Chromobacterium sp. ATCC 53434: CXB49_13280
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Entry
CXB49_13280 CDS
T05234
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
chro
Chromobacterium sp. ATCC 53434
Pathway
chro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CXB49_13280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chro03019
]
CXB49_13280
03009 Ribosome biogenesis [BR:
chro03009
]
CXB49_13280
Enzymes [BR:
chro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CXB49_13280
Messenger RNA biogenesis [BR:
chro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CXB49_13280
Ribosome biogenesis [BR:
chro03009
]
Prokaryotic type
rRNA processing factors
CXB49_13280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AUH51719
UniProt:
A0A2H5DXE2
LinkDB
All DBs
Position
complement(2956817..2959795)
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AA seq
992 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGIITRIEPSLEACFVDY
GTERHGFLPFKEVSRSYFQGYEGGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKDLLSQLEVSHGMSLIARTAGIGRNLEELQW
DLGYLMQLWRAIEGAAGAQSAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTDEIHDQARQ
FMSHVMPNMLSRVKVYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSID
VNSARATKGADIEETAVKTNLEAAEEIARQLRLRDLGGLVVIDFIDMENPKNQRDVENRL
RDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRAEIHSIEERLDVDVVLIPNIHLETPHY
KIVRVRHDDLAELGEAPSYSRVEVQEEDVITNFGQEKPKVERQEAAVKGITPQQPAPTVA
PAAAAAKPVESVGLLAGITAWFKGLFAEPEKAPEPEARKKPAAARNNEQRGNRGRQQERR
TGGQARREHEQRRQGQDDGKPPRRQAEDRAERKDGERAERSERTERKEAPSREREERNEQ
PREPRGNRRRERESREPREAKEVREQAPREERVSEKAEKQDKPQQEPRRRQAPAAAPAEA
VEKPVQEELHLDAEGEQTEQERSERRRRRRRDRRRDTPEAQLDGAAAETGDASLAETAGI
AIAVTAVAAEAVADAAEAKPAETPVAEQAQAAPAPVVATAEAVVEAELAAPVEAVVEAPV
AVAPVVVLESEPEVVVVTPVAVEVADEQALKSEAPQQEAAVEAEPTIQVAEVAPVVVEQA
EPVAETQVEAEALPVAEAVVAPKAAQPVAAPQVEAKPMDLGGLVMVSTKPAQAEALAEPD
LPQGPRRRDVAGATDADAQQSAPLVQVETRNN
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgttcaatgcgacgcaagccgaagagcttcgcgtcgcgattgtcgac
gggcagaagctcgtcgatctcgatatcgagaccgtaggcaaggaacagcgcaaaggcaat
atctacaagggtatcatcacccggatcgagccttcgctggaagcctgcttcgtcgattac
ggcaccgagcgtcacggcttcctgccgttcaaggaagtgtcccgctcctatttccagggc
tatgagggcggtcgtccgcgtattcaggacgtgctgcgcgaaggcatggaagtcgtggtg
caggtggagaaggacgagcgcggcaacaagggcgcggccttgaccacctacatcagcctg
gccggccgttatctggtgctgatgccgaacaatccgcgcggcggcggcgtgtctcgccgc
atcgagggcgaagagcgacaggagctgaaggatctgctgtcgcagctggaagtgtcgcat
ggcatgagcctgatcgcgcgcaccgccggcatcggccgcaatctggaagagctgcagtgg
gaccttggctatctgatgcagctgtggcgcgccatcgagggcgccgccggtgcccagtcc
gcgccgttcctgattctgcaggaaggcagcctggtgatccgcgcgatccgtgactatttc
catccggacatcggcgaagtgctgatcgataccgatgaaattcacgatcaggcccgccag
ttcatgagccatgtgatgccgaacatgctgtcgcgtgtgaaggtgtacaaggatcatgtg
ccgctgttctcccgcttccagatcgaacaccagatcgaaaccgccttctcgcgcagcgtg
cagctgccgtccggcggcgccatcgtgatcgaccataccgaagcgctggtctccatcgac
gtgaactcggctcgcgccaccaagggcgccgacatcgaggaaaccgcggtcaagaccaac
ctggaagcggcggaagagatcgcccgccagctgcgcctgcgcgacctgggcggcctggtg
gtgatcgacttcatcgacatggaaaacccgaagaaccagcgcgacgtggaaaaccgcctg
cgcgacgttctgaagcatgaccgcgcccgcgtgcaaatgggcaagctgtcccgcttcggc
ctgctggagctgtcccgtcagcgtctgcagccgtccttgggcgagaccagccacgagcca
tgtccgcgttgccacggcatcggcttcatccgcggcaccgaatcgtcggcgctgcacatc
ctgcgcatcatccaggaagaggcgatgaaggaaaacaccggcgcggtgcacgcgcaggtg
ccggtggacgtggccaccttcctgttgaacgagaagcgcgccgagatccattcgatcgag
gaacgcctcgacgtcgacgtggtgctgatcccgaacatccatctggaaaccccgcattac
aagatcgtgcgcgtgcgtcacgacgacctggccgaattgggcgaggcgccgagctacagc
cgcgtggaagtgcaggaagaagatgtgatcaccaacttcggccaggaaaagccgaaggtc
gagcgccaggaagccgccgtcaagggcatcacgccgcagcagccggcgccgaccgtcgcg
ccggccgcagccgccgccaagccggttgagtccgttggcctgctggcaggcatcacggcc
tggttcaagggcttgttcgccgagcccgagaaggcgccggagccggaagcccgcaagaag
ccggcggccgcccgcaacaacgagcagcgcggtaaccgcgggcgtcagcaggagcgtcgc
accggcggccaggcccgccgcgagcacgaacagcgccgccagggccaggacgacggcaag
ccgccgcgccgccaggctgaagaccgcgccgagcgcaaggacggcgaacgcgccgaacga
agcgagcgaaccgaacgcaaagaggcgccgagccgcgagcgcgaagagcgcaacgagcag
ccgcgcgagccgcgcggcaaccgtcgccgcgaacgcgagagccgcgagccgcgcgaagcc
aaggaagtccgcgagcaggcgccgcgcgaggagcgcgtgagcgagaaggccgagaagcag
gacaagccgcagcaggagccgcgtcgccgtcaggcgccggccgccgccccggcggaggcc
gtcgagaagccggtgcaggaagagctgcacctggatgccgaaggcgagcagaccgagcag
gagcgcagcgaacgtcgtcgtcgtcgtcgccgcgaccgtcgccgcgacacgccggaagcc
cagcttgacggcgccgccgccgagactggcgacgcctccttggccgaaaccgcaggcatc
gccatcgccgtgacggccgtggccgccgaagcggtggccgacgccgccgaagccaaaccg
gccgaaacgccggtcgccgagcaggcgcaagccgcgccggccccggtggtggcgactgcc
gaagcggttgtcgaagccgagcttgccgcgccggtggaagccgtcgtcgaagccccggtg
gccgttgccccggtagtcgtgctggagtccgaacccgaggtggtggtggtgaccccggtg
gcggtcgaggtggccgatgagcaggcgttgaagtccgaggctccgcagcaagaggcagcg
gtcgaagccgagccgacgatccaggtggcggaagtcgctccggtcgtcgtcgagcaggcc
gagccggtagccgagacccaagtcgaagccgaagcgctgccggtggcggaagccgtcgtg
gcgccgaaggcggcgcagccggtcgcggccccgcaggtcgaggccaagccgatggatctg
ggcggtctggtgatggtgtcgaccaagccggcgcaagccgaggccttggccgagccggat
ctgccgcaaggtccgcgccgccgcgacgtggccggcgcgaccgacgccgacgcgcagcag
tcggcgccgctggtccaggtggagacccgcaacaactga
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