Cellulosimicrobium sp. TH-20: B8281_10365
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Entry
B8281_10365 CDS
T04804
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cet
Cellulosimicrobium sp. TH-20
Pathway
cet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B8281_10365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cet03019
]
B8281_10365
03009 Ribosome biogenesis [BR:
cet03009
]
B8281_10365
Enzymes [BR:
cet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B8281_10365
Messenger RNA biogenesis [BR:
cet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B8281_10365
Ribosome biogenesis [BR:
cet03009
]
Prokaryotic type
rRNA processing factors
B8281_10365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
ARK05073
UniProt:
A0A1W6DQ65
LinkDB
All DBs
Position
2358579..2362247
Genome browser
AA seq
1222 aa
AA seq
DB search
MTLDSTSDSIPSESTADAAADRAESPTTPARKPARRRATRSAAPPQTPPAVTAASDVAAS
AAAIADATPAPEAPVTAPVAEATTPPARRSRRATRTTPSVAAPAADAAPAASAPADVPAD
ASPAAADAAAEPPAAEPAPRARAPRRAQGGGKKAKAPAGDAPLDVLSEFGLSAPPAAEQA
PAATVAPDADALLGAADAPRRAKRTRATRTTAQAPAVEAAPVAEPDAPAADTAPSGAPTT
AEPVEAPAAKKPARRSRRATSAAAAPAAETAAPTAETAAPAAEVAAPAVADAPSAAEPTP
AEAETPASAEPAKKPARRSRRATSKPAEAAPEATAAADSTAAPEAPAAAASSAPAGGPAS
PAATGAGTSTPRLATTALLFQAPDPAAAPRRPRRAQSPAGPPRHVEPAAPAAATTEPVAT
TEPVATTEPTATPEPTTGTRGRRGRRASGPASRTAEPRTPESQTAEPSTPVEEPAAAELV
LTGEDAAAVEEIEAIESELVAEGVEVPEDAFGPEDFVELDEAEEPDEQPAADDADSDSDA
GPRRRRRRGGRGRRGRPDGGRDQDREQDRDEDEDDATPSAQDDEPADAAAPADAEQTDHE
AGDEQGEDEAGGSRRRRRRRRGSRGEGETTTTRSRPRERSLADEVTALKGSTRLEAKRQR
RREGRDAGRRRQIITEAEFLARRESVERSMVVRERGGRTQIAVLEDGVLVEHYVSQQSQA
SMAGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEVNWDAAGLEGQPRRIEQALKSGD
SVLVQVTKDPIGHKGARLTSQITLAGRYLVFVPGGGMTGISRKLPDTERNRLKKILKEVV
PDGAGVIVRTAAEGASEEELRADVERLRGQWEAIEKKSKSASAPALLQGEPDLAIRVVRD
IFNDDFSSLVVEGDGAWSEISTYVEELAPDLRERVSKWTGTQDVFTVHRVDEQLAKGMDR
KVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIG
GIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAF
SETCEHCHGRGFIVHTDPIEKSGGNRGGHDHGNHGNGNGNAGGNGGGAAADEPAEGGRSR
SRRKRGSGSGASAPKDTGITLPQPAVPVLPEVTSEARAAVKATLATIAAAAAHAHEHDGA
EAPADGSAPTAGDDSGSEPTES
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
gtgacgctcgacagcacctccgacagcatcccctcagagtcgacggcggacgccgccgcg
gaccgggccgagagcccgacgaccccggcgcgcaagcccgcccgccgccgcgcgacgcgc
agcgcggcaccgccgcagacgccccccgcggtgaccgctgcttccgacgtcgccgcgtcc
gcggcggccatcgcggacgcgaccccggcgcccgaggcgcccgtgaccgcacccgtggcc
gaggccacgaccccgcccgcgcgccgctcgcgtcgcgcgacgcgcaccacgccgtccgtc
gccgctccggcggcagacgcggctcccgctgcgtccgccccggccgacgtcccggcggac
gcgagccccgcggccgccgacgccgcggcggagccgccggcggcagagcccgccccgcgc
gcccgcgcgccgcgccgcgcccagggtggcggcaagaaggcgaaggccccggccggcgac
gcgccgctcgacgtcctctccgagttcggcctcagcgcaccgcccgccgccgagcaggcc
ccggccgccacggtggcgcccgacgccgacgccctgctgggagccgccgacgccccgcgc
cgcgcgaagcgcacccgggcgacgcgcacgaccgcgcaggctccggccgtcgaggccgcg
ccggtcgccgagccggacgccccggccgcagacaccgcgccgtccggcgcgccgacgacg
gccgagcccgtcgaggcacccgccgcgaagaagcccgcgcgccggtcgcgccgcgcgacc
tccgcggcagcggccccggccgccgagaccgcggccccgaccgccgagaccgcggccccg
gccgccgaggttgctgccccggcggtggccgacgcgccgtccgccgccgagccgacgccc
gccgaggcagagacgccggcgtccgcggagcccgcgaagaagccggcgcgccgctcgcgc
cgcgccacctcgaagcccgccgaggcggcaccggaggcgaccgccgcggccgacagcacg
gccgcgcccgaggccccggccgctgccgcgtcgtcggccccggccggcggcccggcgtcg
cccgccgcgacgggagcggggaccagcaccccgcgcctggcgacgaccgccctgctcttc
caggcgcccgacccggccgcggcgccgcgccgtccgcgtcgcgcgcagagcccggccggg
ccgccgcgccacgtcgagcccgcagccccggcagccgccacgacggagccggtcgccacg
acggagccggtcgccacgacggagccgacggcgacgcccgagcccaccaccgggacccgc
ggccgtcgcggccggagggcgtcggggcccgcgtcccgcacggccgagccgcgcacgccc
gagtcgcagacggctgagccgtcgacccccgtcgaggagcccgccgccgccgagctcgtc
ctcacgggcgaggacgcggccgcggtcgaggagatcgaggccatcgagtccgagctcgtc
gccgagggcgtcgaggtgcccgaggacgcgttcgggccggaggacttcgtcgagctcgac
gaggcggaggagcccgacgagcagcctgcggccgacgacgccgactccgactccgacgcc
ggcccgcgccgccgccgccgtcgtggtggccgcgggcgtcgtggtcgcccggacggggga
cgtgaccaggaccgcgagcaggaccgcgacgaggacgaggacgacgccacgccgtcggcg
caggacgacgagccggccgacgcggccgcgccggccgacgccgagcagaccgaccacgag
gccggggacgagcagggcgaggacgaggcgggcggcagccgccgccgtcgccgccgccgc
cgcgggagccggggcgagggcgagacgaccacgacgcgctcccgcccgcgcgagcgcagc
ctggccgacgaggtcaccgccctcaagggctccacgcggctcgaggcgaagcgccagcgc
cgccgcgagggccgcgacgcgggtcgtcgtcgccagatcatcaccgaggcagagttcctc
gcgcgccgcgagtcggtcgagcggtcgatggtcgtgcgcgagcgcggcggccgcacgcag
atcgccgtgctcgaggacggcgtgctcgtcgagcactacgtctcgcagcagtcgcaggcg
tcgatggcgggcaacgtgtacctgggccgtgtccagaacgtgctgcccagcatggaggcc
gcgttcatcgacgtcggcaagggacgcaacgccgtcctgtacgcgggcgaggtgaactgg
gacgcggccgggctcgagggccagccgcgccgcatcgagcaggcgctcaagtcgggcgac
tccgtcctcgtgcaggtcaccaaggacccgatcgggcacaagggcgcacgcctcacgtcg
cagatcacgctcgcgggccgctacctcgtgttcgtccccggcggcggcatgaccggcatc
agccgcaagctccccgacaccgagcgcaaccgcctgaagaagatcctcaaggaggtcgtg
cccgacggcgcgggcgtcatcgtgcgcaccgccgccgagggtgcgagcgaggaggagctg
cgcgccgacgtcgagcgcctgcgcggccagtgggaggccatcgagaagaagtcgaagagc
gcgtcggcacccgccctgctccagggcgagccggacctcgcgatccgcgtcgtccgcgac
atcttcaacgacgacttcagctcgctcgtcgtcgagggcgacggggcgtggtcggagatc
tcgacgtacgtcgaggagctcgcgcccgacctgcgcgagcgcgtctcgaagtggacgggc
acgcaggacgtcttcacggtgcaccgcgtcgacgagcagctcgccaagggcatggaccgc
aaggtctggctgccctcgggcgggtcgctggtcatcgaccgcaccgaggcgatgaccgtc
gtcgacgtcaacaccggcaagttcaccggctcgggcggcacgctcgaggagacggtgaca
cgcaacaacctggaggcggccgaggagatcgtccgccagctccggctgcgcgacatcggc
ggcatcatcgtcatcgacttcatcgacatggtgctcgagtcgaaccgcgacctcgtgctg
cgccgcctcgtcgagtgcctgggccgggaccggaccaagcaccaggtcgcggaggtcacg
tcgctgggcctcgtccagatgacgcgcaagcgtgtgggccagggcctcgtcgaggcgttc
agcgagacgtgcgagcactgccacgggcgcgggttcatcgtgcacaccgacccgatcgag
aagtcgggcggcaaccgcggcggccacgaccacggcaaccacggcaacggcaacgggaac
gccgggggcaacgggggcggcgccgccgccgacgagcccgccgagggcggccgctcgcgg
tcgcgccgcaagcgcggttccggctcgggcgcctcggcgccgaaggacaccgggatcacc
ctcccgcagcccgccgtcccggtcctgccggaggtcacgtcggaggcgcgggccgcggtc
aaggccacgctcgcgacgatcgcggcggccgcggcgcacgcccacgagcacgacggcgcc
gaagcaccggcggacggctcggcgcccacggcgggcgacgacagcgggtcggagcccacc
gagagctga
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