Dietzia psychralcaliphila: A6048_05590
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Entry
A6048_05590 CDS
T05437
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dpc
Dietzia psychralcaliphila
Pathway
dpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6048_05590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpc03019
]
A6048_05590
03009 Ribosome biogenesis [BR:
dpc03009
]
A6048_05590
Enzymes [BR:
dpc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A6048_05590
Messenger RNA biogenesis [BR:
dpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6048_05590
Ribosome biogenesis [BR:
dpc03009
]
Prokaryotic type
rRNA processing factors
A6048_05590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AWH95041
UniProt:
A0A2T5AKN4
LinkDB
All DBs
Position
1253766..1257443
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AA seq
1225 aa
AA seq
DB search
MSDSNLTIDDLNALPEKMRAHAAAKAVGMTSKEFLAAMAGIGVEVRSAQSGVTREVLLTW
FASRGEGGAPASEAAPAVDDAPVEKPSRTSSAENAPAEKAPAKKAAAKKASAEKAPAKKA
PAKKAAAEKPSRETSAEEPSRESSAEEAPAKKAPARKARKAAAEKTAPAAADGPTAEPTT
GKKSTSQAPVRRPLPEMSIVTGEVGTAEPGNRRRSTATPSFSPLFLSPDEAAAKAERERP
ARTKSGGPETSRTGQTRTGQTRPDQPNAGTTDETGTRGDSDTPGTADIPGTADAPETTDA
SKIADASESTDTNDDQNDNGEGGSRRRRRGRRGRGRGRGENFDDQNGEDDENDASTDDSD
DARDDTSGDRRDQRSGGSGGADRRDDSGSADTADGRSESGDESSEDDSDDSDGSPSGSRR
RRRRRRRGGGSGNDDTQASGDDSPDTEVQEQREPRRRPARGGQSAGAGSSTGTSADEVQG
ITGSTRLEAKRQRRRDGRDAGRRRQPILSESEFLARRESVDRVMVVREKQRGDGKGIMTQ
VGVLEDKVLVEHFVTTESARSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW
EAAGLGGKARRIEQALRPGDMVLVQVTKDPIGQKGARLTTQISLAGRFLVYVPDGNSTGI
SRKLPDTERRRLKAILKDVVPEGSGVIIRTAAEGVSEEEIGRDVERLAAQWAEIAEASAK
RTSAGAGTPVALYEEPDLLVKVVRDLFNEDFSSLVIQGDTSWDTVHDYVSKVAPEMTERL
ERYDNPDVDVFATHRVDEQVAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKYTGSGGN
LEETVTKNNLEAAEEIVRQLRLRDVGGMVIIDFIDMVLEANRDLVLRRLTEALGRDRTRH
QVSEVTSLGLVQLTRKKLGTGLVEAFSTPCEHCQGRGLIVHADPVHTESHNADEPGNRRG
RKRGGKGAESDQPDTATPSSSAQKQTPKKDGPAPAAHPAALAISRQEAAQAAAEKAARPE
VVTAEPSAPATTASATAAEPDAPASTVSAEISGTPDSEESDAGVAESADAAGSRPGRRRR
RATRRPADGAIDPVVAAEDAAVAETAETPEDEAAVVAEAAEAVQTVEATEPSAQAVPDSA
AAGGGSDADARSETAGRRPRRRSTRREAGAAVAQATEGESAPVAVVPVEAAPLAEAPPVV
VAEPRQRPARRRATRSTTAPEGGDH
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggattcgaacctgaccatcgacgatctcaatgcgcttccggagaagatgcgcgcg
cacgcggccgccaaggccgtggggatgaccagcaaggagttcctggccgccatggccgga
atcggcgtggaggtcaggagcgcccagtccggcgtgacgcgcgaggtgctgctcacctgg
ttcgccagccgtggggagggcggcgcccccgcgtcggaggctgctcccgccgtggacgac
gcaccggtggagaagccctcccgcacgtcctcggcagagaacgcccccgccgagaaggcc
cccgccaagaaggccgccgcgaagaaggcatcggccgagaaggctccggcgaagaaggct
ccggcgaagaaggctgcagccgagaagccctcccgcgagacctcggcggaggagccctcc
cgcgagtcgtcagccgaggaggccccagcgaagaaggcccccgccaggaaggcgcgcaag
gccgcggcggagaagacggcacccgccgccgcggacggtcccaccgcggaacccacgacc
ggaaagaagtccacgtcgcaggctccggtccgtcgaccccttccggagatgtcgatcgtg
accggtgaggtgggcaccgcggagccgggcaaccgccgccggtccaccgcgaccccctcg
ttctccccgctgttcctctctcccgacgaggccgccgccaaggccgagcgggagcgcccc
gcgcgcacgaagtccggtggacccgagacgtcgcgcaccggacaaacccggaccgggcaa
acccggccggaccagccgaacgccgggaccacggacgagacgggaacccggggcgactcc
gacacccccgggacggctgacatccccggcaccgccgacgccccggagaccaccgacgcc
tccaagatcgccgacgcctcggagtccaccgacaccaacgacgaccagaacgacaacggt
gagggtggtagccgtcgccgccggcgtggccgtcgcggccgcgggcgtggccggggcgag
aacttcgacgaccagaacggcgaggacgacgagaacgacgcgtcgacggacgactccgat
gacgcccgcgacgacacctccggtgaccgccgggaccagcgttccggcggctccggcggc
gctgaccgtcgtgacgactccggctcggcggacacggccgacgggcggtccgagtcgggg
gacgagtcctccgaggacgactccgacgactccgacgggtcaccgtccgggtcgcgtcgg
cgtcgccgtcgtcgtcgtcgtggtgggggttcgggcaacgacgacacccaggcctccggc
gacgactctcccgacaccgaggtccaggagcagcgcgagccgcgccgtcgccccgcacgc
gggggacagagcgcgggcgcgggttcgagcaccggtacgtccgcggacgaggtccagggc
atcaccggctcgacccggctcgaggccaagcgccagcgtcgccgcgacgggcgcgatgcc
ggccgccgccgtcagcccatcctctccgagtcggagttcctcgcacgccgcgagtccgtc
gaccgcgtgatggtggtccgggagaagcagcgcggcgacggcaaggggatcatgacccag
gtcggcgtgctcgaggacaaggtcctggtggagcacttcgtcaccaccgagtccgcgcgc
tccatggtgggcaacgtctacctcggccgtgtgcagaacgtgctgccgagcatggaggcc
gcgttcgtcgacatcggccgcggtcgcaacggcgtcctgtacgccggtgaggtcaactgg
gaggctgccgggctcggcggcaaggcccggcggatcgaacaggcgctcaggcccggtgac
atggtcctggtgcaggtcaccaaggatcccatcggtcagaagggcgcccgcctgaccacg
cagatctcgctggccggccgattcctcgtgtacgtgcccgacgggaactccaccggcatc
tcccgcaagctccccgacaccgagcggcgccggctcaaggcgatcctcaaggacgtcgtc
cccgagggctcgggcgtgatcatccggaccgcggccgagggggtcagcgaggaggagatc
ggccgggacgtcgaacgactggcggcccagtgggccgagatcgccgaggcctccgccaag
cggacctccgccggcgccggcaccccggtggccctgtacgaggagcccgacctgctggtc
aaggtggtgcgggacctgttcaacgaggacttctcctcactggtgatccagggcgacacc
tcctgggacaccgttcacgactacgtctcgaaggtcgcaccggagatgaccgagcgcctg
gagcggtacgacaaccccgacgtcgacgtgttcgccacccaccgcgtggacgagcaggtg
gccaaggcgctcgaccgcaaggtgtggctgccctccggcggctcgctggtgatcgaccgc
accgaggccatgacggtcatcgacgtcaacaccggcaagtacaccggctcgggcggcaac
ctcgaggagaccgtcaccaagaacaacctcgaggcggccgaggagatcgtccgccagctg
cgcctgcgcgacgtgggcggaatggtgatcatcgacttcatcgacatggtcctcgaggcc
aaccgcgacctggtcctgcgccgactcaccgaggcgctgggtcgcgaccgcacccggcac
caggtctccgaggtcacctcgctgggtctggtccagctcacccggaagaagttgggcacg
ggcctcgtcgaggcgttctccacgccgtgcgagcactgccagggccgcggactgatcgtg
cacgccgacccggtccacaccgagtcgcacaacgccgacgagcccggtaaccgacgtggc
cgcaagcgcggcggcaagggtgcggagtcggatcagcccgataccgcgaccccctcgtca
tccgcgcagaagcagacgcccaagaaggacgggcccgcaccggccgcgcatccggccgct
ctcgcgatctcccgtcaggaggccgctcaggccgccgcggagaaggcggcgcgtccggag
gtcgtcaccgctgaaccgagcgcaccggcgaccacggcatcggcgaccgccgcggaaccg
gacgccccggcgtccaccgtttccgcggagatctccggcaccccggattccgaggaatcg
gatgctggagtggcagagtccgcggacgccgccggctcccgtccgggtcgccgccgtcga
cgcgccacccgccgcccggcggacggggccatcgacccggtcgtcgccgcggaggacgcg
gcagtggcggagacggccgagacgccggaggacgaggccgcggtcgtggcggaggcggca
gaggccgtgcagacggtcgaggccaccgagccgagcgcgcaggcggtcccggactccgcc
gcggcaggcggagggtcggacgccgacgcacggtcggagacggccggacgacgtccccgc
aggcggtccacccgacgcgaggcaggcgccgcggtcgcgcaggcgacggagggggagtcc
gcgccggtggcggtggtccccgtcgaggccgccccgctcgcggaggcgcccccggtcgtc
gtcgcggagccgcgtcagcgaccggcccggcgacgcgcgaccaggtccacgaccgccccc
gagggcggcgatcactag
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