Alteromonas mediterranea 615: I633_08935
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Entry
I633_08935 CDS
T02719
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amh
Alteromonas mediterranea 615
Pathway
amh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I633_08935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amh03019
]
I633_08935
03009 Ribosome biogenesis [BR:
amh03009
]
I633_08935
Enzymes [BR:
amh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I633_08935
Messenger RNA biogenesis [BR:
amh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I633_08935
Ribosome biogenesis [BR:
amh03009
]
Prokaryotic type
rRNA processing factors
I633_08935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGP77812
UniProt:
S5AC74
LinkDB
All DBs
Position
complement(1800333..1803737)
Genome browser
AA seq
1134 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPDGMGLIVRTAGVGKSYEEL
EWDLKVLLKHWEAISEVAEGREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVLRRRPDDVVSEASYDVELMPAVEAETETTTTTPVKREEPALKGLVAPTAAPVVAPK
EEPAKKAEDVPSLFARIGKWISDLFGSEGEEESNKDKKQQSTDTNKNRNNRSRNNDDRRR
KPRNKNQRRNSSSQNRDQNKDQGRDEQQDNRKARGDQRQDQRQDQDDKRNNKGRKPRKAQ
QPRDEQQKPKHEKQEGEQQENQAQKKREVAERRKRRDKRRSVRVKKDDNTPSTVEQTEAQ
AVPAQNGNEAVKASQQDAKAQSKPKADAKPQKAVKADEVEAQSGNTAAQKQETKKPAKKP
VDKASEEKSAPEADKVEGSQTDSADTTEANSEENGQKREGRGRSRRSPRHVRAAGQRRKK
ESQQVDEAETQAKQPGELEPQEPETSTVATQTEAPAVEETQAQEPGKLAPSEEQPASNQE
KQDTANLDVEAVQDELQFDVEPSAGKKPLAKEQPSAEEQASAEETPVGGNTTSADENSVA
KAAPLSQEEAVAKAQASTDSSTSSDEVASEEAAPSEVKATSDNASEQAAEESASASPEQV
EINLAETTEAAVETKANAPVAKAPAKQQVSETSSLAASGKGKRGASHPMALPAEVNDAFV
DVALTAKADSERPALAVSGKTAAMAQAGSRASAPTTLPKSVDANAEPNADAVAQ
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaacaagaagagttgcgcgttgccctagtcgat
gggcaacggttgtacgatttagatatagagagtccaggacacgaacaaaagaaagcaaat
atctacaagggtaaaattacccgtgttgaacccagcttagaagcagcgtttgttgactac
ggcgcagagcgtcatggattcctaccccttaaagaaatagcccgcacttacttccctaaa
ggttacaaattcgaaggccgccctaacatcaaagatgtgattaaagaaggccaagaagtt
atcatccaaattgataaagaagagcgcggccaaaaaggcgcggcactaaccacattttta
tcgcttgcgggaagttacttagtgcttatgccaaacaaccctcgtgctggcggtatttct
cgccgaattgagggtgatgagcgcactgagcttaaagagtcactaagcaaacttgacctt
ccagatggcatgggccttattgttcgtaccgctggtgtaggtaaatcttacgaagaatta
gagtgggatttaaaagttcttcttaagcactgggaagcaatttcagaggttgctgaaggt
cgtgaagcaccgtttttaattcaccaagaaagcaacgttattgttcgcgctatccgcgac
tatctacgtcgtgatattggcgagattcttatcgacaagaccagcatctacgagcaggca
ctacagcatattcagctagtccgtcctgatttcgcaagccgtgtaaagctttatcgcggt
gaagttccattatttagtcactatcaaattgaaagccaaatcgagtcagccttccaacgt
gaagttcgcctgccgtctggtggttcaattgttattgacccaacggaagcgttgacttcc
attgatatcaactctgcccgtgctactaagggtggcgatatcgaagaaacagcccttaac
actaacctagaagcggctgatgaaattgcccgtcaattacgccttcgcgatctaggtggt
cttgttgttatcgacttcattgacatgacccccgttcgtcatcagcgtgaagttgaaaac
cgcatgaaagatgcggtaagaagcgacagagcgcgtgtacagttagggcgtatttcacgc
tttggtctattagaaatgtcacgccagcgcctgcgcccttctctcggtgagtctgcgcat
cacgtgtgccctcgctgttcaggccacggtaccattcgcgggactgagtctttggcgctg
tctattcttcgcatactagaagaagaaagtattaaagaaaatacagggcaaattgaagcg
caattgcctgtacccgtagcaacctacttactgaacgaaaaacgtaagtctattcagcta
ctagaaaaacgtcacggtgtagatttgctgctcattccaaacgcgaacctagacacaccg
cactaccaagtattgcgtcgtcgccctgacgatgtggtatctgaagccagctacgacgtt
gagttaatgcctgcggtagaagcagaaactgaaacgacgactacgacgccagttaaacgc
gaagaacctgcccttaagggcctagttgcaccaacggctgcaccggttgttgctcctaaa
gaagagccagcgaagaaagctgaagacgtgccttcattatttgcgcgtattggaaagtgg
atcagcgacttgtttggctctgaaggtgaagaagagagcaacaaagacaagaaacagcaa
tctactgatacaaataagaatagaaacaatcgcagccgcaataacgacgaccgtcgtcgt
aagccgcgcaataaaaaccagcgtcgtaatagctcgtctcaaaacagagaccagaataaa
gaccaaggtcgtgacgagcagcaggataatcgcaaagcacgcggtgatcagcgccaagac
cagcgtcaagatcaagacgacaagcgcaacaacaaaggtcgcaagccgcgtaaggcgcag
cagcctcgcgacgagcagcaaaagcctaaacacgagaagcaagaaggcgaacagcaagaa
aaccaagcacagaagaagcgtgaagttgctgaacgcagaaagcgccgtgacaagcgtcgt
agcgttcgtgtaaagaaagatgacaatacgccaagcactgtagagcaaacagaagcgcaa
gcggtacctgcccagaacggcaacgaggctgtaaaagcgtctcaacaggatgcaaaagcg
caaagtaagccgaaagctgacgcaaagcctcaaaaggcggtgaaagccgatgaggtagaa
gcacagtcaggcaatacggctgctcagaaacaagaaacgaaaaaaccagctaaaaagcct
gtagacaaagcgtctgaagaaaaatctgcaccagaagccgacaaggttgaaggtagccaa
acagatagcgcagacactacagaggcgaacagcgaagaaaacgggcaaaaacgcgaagga
cgtggtcgttcgcgccgttctcctcgtcacgtacgtgcagctggtcagcgtcgtaagaaa
gagtctcagcaagttgatgaagctgaaacacaagcgaagcaaccaggcgaacttgagcct
caagagccagagacaagcacagtagctacgcaaacagaagcgccggctgttgaagaaact
caagcacaggagcccggaaagctagcgccatctgaagagcaaccagcatctaatcaagaa
aagcaagacaccgcgaaccttgacgttgaagcggttcaagacgaacttcagtttgatgta
gagccttcagcgggtaagaagcctttagcgaaagaacagccttcagcggaagaacaagct
tcagcagaagagactcctgtaggaggcaatacaacttcagctgatgagaactctgtcgct
aaagcagcccctctttcacaagaagaggcggttgcaaaagcgcaggcttctaccgatagc
agcacctcatctgatgaagtagcgtctgaagaggctgccccttctgaagtgaaagcgacg
tctgacaacgcgtcagaacaagccgcagaggaaagcgcttcagcatcgccagagcaggtt
gaaatcaaccttgcagaaacaaccgaagcagcagtagaaactaaagcgaacgcaccggta
gcgaaagcgcctgctaagcaacaggtttcagaaacgtcaagcttagctgcaagcggtaag
ggtaaacgcggcgcatctcatccgatggcgctacctgctgaagttaacgacgcctttgta
gatgttgcgttaacggctaaagccgatagcgagcgtccagcgctggccgtttcgggtaaa
acagccgcaatggctcaggcaggctctcgagcatcagcgccaacaacactacctaagtcg
gttgacgctaacgcagaaccaaacgccgacgcagtagcgcaatag
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