Catenulispora acidiphila: Caci_7273
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Entry
Caci_7273 CDS
T00967
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cai
Catenulispora acidiphila
Pathway
cai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Caci_7273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cai03019
]
Caci_7273
03009 Ribosome biogenesis [BR:
cai03009
]
Caci_7273
Enzymes [BR:
cai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Caci_7273
Messenger RNA biogenesis [BR:
cai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Caci_7273
Ribosome biogenesis [BR:
cai03009
]
Prokaryotic type
rRNA processing factors
Caci_7273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ACU76102
UniProt:
C7Q8B4
LinkDB
All DBs
Position
complement(8446272..8450276)
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AA seq
1334 aa
AA seq
DB search
MLDNEPTGVPGEQPDQTSDAQDAATAATNEGGAPQRQRRRAASRPAGPPQPPEAGSEAAA
SGDAAAEPESKPKRARKTAAKKVAAPEPEPETAEPGDSASAAKKTTRARTRKKAAEAEPV
AAGEARDSGSATAQTAPTEQAQPAADTADDAAKGARTRTRRRATSAGTAAEQVTGADSGA
ESAEGAKTADTAAAAAGTGRSETAAAGTGRTGAAKRGTRAAAADRDQASAAAADTASAQV
DTSSDQAETSQSDTSQADTAGASRTRTRRRATSAGTAAQQASAPEAATAPQGTAEQADDQ
SADSGSRPTGLSSPFANPFAAPQLPAKTAKKAAPAQETPTEQPGKPEFKAEPKAQAEAPT
VPVAAAAAASDDDAESGAKSKRTRRRAASAPAGPPRALEEAAEGQQTQQGQDKQGQDKQG
QQDKQGQAQQDKQDKQDKPRQGRQSRQSKQDKAQQSQPAAQDTATAQTAAQDAEQPVDLD
SLSPAERARAIIAARAAAPAAGVPLFQAPDLTTAAAQKAAAKAAKAEASDTEAEAEPEAE
AEEEPAPTRRTRTRNRNRNRSEQAEPATDSAEAEAEDDEEDDDEGTGSSSRRRRRRRRRA
GGESMEPGPDDPPNTVVKVRESRVRSRDRKGGGLADDDVQGVRGSTRLEAKKQRRREGRD
TGRRRAPLITEAEFLARRESVERVMVVRQSGDRTQIGVLEDGVLVEHYVNRAQSASYVGN
VYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEAAGITGQAKRIESVLKSGQAVLTQ
VTKDPIGHKGARLTSQISLPGRYLVYVPEGTMTGISRKLPENERNRLKTILKAVVPEHAG
VIVRTAAEGATEDELRRDVERLSAQWEEIQRKAKTSAGSAPTLLYGEPDLTVRVVRDIFN
EDFSKLVVSGDQAWDTIREYVGGVAPDLAPRLERWTSEQDIFAVHRVDEQLAKALDRKVW
LPSGGSLVIDRTEAMVVIDVNTGKFTGSGGNLEETVTRNNIEAAEEIVRQLRLRDLGGII
VIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGLIQMTRKRVGQGLLEAFSET
CDKCNGRGVLVHMEPVPHGHGHGSEDADRDGRSQQNKGGGKQEESRADGGQGGAEEEHEG
GRGRRKRRKSHGHADRQQHFDPQYDVDGVPEEFQDFADGEQAPAGPVTVTKVARVAADGA
GVADDADTDRDEDEAAELSEHSAVDRVPSHEHVVAPVVTPDDVVAAEEADVTERLAVGDA
QAHTVYVPRTGGAVSASEADKDETEAEVAEPSAVAAMAVAPAPAAEADPDAPKRRGLRVR
RAAKRPAGPPAAHN
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagcccaccggcgtccccggcgaacagccggaccagacgtcagacgcg
caggacgcggccacggccgccaccaacgaaggcggggcgccccagcgccagcgccgccgg
gcggccagccgcccggccggcccgccgcagcccccggaggcggggtccgaggccgcggcc
tccggcgacgccgccgcggagcccgagagcaagcccaagcgggcgcgcaagaccgcggcc
aagaaggtcgccgccccggaacccgagccggagacggccgagcccggggacagcgcatcc
gctgccaagaagacgacgcgtgcccgcacgcgcaagaaggctgccgaggccgagccggtc
gcggccggcgaggcccgggactccggctccgccaccgcgcagaccgccccgaccgagcag
gcgcagcccgccgcggacaccgccgacgacgccgccaagggtgcgcggacgcgtacccgc
cgccgcgccacgtcggccgggaccgccgccgagcaggtgaccggcgccgattcgggtgct
gagagcgctgagggcgccaagaccgccgacaccgctgccgctgctgccgggaccggtcgc
tccgagaccgctgccgccgggaccggtcgtaccggtgccgccaagcgcgggacccgcgcc
gcagccgccgaccgcgaccaggcttccgccgccgctgccgataccgcctcggctcaggtc
gacacctcgtccgaccaggccgagaccagccagtcggacaccagccaggccgacaccgcc
ggcgcgtcccgcacccgcacccgccgccgcgccacctcggccggcaccgcggcccagcag
gcgagcgcccccgaggctgccaccgccccgcagggcaccgccgagcaggccgacgaccag
tccgccgactcgggctcccgcccgaccggtctcagctcgccgttcgcgaacccgttcgcg
gcgccgcagctgcctgcgaagacggccaagaaggccgccccggcgcaggagacacccacc
gagcagcccggcaagccggagttcaaggcggagcccaaggcccaggccgaagccccgacg
gtgcctgttgcagctgctgctgccgcctcggacgacgacgccgagtccggcgccaagtcc
aagcgcacccgccgccgcgccgcctccgctcccgcgggcccgccgcgcgccctggaagag
gccgccgagggccagcagactcagcagggccaggacaagcagggccaggacaagcagggc
cagcaggacaagcagggccaggctcagcaggacaagcaggacaagcaggacaagccccgc
cagggcaggcagtcccgccagagcaagcaggacaaggcccagcagtcccagcccgccgcc
caggacactgcgaccgcccagactgccgcccaggacgccgagcagcccgtcgacctcgac
agcctgtccccggccgagcgggcccgcgccatcatcgccgcgcgcgccgccgcgccggcc
gccggcgtgccgctgttccaggcgcccgacctgaccaccgccgccgcgcagaaggccgcc
gccaaggccgccaaggccgaggcgtcggacaccgaggccgaagccgagcccgaggccgaa
gccgaggaggagccggcgccgacccgccgcacccggacgcgcaaccgcaaccggaaccgc
tctgagcaggccgagccggcgaccgacagcgccgaggccgaagccgaggacgacgaagag
gacgacgacgagggcaccggctcctccagccgccgccgtcgccggcgccgccgccgggcc
ggtggcgagtccatggagcccggtccggacgacccgccgaacaccgtggtcaaggtccgc
gagtcccgcgtgcgcagccgggaccgcaagggcggcggcctggcggacgacgacgtccag
ggcgtgcgcggctcgacccgcctggaggccaagaagcagcgccgccgcgagggccgggac
accggccgccgccgcgcgccgctgatcaccgaggccgagttcctcgcccggcgcgagagc
gtcgagcgggtcatggtcgtgcgccagagcggcgaccggacccagatcggcgtcctggag
gacggcgtgctcgtcgagcactacgtcaaccgcgcgcagtccgcgtcctacgtcggcaac
gtgtacctgggaaaggtccagaacgtgctgccctcgatggaggccgcgttcgtcgacatc
ggcaagggccgcaacgccgtgctgtacgccggcgaggtcaacttcgaagccgccgggatc
accggccaggccaagcgcatcgagagcgtcctgaagagcggccaggcggtcctgacccag
gtcaccaaggacccgatcggccacaagggcgcccggctgaccagccagatctcgctgccc
ggccgctacctggtctacgtgcccgagggcaccatgaccgggatcagccgcaagctgccg
gagaacgagcgcaaccgcctcaagaccatcctgaaggcggtcgtccccgagcacgccggc
gtcatcgtgcgcaccgcggccgagggcgccaccgaggacgagctgcgccgcgacgtggag
cggctgtccgcgcagtgggaggagatccagcgcaaggccaagacctcggccggctcggct
ccgaccctgctgtacggcgagccggacctgaccgtgcgcgtggtgcgcgacatcttcaac
gaggacttcagcaagctggtcgtctccggcgaccaggcctgggacaccatccgcgagtat
gtcgggggcgtcgccccggacctggcgccgcggctggagcgctggacctccgagcaggac
atcttcgccgtgcaccgggtggacgagcagctggccaaggcgctggaccgcaaggtctgg
ctgccctccggcggctcgctggtcatcgaccgcaccgaggcgatggtcgtgatcgacgtc
aacaccggcaagttcaccggctccgggggcaacctggaggagacggtcacccgcaacaac
atcgaggcggccgaggagatcgtccgccagctgcggctgcgcgacctcggcggcatcatc
gtcatcgacttcatcgacatggtcctggagtccaaccgcgacctggtgatgcgccggctg
ctggagtgcctgggccgggaccggaccaagcaccaggtggccgaggtcacctccctcggt
ctgatccagatgacccgcaagcgcgtgggccagggcctgctggaggccttctccgagacc
tgcgacaagtgcaacggccgcggcgtgctggtccacatggagccggtgccgcacggccac
ggccacgggtccgaggacgccgaccgcgacggccgcagccagcagaacaagggcggcggc
aagcaggaggagtcccgcgccgacggcggccagggcggcgcggaggaggagcacgagggc
ggccgcggccggcgcaagcggcgcaagtcgcacggccacgccgaccgccagcagcacttc
gacccgcagtacgacgtggacggcgtgccggaggagttccaggacttcgccgacggcgag
caggcgccggccggcccggtcaccgtgaccaaggtggcccgggtcgccgcggacggcgcc
ggcgtcgcggacgacgccgacaccgaccgcgacgaggacgaggccgccgagctgtccgag
cacagcgccgtggaccgcgtcccgagccacgagcacgtggtggctccggtcgtgaccccg
gacgacgtggtcgccgccgaggaggccgacgtcaccgagcggctggccgtcggcgacgcc
caggcgcacaccgtctacgtcccgcgcaccggcggcgccgtgagcgcctccgaggcggac
aaggacgagaccgaggcggaggtcgccgagccgtccgcggtcgccgcgatggccgtcgcc
ccggcgccggccgccgaagcggaccccgacgcccccaagcgccgtggcctgcgggtgcgc
cgtgcggccaagcgcccggcgggtcctccggcggcccacaactga
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