Denitrificimonas caeni: O6P33_07660
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Entry
O6P33_07660 CDS
T08709
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dce
Denitrificimonas caeni
Pathway
dce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P33_07660 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dce03019
]
O6P33_07660 (rne)
03009 Ribosome biogenesis [BR:
dce03009
]
O6P33_07660 (rne)
Enzymes [BR:
dce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O6P33_07660 (rne)
Messenger RNA biogenesis [BR:
dce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O6P33_07660 (rne)
Ribosome biogenesis [BR:
dce03009
]
Prokaryotic type
rRNA processing factors
O6P33_07660 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WBE24257
LinkDB
All DBs
Position
complement(1599212..1602514)
Genome browser
AA seq
1100 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLFDLDIESGAREQKKSNIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFKKTGENGGGRVNIKDVLTEGQEVIVQVEKEERGNKGAALTTF
ISLAGRYMVLMPNNPRAGGISRRIEGEERNELREALNALNAPADMGLIVRTAGLGRSSQE
LQWDLDYLVQLWTAIKDAAETRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVDAQEE
ALSFIRQVMPQYANKIKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGALVIDPTEALV
SIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVE
DRMRECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGVVCPRCNGQGIIRDVESLS
LAILRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRVRIFILPDDTLET
PHFEVMRLRDDSPEAMSGQSSYEMAPEESEELQPVSATRSLVREEAAVKTSSAERLAPPP
PAASKAAAPVVAKAQPSLFKGLVKSLVGLFASEDAPAAPEAKPEQRERSNTNRNNERRNE
RQQSSNRRRENTRTNRDDERKPRDNNRDNNTRDNNAERDNASQREKPRDNAAQNNRDTSN
DNRRERPQREERPARNERSERNERPTRELRPARDTPEPRNARGNQAQDTANEEKPRAPRQ
QRDNNQSDERPIRQERQERAPHPQPTADTEAELHDVNLTEQNDEQDDTTSTEEERPRRRS
RGQRRRSNRRERQQVDTDSSSTEATETTAKETAGKQPAAEATTAERSTEKTSAAPATDNA
ASSAQVTEVQPAMVKDAAAGRSAVEVVDPAQAAPIAIQQPLLQISEPTPATVAAEKPAPR
TQSQDVKATTEKPAQAKAGPASAEPVAEAVKPSVKPEPTPAKTSEKAEVPAKPAAQSPAP
TATAKPEAPAAPAKKAEQPARPSGRAANDPRERRRLAREAEAKKAAAEQKSAAESKPADA
KSDAVTTKEPVPQAPTASNAAPQNVAGTSQTTAAQPAKKDTPHSAKDADTEAQATAAKQE
QSSKHDAAPAAEQDETKPNA
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcaacctgaagagttgcgtgttgcacttgtcgat
gggcaaaagctctttgaccttgatattgaatcaggggctcgcgaacaaaagaaatccaac
atctataaaggccgtataacccgcgtagaacccagcttagaagcagcatttgttgatttt
ggttctgagcgtcacggcttcctccccctcaaagaaatctcccgcgaatacttcaagaaa
actggcgaaaatggtggcggtcgcgtcaacatcaaagacgttctgactgaaggccaagaa
gttatcgtccaagtcgaaaaagaagagcgcggcaataaaggcgcagcactcaccactttc
atcagcctcgccggccgctacatggtactgatgcctaacaaccctcgggcaggtggtatt
tcccgccgcattgaaggtgaagagcgcaacgaattacgcgaagcactcaacgcgctcaac
gctccagctgacatgggcttaattgtgcgcaccgctggcttagggcgtagcagtcaagaa
ttacagtgggacttggactacctggttcaactttggactgccattaaagacgctgctgaa
acccgcagcgctcccttcttgatctaccaagaaagtaacgtcatcatccgcgctattcgt
gactatttacgccaagatatcggcgaagtactgattgatagcgttgatgcacaagaagaa
gcgttaagctttattcgtcaggtgatgccgcagtacgccaacaaaatcaagctgtaccaa
gacagcgtacccttgtttaaccgcttccaaattgaaagccagatcgaaactgctttccaa
cgcgaagtgaaactgccttctggcggtgcattagtcatcgacccaaccgaagccttagta
tccattgatattaactcagcacgggcgaccaaaggcagcgacatcgaagaaactgctctg
caaaccaacctggaagcggctgaggaaatcgcccgccaactgcgtttgcgtgacattggt
ggcttgatcgtgatcgacttcatcgacatgacgccagcgaaaaaccaacgtgccgttgaa
gatcgcatgcgcgaatgccttgaagctgaccgtgcacgcgtacaagtgggtcgtatctca
cgttttggcttgctagaaatgtcgcgccagcgtctgcgtccatcattaggtgaaagcagc
ggcgtcgtctgcccgcgctgtaacggtcaaggcattatccgcgacgttgaatcattatca
ctggccattctccgcttaattgaagaagaagccctgaaagaccgcaccgcagaagtgcgt
gcccgtgtgcctttccaagttgccgctttcctacttaacgaaaagcgtaatgccatcacc
aaaatcgaattacgtacccgcgtacgcatctttattttgccagatgacactctagaaaca
ccgcatttcgaagtaatgcgcctgcgtgatgacagcccagaggcaatgtccggccagtcc
agctatgaaatggctccggaagaaagcgaagaactgcagccggtcagcgcgacccgctca
ttagtacgcgaagaagctgcggtaaaaaccagcagcgccgaacgccttgctccacctccg
ccagcagccagcaaagccgcagcgccagtggtggccaaggctcaacccagcttatttaaa
ggcctagtgaaatcgttggtcggtttattcgccagcgaagatgcaccagccgcgcctgaa
gctaagccggagcaacgtgagcgcagcaacacaaatcgtaataacgaacgccgcaatgag
cgccaacaatcatcaaaccgccgccgggaaaacacccgcacgaaccgtgacgatgaacgt
aagccacgggacaacaaccgcgacaacaatacccgtgacaacaacgctgaacgcgacaat
gctagtcagcgtgaaaaaccacgtgataacgctgcacaaaacaatcgcgacacaagcaac
gataaccgtcgtgagcgtccgcagcgtgaagaacgtcctgcacgtaatgaacgttccgag
cgcaatgagcgcccgactcgtgaactgcgtccagcacgtgatacgccagaaccgcgtaat
gcgcgtggcaatcaagctcaagatacagctaatgaagagaagccgcgtgcgcctcgtcaa
cagcgtgataacaatcagagcgatgagcgtccgatacgccaggagcgtcaagagcgtgcg
ccacatccacagcccactgctgatacagaagcagagctacacgatgtgaacctaactgag
cagaacgatgaacaagatgacaccacttccaccgaagaagaacgtcctcgtcgtcgctca
cgcggtcaacgtcgtcgcagcaaccgccgcgaacgccaacaagtggatacagactcgagc
agcactgaagcaactgagaccactgcgaaagagactgctggtaagcaacccgcggcagaa
gctacaacagctgagcgcagcactgaaaaaaccagcgcagcacctgctactgacaatgca
gccagcagcgcacaagtcacagaagtgcagccagccatggttaaagatgccgccgccgga
cgcagcgctgttgaagttgtcgaccctgcgcaagcagcaccgattgcaatccaacaacct
ttactgcaaatttcggagccaactccagcaactgtagctgctgaaaaacctgcgccacgc
acgcaaagccaggatgttaaagcaactacggagaaacctgcgcaggctaaagcagggccg
gcatctgcagagcctgttgctgaagcagtaaagccaagcgttaagcctgagcctacacct
gctaaaacgagcgaaaaggcagaagtaccagcaaaacctgcagcgcaatctccagcaccg
acagcaactgcaaaaccagaagcgccagcagcaccggcaaagaaagccgaacaacctgct
cgcccatcgggtcgcgctgctaatgacccgcgtgagcgccgtcgtctagcacgcgaagct
gaagctaaaaaagcagcagctgagcagaaatcagcagctgaaagtaagccagctgacgct
aagtctgatgctgtaacaaccaaagagcctgtaccgcaagctccaacagcaagtaatgcc
gcgccacaaaatgttgcaggcacaagccaaacaacagcagcgcaacccgctaagaaagat
acgccccactccgctaaagatgctgacactgaggcgcaagcgacagcagccaaacaggag
caatcatccaaacatgatgctgctcctgctgccgagcaggacgagaccaagccaaacgct
taa
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