Allorhizobium ampelinum: Avi_1794
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Entry
Avi_1794 CDS
T00851
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Avi_1794 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avi03019
]
Avi_1794 (rne)
03009 Ribosome biogenesis [BR:
avi03009
]
Avi_1794 (rne)
Enzymes [BR:
avi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Avi_1794 (rne)
Messenger RNA biogenesis [BR:
avi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Avi_1794 (rne)
Ribosome biogenesis [BR:
avi03009
]
Prokaryotic type
rRNA processing factors
Avi_1794 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACM36289
UniProt:
B9JVK9
LinkDB
All DBs
Position
1:complement(1495734..1498841)
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AA seq
1035 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEHGRHDDGDFEPVRSRDPGERDQPV
IADPAEFANEAEEVAGLAVNQADDDHAQTTAEQPADAPQAEASQTDAVQADAVPAEPQAD
EAAPEAAAKPKARRPRKPRKKAGEVEASADEAVAEPVAVESDETPDDGSSNGSMAAMVDT
DSISEETDSRHRHDDDDDDDDDDGEKEEIESVGAEDAMEEVPDRVRRTPRKQYRIQEVIK
RRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPADRKRLKEV
ARDLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLI
KRSIRDLYNKDISEIVVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQL
DRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREYSIEDTALQTNLEAAEEVARQLR
LRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRAS
VLESTTQVCQHCSGTGLIRSQSSVALHVLRGVEEYLLKSTTHDITVRTLPETALYLLNHK
RGSIVDYENRFGVSIIIDSDASVGHQHFAIDKGEPVANPVRIETLLPLISEPEEDDPIIE
IEEEDDEDVVEAPVQAQPASSGNAAANAAEDGNRKRKRRRRRRGKNGNGHADGQQNAAGG
DEGDDDSEGEDDAEDTAEDRDDSVEASDASEDGNSESQRRNKRRRRGKRGGRRGRDENGV
SADAEGNDTAEDDDSAEESVQADADQAVAVAEVPSDAVADSVVVAAEVSVPATEAVKADE
PVAAKPRRARKPKASAKTEAADSVETVTEPAAVPEAVVVEAPAAAEPVAASPVSEETSVP
APAQDVSAPEPAVEAPAPEVASEPEAVSDASAEKPVRANRSSNVSTSEPVVTSVTNGEEA
PKPKKGGWWQKRGFL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgctaatcgatgcgtctcacgaagaagagacgcgcgtcgttgtcgtt
cgcggtaacaggatcgaagaattcgattttgaatcccagcataagaaacagatccgcggc
aacatctatctggccaaagtcacacgggtcgagccttccttgcaggccgccttcgtcgat
tacggcggcaatcgtcacggcttcctggcttttgcagaaatccatcccgattattatcag
atcccgcttgccgaccgtcaggccttgctgaaggctgaagccgaagagcatggccgtcac
gacgacggcgatttcgagccggtgcgcagcagagatcccggcgaacgcgaccagccggtg
attgccgatccggccgaattcgccaatgaagccgaagaagtcgctggtctcgccgtcaat
caggcggatgacgatcacgcgcaaaccacagccgagcagcccgcagatgcgccgcaagcc
gaggcgtcacagactgacgcagtgcaggccgacgcagtaccggctgagccgcaagcagac
gaggcagcccccgaggctgcagcaaagcccaaggcacgccgtccgcgcaagccccgcaag
aaggcaggcgaggttgaagccagcgccgatgaagccgtcgcagaacctgtggccgtcgaa
agtgacgagacaccagatgacggatcgagcaatggcagcatggccgccatggtcgacacg
gactcgatctccgaagaaaccgatagccgccatcgtcatgacgatgatgacgacgacgat
gatgatgacggcgagaaggaagaaatcgaatctgttggcgccgaagacgccatggaagag
gttcccgaccgggtgcgccgcacgccgcgcaagcaatatcgcatccaggaagttatcaag
cgccgccagattcttctggtgcaggtcgccaaggaagaacgtggcaacaagggtgctgcg
ctgaccacctacctgtctctggcaggccgctattctgttctgatgccgaatacggcacgc
ggcggcggcatttcgcgcaaaatcaccaaccccgccgaccgcaagcggttgaaggaagtg
gcccgcgatctggaagtgccgctgggcatgggcgttatcttgcgcaccgcaggtgccaat
cgcaccaaggtcgaggtcaagcgcgatttcgaatatctgatgcgtctctgggaaaacgtt
cgcaccctgacgctgaattccaccgcaccttgcctcgtctacgaggaaggctcactgatc
aagcgctcgatccgcgacctgtataacaaggatatcagcgagatcgtggtgtcaggcgaa
gaaggctatcgtgaagcgaaagacttcatgaaaatgctgatgccgagccacgccaaggtg
gttcagccctaccgcgacattcacccgatcttctcgcgctccggcattgaggcccagctg
gaccggatgttgcagccgcaggtgacgctgaagtctggtggttatatcatcatcaaccag
accgaagcgctggtgtccatcgacgtgaactcgggtcgttcgacccgcgaatattccatc
gaagacaccgccctgcaaaccaatctggaagccgcggaagaagtggcccgccagttgcgc
ctgcgcgaccttgcaggtctgatcgtcatcgacttcatcgacatggaagagaagcgcaac
aaccgctccgtcgagaagaagctgaaggattgcctgaaaaacgatcgcgcccgtattcag
gtcggacgtatttcgcatttcggtctgctggaaatgtcgcgtcagcgcattcgcgccagc
gtgttggaatcgaccacccaggtctgccagcattgctccggcacaggcctgatccgttcg
cagtcctccgttgccctgcatgtactgcgcggcgtcgaagaatatctgctgaaaagcacc
acgcacgatattaccgtgcgtaccctgccggaaacggcgctttacctgctcaaccacaag
cgcggctcgattgtcgattatgaaaaccgcttcggcgtgtcgatcatcatcgactcggat
gccagcgtcggtcaccagcatttcgccatcgacaagggcgagccggttgccaatccggtc
cgcatcgaaaccttgctgccgctgatcagtgagccggaagaggacgacccgatcattgag
atcgaggaagaggatgacgaggacgtcgttgaggctcctgttcaggcacagcccgcatca
agtggcaatgctgcagcaaacgccgccgaagacggcaaccgcaagcgcaagcgccgccgc
cgccgccgtggcaagaatggcaatggccatgccgatggacagcagaacgctgccggcggt
gacgaaggcgacgatgacagcgaaggcgaagacgacgccgaagatacggcagaagatcgc
gatgatagcgtcgaggcctctgacgcgtctgaagacggcaacagcgaaagccagcgccgc
aacaagcgccgccgtcgtggcaagcgtggtgggcgtcgcggtcgcgatgaaaatggtgtg
agcgccgatgccgaaggtaatgacactgctgaagatgacgattctgctgaagagtcagtg
caagccgatgccgatcaggctgtcgccgtcgctgaggttccgtccgatgccgtcgccgac
agtgttgtggtggctgccgaggtcagtgtcccagcaacagaggccgtgaaagccgatgag
ccagtggctgccaagccacgccgggctcgcaagccgaaagcgtcagccaaaaccgaagcc
gccgacagcgtcgaaacggtaacggaacctgctgctgtgcctgaggctgtggttgtcgaa
gcaccggctgctgccgagcctgtcgccgcctcccccgtctcggaagagacgtcagtaccg
gcacctgctcaggacgtctctgcaccagagcctgcggtcgaagcgcctgctcctgaagtt
gcgagcgagccagaggccgtaagtgatgccagtgccgaaaagccggtgcgcgccaatcgg
tcgtccaatgtcagcacatccgaaccggtcgttacctcggtgaccaacggcgaggaagct
ccgaagcccaagaagggcggatggtggcagaagcgcggtttcctctag
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