Corynebacterium ulcerans 0102: CULC0102_1804
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Entry
CULC0102_1804 CDS
T02171
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cue
Corynebacterium ulcerans 0102
Pathway
cue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CULC0102_1804 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cue03019
]
CULC0102_1804 (rne)
03009 Ribosome biogenesis [BR:
cue03009
]
CULC0102_1804 (rne)
Enzymes [BR:
cue01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CULC0102_1804 (rne)
Messenger RNA biogenesis [BR:
cue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CULC0102_1804 (rne)
Ribosome biogenesis [BR:
cue03009
]
Prokaryotic type
rRNA processing factors
CULC0102_1804 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
CsoSCA_cat
Motif
Other DBs
NCBI-ProteinID:
BAM28002
LinkDB
All DBs
Position
complement(1944232..1947615)
Genome browser
AA seq
1127 aa
AA seq
DB search
MAEGTTKKAPARRATRKTAEKPAAPEIATVPIDRDAIGERIRVHALAKLASVSSRELIAT
LATLGLTKVAQSTLTREEALKLLDAHHIDTYSAEEKLRHRVEKNVENEIHQIEAKVEREL
NPDAEAAKLDDPEESEKLRRRIEKNVENEIHQIEEKVERELQDREAAQAESASETPADRA
VEDLVVVVTEDEVAELLADIEPEITPAPASEQAVPAFPTPLFIAPTPAEELETHADEAIE
DDEESAQSRRRRRGRRGTGRGKKTETEGASVAEDCEESLDGEGTGGEEPKELITEPVAIK
GSTRLEAQRRRRAEMREESRNKRHIVSEAEFLARRESVKRTMIVRERERSDHPGAVTQVG
VLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWRA
AGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPNGRSAGISR
KLPATERKRLKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWNQIQELTEKEK
SSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSVAPELHDRLVK
FDREAHDGRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGG
NLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLSENQDLVLRRLTEALGRDRTR
HQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEAGVSDTAIEKSSR
ARSGRKNAARDRGVAHQDPARHPAAVAMQHHEEDTSDADNRTSIDDLAAAVVIDDAELEK
VVEAVAGSAEDTTPAEPIKEKKGRRRRRGLRNAKRKDKGATDDVMGIVDAALDRAFEEDP
DEPSGADHLPLADNTLSRSTTATYEEALAAFEASPRRKRAVRGNSTSDHAPKPEDFKHID
ATVDPEAEAPVDEVSEETSTRSRRRSRRVARKRNDVQKAVDTTEQPDVVDDADSTDTSTD
TVKVDSPRGRRGRRRAVRKKLQETSLDNSTSSAAVEESPASARRRRRAVRKALGKSSVKT
PRKSVIGEESSGVYVKGEAGLDAGDASSAGRGRRRVARRVTTAAKRN
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaggaaccacaaaaaaggcgcctgcgcgccgggcaacacgaaagaccgccgag
aagcctgcggcgccggagattgcgacggtacctattgatcgtgatgcgatcggtgagcgg
attagggtgcatgcgctcgctaaattagcgtcggtgagttcgcgcgagctcatcgctact
cttgccacgctagggctgaccaaggttgcgcagtcgacgctgacccgcgaagaagcgtta
aagcttctcgacgcccaccacatcgatacctactcagctgaagaaaagctgcgccatcgg
gtggagaagaacgtggagaatgagatccaccagattgaggcaaaggtcgagcgcgagctt
aacccggatgctgaggccgccaagctggatgatccggaagaatccgagaaattgcgccgg
cggatagaaaagaacgtggaaaatgagatccaccagatcgaggaaaaggtcgagcgcgaa
ctgcaagaccgagaggctgcacaagcagaatctgcatcggagactcctgcagatagagca
gtagaagatctggttgtagtggttaccgaagacgaggtagcggagcttcttgcggatatt
gagccggagattacacctgctcccgcgtcggagcaggctgtccctgctttccccacaccg
ttgttcatcgcgccgaccccagcagaagaattggaaactcatgccgacgaagccatagag
gacgatgaggaatctgcacagtcgcgccgtcgtcgccgtggtcgccggggtactgggagg
ggaaagaagactgagactgagggtgcttctgttgccgaggactgcgaagaatcgctggac
ggcgaaggcacaggtggcgaagaacccaaggaactgatcaccgaaccggtagcgatcaag
gggtctacccgccttgaggctcagcgtcgccgtcgcgcggaaatgcgagaggaatctcgc
aataaacgccacatcgtttctgaggcggagttcttggcgcgcagggaatctgtaaaacgc
accatgattgtgcgcgagcgtgagcgcagcgaccaccccggagcggtgactcaggtgggt
gttctggaagatgatctgctcgtcgagcactttgttaccagcgatacgcagtcgtcaatg
atcggcaacatatatctgggacgcgttcaaaacgtgctgccgagtatggaggccgcgttt
atcgatatcggaaaaggccgcaacggagttctctacgcgggcgaggtggactggcgtgct
gccggcttgggcggccggggacgtcgcattgagcaggccttaaaatctggtgatcaggtg
cttgttcaggtgtccaaggaccctgcaggacacaagggtgcgcgactgaccactcaaatt
tccttcgcgggacgttatttggtgtacgtgcccaacgggcgtagcgcgggtatttctcgc
aagcttcccgctacagagcgcaagcggttgaagaacatcctcaaagaggtggtgcctaaa
gatggcggagctatcatccgcactgctgcggagaacgtttctgcagaggctattgctgcg
gatgtgaatcgactgcacaagctgtggaaccagattcaggagctcacggagaaagagaag
agctccaagggtgctaagccggtcaccatgtatgaagagcccaacatgctggtgaaagtg
gtgcgcgatcttttcaacgaggatttctcggagctgattgtcgacggcgaccgcgcgtgg
aataccgttcacgcttatattcagtcggtggcccctgaactgcatgatcgcctggtcaag
tttgatcgtgaggcgcatgatggccgcgatgcatttgaagtgcaccgcgtagacgagcag
ctgcataaggcgctgtcgcggaaggtgtggcttccttccggtggaaccttggtgatcgat
cgtacggaagcgatgacggtcatcgatgtgaacaccggaaaattcactggtgctggcggt
aacctcgaagaaaccgtgacgcgtaataatcttgaggctgcggaagagatcgtcaggcag
atgcggctgcgcgatcttggtggcatgatcgtcgtggacttcatcgacatggtgctctcc
gaaaatcaggatctggtactgcgccgactcaccgaggcgctggggcgtgaccggacacgt
caccaaatttctgaggtgacgtcgttaggccttgtgcaaatgactcgaaagcggcttggc
acgggcttgctggagacttttgccacggaatgtgagcactgtgagggtcgtggcgtgatc
atccacgatgacccggtagaggccggtgtctcggataccgctattgagaaatcctcgcgt
gcccgttctggaagaaagaacgcagcccgcgatcgcggggttgcccaccaagatccggcg
cggcaccctgcagctgtagcaatgcagcatcatgaagaggacacctctgacgctgataac
cgcactagcatcgatgatcttgcagcggctgttgtgattgatgacgcagagctggagaag
gtcgtagaggccgtggcgggtagcgctgaggacactacgccagcagagcccatcaaagag
aaaaaggggcgcaggcggcgtcgtggcttgcgtaacgccaagcgcaaggacaagggtgca
acagacgatgttatgggcatcgttgacgcggctttggaccgggcttttgaggaagatccc
gacgagccttcgggtgccgatcatctgccgctggcggacaacacactgagccgtagcact
actgccacctatgaggaagcactggctgcgttcgaagcttcgccacggagaaagcgtgcg
gtgcgtggaaactccacatcggatcatgcgccgaagccagaggactttaagcatatcgac
gccaccgtggaccctgaagcagaagcgcctgtagatgaggtctctgaggaaacctctaca
cgtagccgccgtcgctcacgtcgcgttgctaggaagcgtaacgacgttcagaaggctgtg
gacactacagagcagccagatgttgttgatgatgctgactcgacagacacctcgacagac
accgtgaaggtagattccccacggggaaggcgcgggcgccgacgtgccgtgcgtaagaag
ctccaggaaacaagcctcgacaactcgactagcagtgctgcagtagaagaatcgcccgcg
agcgctcggcggcgtcggcgcgcggtgcgtaaagctctggggaagtcctcggtgaaaaca
ccacgtaagtctgttatcggtgaggagtcttccggcgtgtacgtgaaaggtgaggctgga
ctcgacgcgggtgacgcatcatctgcgggtcggggacgtcgacgtgtggcgcgtcgggtg
accacggcggcaaagagaaactaa
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