Cobetia sp. AM6: CLAM6_08830
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Entry
CLAM6_08830 CDS
T08724
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAM6_08830 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobe03019
]
CLAM6_08830 (rne)
03009 Ribosome biogenesis [BR:
cobe03009
]
CLAM6_08830 (rne)
Enzymes [BR:
cobe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CLAM6_08830 (rne)
Messenger RNA biogenesis [BR:
cobe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLAM6_08830 (rne)
Ribosome biogenesis [BR:
cobe03009
]
Prokaryotic type
rRNA processing factors
CLAM6_08830 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RecA_C
Motif
Other DBs
NCBI-ProteinID:
BBO55572
UniProt:
A0A5K7Y7U5
LinkDB
All DBs
Position
complement(1056922..1061136)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRIEPSLEACFVDF
GAERHGFLPLKEISREYFSKDPGQGRPNIREVLKEGQEVIVQVDKEERGNKGAALTTFIS
LAGRFLVLMPNNPRAGGISRRIEGEERAQLKEAMNSLTLPDKMGVIVRTAGIGKSAEELQ
WDLDYLAQVWDAVTKAASSRPAPFLIYRESNVIIRAMRDYLRNDIGEVLIDSPEVQEEAL
SFVRQVMPSYQQKIKLYEDDVPLFSRFQIESQIETAYQREVKLPSGGAIVIDHTEALVSI
DINSARATRGSDIEETALQTNLEASDEIARQLRLRDIGGLVVIDFIDMTPARNQREVENR
VRDALKIDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSMALS
IMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRATLFDIERRQGVNVVLLPNPELDTPH
YEVVRLRDDHVDEDGADKSSFELSVETEVGKEPDPNFDKPPARTEAAVKSVSHTTPAPVA
APEAPAAAPAAVAETADSSNDSDSRNGNGKNNGNRRRNGNGSSNGRNRQESRNESRNDTR
SEGRNDSRQSSRNDNRQGNRSSQGNDTRAQASKQEVVAQPSAQTPARTAAPAAGGGLLSR
LARGFSRLLGNDSDTAVPAKSSEARKALEKARERRETVSEASAPAAARNDSRNGRNAERS
NDRNNDRSNDGRGNERDDNRKDSRRRNDNASRNNDGESRNSGNDSRGNDADSSSQNDGRS
NNKRRQRNDRGNRRKSNESRQDSQQEIVTNDSKPQAEPEQTPQADNSPKAEARSSDSQNA
KADNASKRDSGKRSDKPARGEKPAKTDKAEQVDSKQARESIKAAEQAEQVEQQVSSEDQQ
TRNNPRVRSRQHALNPQAVEEQKSLKAMTLAGPQAAAAPAAAAAVPAIAEEGAEAISATT
ATPQGDDSAPQAETSAPQGENSTAAQDAPASAKQSASADLTAAVAPEVSEPSNEALKETV
APESAASDAQASESEPATAEVPEPVVEVPVEAPVEEASEAPVTDAHQAQKTEQHAAQRTE
QHAVQQPSVHQPQASAADDAVDTPAVTAAEVAPEAAADEQSLKESVTSEAAVSEAPAVAE
QGVQAPAAEAQAAEQTEAQAPVAEAEEAIAAEADTASQPAQPVAEEPAVEEPAVEAAAAE
QPVQEAAHEETPQQTETSESKVTQSASATEVASTEIEPAVSTERTADTVAEATEGSQSAE
GSQSAEGSDSADGSDATAEGAESAVNVSASVENAPAEAAFATAERHDNVAVAQAVSDDSH
TGEVADSEHKQAPSEQGEMTAAEGVQQDSTQPATETRRRRGERAYNDPREVRRREREAAE
RAAAQQASAETQDTTAQDDSNTSH
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgcgacccagccggaagagctgcgcgtcgcactggtcgac
ggacaacgcctttacgatctcgacatcgagtccggcgcccgcgaacagaagaaagccaat
atctaccgcggcaagatcacccgcatcgagcccagcctcgaagcctgcttcgtcgacttc
ggcgccgaacgccacggcttcctgccgctcaaggaaatctcccgcgagtacttctccaag
gaccccggccagggccgtcccaacattcgtgaagtgctcaaggaaggccaggaagtcatc
gtccaggtcgacaaggaagaacgtggcaacaagggcgccgccctgaccaccttcatcagt
ctggccggccgcttcctcgtgctgatgcccaacaacccgcgtgccggtggcatctcccgc
cgtatcgagggcgaagagcgcgctcagctgaaggaagcgatgaacagcctgaccctgccg
gacaagatgggcgtcatcgtgcgcaccgctggcatcggcaagagcgccgaagagctgcag
tgggacctcgactatctcgcccaggtgtgggacgcggtgaccaaggccgcttccagccgc
cctgcccccttcctgatctaccgtgaatccaacgtcatcatccgtgccatgcgcgactac
ctgcgcaatgacatcggtgaggtgctgatcgactctccggaagtccaggaagaagcgctt
tccttcgtacgtcaggtgatgccgagctaccagcagaagatcaagctctacgaagacgac
gtgccgctgttctcgcgcttccagatcgaatcccagatcgagaccgcctaccagcgtgaa
gtgaagctgccctccggtggcgccatcgtcatcgaccacaccgaagccctcgtctccatc
gatatcaactccgctcgcgccacccgcggcagtgatatcgaggaaaccgcgctgcagacc
aacctggaggcctccgacgagatcgcccgccagctgcgtctgcgcgacatcggcggcctg
gtggtgatcgatttcatcgacatgacgccggcacgcaaccagcgtgaggtcgagaatcgt
gtgcgcgacgcgctcaagattgaccgcgctcgcgtccagatcggtcgcatctcacgcttc
ggcctgatggaaatgtcgcgtcagcgtctgcgcccctcactgggcgagaccagcggcgtg
gtctgcccgcgttgtgacggccagggcaccatccgtgacgtgcgctccatggcgctctcc
atcatgcgtctgatcgaagaagaggccatgaaggagcgcagctcgcagatccgcgccatc
ctgccggtgccggtcgcgacctacctgctcaacgagaaacgcgccacgctgttcgacatc
gaacgtcgtcagggcgtgaatgtcgtgctgctgccgaacccggaactcgacacgccgcac
tacgaagtcgtgcgtctgcgtgatgaccacgtcgatgaagacggtgccgacaagtccagc
ttcgagctgtccgtcgagaccgaagtcggcaaggaaccggatccgaacttcgacaagccg
ccggcgcgcactgaagcagccgtcaagagcgtgtcccacaccacgcctgccccggttgcc
gcaccggaagcgcctgccgcagcgcccgccgcagtggccgagaccgctgacagcagcaat
gacagcgatagccgcaacggcaacggcaagaacaacggcaatcgtcgtcgcaacggcaac
ggcagcagcaacggtcgcaaccgccaggagtcgcgcaacgagtctcgtaatgacactcgc
agcgaaggccgcaacgacagccgtcagagctcgcgcaatgacaaccgtcagggcaaccgt
tcgagccagggcaatgacacccgcgctcaggccagcaagcaggaagtcgtggcgcagcct
tcagcccagactcccgccaggactgccgctccggccgccggtggcggcctgctgtcgcgc
ttggcccgaggcttcagccgcctgctgggcaatgacagcgacaccgccgtgccggccaag
tccagcgaagcccgcaaggcactggaaaaggcccgcgagcgtcgcgagaccgtcagtgaa
gccagcgctccggcagcggctcgcaacgactcccgcaatggccgcaacgctgaacgtagc
aacgaccgcaacaacgaccgcagcaacgacggccgtggcaatgagcgtgatgacaaccgc
aaggactcccgtcgtcgcaatgacaacgcgtcacgcaacaacgatggcgagtcacgcaac
agcggcaacgattcccgtggcaacgacgctgacagcagcagccagaacgatggccgcagc
aacaacaagcgccgtcagcgcaacgaccgtggcaaccgtcgcaagtccaacgagtcgcgt
caggacagccagcaggaaatcgtcaccaacgacagcaagccgcaggccgaaccggagcag
acgccgcaggctgacaacagcccgaaagccgaagccaggagcagcgacagccagaacgcc
aaggccgacaacgccagcaagcgcgattccggcaagcgcagcgacaagccggcccgtggt
gaaaagccggccaagactgacaaggccgagcaggtcgacagcaagcaggcacgcgagtcc
atcaaggcggccgaacaggccgagcaggtggaacagcaggtcagcagcgaagaccagcag
acccgcaacaacccgcgtgtgcgcagccgtcagcatgctctgaacccgcaggcggtcgaa
gagcagaagtcgctcaaggccatgacgctggcaggcccgcaggccgccgctgctccggca
gccgccgctgcggtgccggccattgccgaggaaggtgccgaagccatcagcgccaccacc
gctaccccgcaaggcgacgacagcgctccgcaggctgaaaccagtgctccgcagggtgaa
aacagcaccgcggcacaggacgcgccggccagcgccaagcagtctgccagcgcagacctc
acggctgccgttgcaccggaagtcagcgagccgagcaacgaggcgctgaaagagacggta
gcgcctgagtcagcggcatccgatgcgcaagcgtctgagtctgagccagcgacagcggaa
gtgcccgagccggtcgtcgaagtacctgtcgaagcaccagtcgaagaggcgtccgaagcg
cctgtcaccgacgctcaccaggcgcagaagactgagcaacacgccgcccagcgcactgag
cagcatgccgtccagcagccaagcgtgcaccagccgcaggccagcgcagctgacgacgcc
gtcgacacgccggccgtcaccgcggcagaagtcgcgccggaagccgcggccgatgagcag
tcgctgaaggaaagcgtgaccagcgaagccgctgtgtctgaagcgccagccgtcgccgag
caaggcgtccaggcaccggccgccgaagcgcaagctgccgagcagaccgaagctcaggca
cctgtcgctgaagcagaggaagcgatcgccgctgaagccgacactgccagccagcctgcg
cagcctgtggcggaagaacctgccgtggaagaacctgccgtggaagcagccgccgctgaa
cagcctgtacaggaggccgcgcacgaagagactcctcagcagactgagaccagcgagtcg
aaggtgacgcaaagcgctagcgctactgaagtggccagcacagagattgagcctgccgtc
agcactgagcgcaccgcagatactgtcgctgaagctacggaaggctctcaatcagctgaa
ggctctcaatcagctgaaggctctgattctgctgacggctctgatgctactgctgaaggt
gccgaaagcgccgtcaacgtcagcgccagcgtcgagaatgcgccggccgaggcagcgttc
gcgactgccgaacgtcacgacaatgtcgccgtggcgcaagccgtgagcgacgactcccat
acaggggaagtcgctgacagcgagcacaagcaggcaccgagcgagcaaggcgagatgaca
gcggcagaaggcgtgcagcaggacagcacgcagccagccaccgagacccgccgtcgccgt
ggcgaacgcgcctacaacgatccgcgcgaagtgcgtcgtcgtgagcgtgaagctgccgag
cgtgctgctgcacaacaggccagcgcagagactcaggacacgaccgctcaggatgacagc
aacacgtctcactga
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