcggaagaggatgaggaagagggcgagggcgacgaggag
accggcgcagacgccggcgatcgcaacggcgagggccgcaagaagcgccgccgcggcaag
cgcggcggtcgccgcaggtcccgccgcgagggtgcggaagggttggaaggaggcgaggag
actgcggccgatcagtcgtctgccgctccggccgaaaccgctcccgtacaggctccggcc
gaggcatccgacctcgactggatcctggccggtgaaagcgctccggcacccgtcccggaa
gaggctccggttccggtgcccgcggccgagccgccggtaaccgctccggccccggctgaa
gccgttgccgaaaaggcgccggccaagaaggcctcgcgcaagcgcaaggccgctgccgag
gccccggtggaagccgcgcccgccgccgcgcctgccgtcgaccaggccccggccaggggc
cgcaagcgcaaggctgccgctccggtggaagcaccggtggaagcggcacccgagccggtg
acggagcaggctccggccaagaaggcctcgcgcaagcgcaaggccgctgccgaagccccg
gtcgaggccgcgcccgctgccgcgcctgtcgtcgccgaagcgccggccaagggccggaag
cgcaaggcagccgcagccgaagccccggcggcagtcgcgaccgacgcggctccggccaag
aaggcctcgcgcaagcgcaaggccgctgccgaggctccggccgaagccgcgcccgccgtc
gtcgctgcgacggcgcctgccaccgctccggaacccgctgcggttccggcggcggccgac
gacaccggcgaagctgccgccaagccgcgccgcggctggtggaagcggtaa
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