Bifidobacterium bifidum BGN4: BBB_0233
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Entry
BBB_0233 CDS
T02135
Symbol
rng
Name
(GenBank) ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbf
Bifidobacterium bifidum BGN4
Pathway
bbf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBB_0233 (rng)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbf03019
]
BBB_0233 (rng)
03009 Ribosome biogenesis [BR:
bbf03009
]
BBB_0233 (rng)
Enzymes [BR:
bbf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBB_0233 (rng)
Messenger RNA biogenesis [BR:
bbf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBB_0233 (rng)
Ribosome biogenesis [BR:
bbf03009
]
Prokaryotic type
rRNA processing factors
BBB_0233 (rng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AFL03829
UniProt:
I3WG16
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All DBs
Position
282939..285821
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AA seq
960 aa
AA seq
DB search
MPSVNDNGFSRDETEEQQPTHADAAQSPDSADKTPAAPRRRRGGRRVVRGAGAAGAAVAL
KVEDHSAPLFAEPVVEQPLTRRRRSKAADESPETNEPETAASADSEKKDDARHAKADGKP
RSASRSSKATKRHDDDADQAEPRRTRVRRRTAMFSSREDASPAIPGEPSDDDLGVDTGTD
IIVRDDSADLSRALDVVSTLPQPAPRAHAMTSVLFQEPVLPVPGIVRDARDDDREDDDRD
SRGGGKSRRSRNGRVSRDGAQGDKDKSASSRRDIDGLSHIERVDSFDTDDSRSRDESGEA
DEPVRSSRRNRRLNAQERRAAAEVEQIEEDLELDGISYTPVDDEEPSEDSGTRSRRRRRS
RQNRADDSRGNGESDSSQSAAQQDEPAKPSSRRTRDEEEDDDSNVTRRRRRRRSRASDEQ
GDDEMTVRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLVEQDFLARREHV
NRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIG
QSRNGVLYAGEVNWDATRLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAG
RFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLES
LVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEY
LDTMAPDLKEKLSKWDPSEHQGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMT
TIDVNTGRFIGRGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLV
LRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCHGRGFILHDEPT
VSADYDDPYALKGGDPFIKTNKHGRGTDVQVPQGSSPDIKAKLAQIAAAAVAANGTDEDE
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
gtgcctagtgtgaacgataacggtttcagtcgtgacgaaaccgaagaacagcagcctacc
cacgccgatgcggcccagtcgcctgattcggccgataaaacgcctgcagcgccgcgtcgt
cgtcgcggtggccgccgcgtggttcgtggcgccggtgccgccggtgccgcggtcgcgctg
aaggtcgaggaccattccgctccgctgttcgcggaacccgtggtggagcagccccttacc
cgtcgtcgccgctcgaaggcggccgacgaatcgccggagaccaacgagccggagaccgcc
gcatcggccgattccgaaaagaaggatgatgcgcggcacgccaaggccgacggcaagcct
cggtccgcgtcgcgctcctcgaaagcgacgaagcgccatgacgatgacgccgatcaggcc
gaaccccggcgcacccgcgtgcgtcgtcgcaccgccatgttctcctcgcgcgaggacgct
tcgccggccattccgggcgagccgtcggatgacgacctcggcgtcgataccggcaccgat
atcatcgtccgcgatgattccgccgatctgtcccgcgccctggatgtcgttagcacgctg
ccgcaacctgcgccgcgcgctcacgcgatgacgtccgtgctgttccaggagccggtgctg
cccgtgccgggaatcgtgcgcgacgcgcgcgatgacgaccgcgaggatgacgaccgcgac
agccgcggtggtggcaagtcccgtcgctcgcgcaatggtcgtgtgtcacgtgacggtgcg
cagggggacaaggacaagagcgcttcctcccgtcgcgatatcgacggtctgagccacatc
gagcgcgtcgacagcttcgataccgacgacagccgcagccgtgacgaatccggcgaggcc
gacgagccggtgcgttcgtcgcgccgcaaccgtcgcctgaacgcgcaggagcgccgtgcg
gccgccgaagtggagcagatcgaggaggacctggagctcgacggcatctcctatacgccg
gtcgacgacgaggagccctccgaggattcgggcacgagatcccgtcgccgtcgccgctcc
cgtcagaaccgtgccgacgacagccgcggcaacggcgagtcggacagcagccagtccgcg
gcgcagcaggacgagccggccaagccgtcgtcccgccgcacacgcgacgaggaagaagac
gatgactccaacgtcacccgtcgccgtcgccgtcgccgctcccgcgcgtccgacgagcag
ggtgacgatgagatgaccgtgcgccgctcgcgcaagcagcagtacatcgacgagatcacc
gacgtcgagggctccacccgactggaggcgaagaagcagcgccgccgcgacaaccgccgc
gagcgcagccgccagagccagctggtcgagcaggacttcctcgcgcgccgcgagcacgtg
aaccgtctcatggtggtgcgcgaacgcggccatcacacgcagatctccgtcatcgaggac
aacgtgctcgtcgagcattacgtctccgacatccaggaggtcgccacggtcggcaacatc
tacctcggccgcgtgcagaacgtgctgccgagcatggaggcggcgttcgtcgacatcggc
cagtcccgcaacggcgtgctgtatgccggtgaggtgaactgggacgcgacccgcctcgaa
gggcagccgcgccgcatcgagctggcgttcaaatctggcgacccggtgctcgtgcaggtc
accaaggatccgatcggccacaagggcgctcgcctgacttcgcaggtcacgctcgccggg
cgttttctggtgctcgtgccgtccggcggcatgaccggcgtgagccgcaagctgagcgag
cgcgagcgttcgcgcctcaagggcattgtctcgaagatcgcgccgaaggacatgggcgtg
attatccgcaccgcggccgaaggtgccaaggaggaggcgatcgtcaaggatctggagagc
ctggtccgccagtgggagcgcatcaacgccaagcgcgaggagttctggcacggcaagcgg
ccgaagctgctgcagggcgagccggacgtcgcgatccgcgtggtgcgcgacatcttcaac
gacaatttcggcgagctaatcgtcgagggcgacaaggtgtacgagcgcatcgaggaatac
ctcgacacgatggcgcccgatctcaaggagaagttgtccaagtgggatccgtccgagcat
cagggcaaggacgtgttcgacaagtggcagatcgacgcgcagctcaggaagggcatggag
cgtcaggtgtacctgccttccggtgggtcgatcgtcattgaccgcaccgaggccatgacc
acgatcgacgtgaacaccggccggttcatcggccgtggcaagagccttgaggagacggtg
acgcgatgcaacctggaggcggccgaggagatcgcgcgccagctgcgtctgcgcgatatc
ggcggcatggtcatgatcgatttcgtcgacatggtgatgcccgccaaccgcgatctggtg
ctgcggcgtctggtcgaatgcctggcgcgtgaccgcaccaagcatcaggtggcggaggtc
acgtcgctgggtctggtgcagatgacgcgcaagcgcatcggccagggcctggtcgaagcg
ttctccgaggagtgcccgacctgccatggccgcgggttcatcctgcatgacgagccgacc
gtcagcgcggattacgacgatccgtatgcgctcaagggcggcgatccgttcatcaagacc
aacaagcacggccgcggtacggatgtgcaggtgccgcagggctcctcgccggatatcaag
gccaagctcgcgcagatcgccgccgcggcggtcgccgcgaacggcaccgacgaggatgag
tga
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