KEGG   Dietzia psychralcaliphila: A6048_05590
Entry
A6048_05590       CDS       T05437                                 
Name
(GenBank) ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
dpc  Dietzia psychralcaliphila
Pathway
dpc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dpc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A6048_05590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dpc03019]
    A6048_05590
   03009 Ribosome biogenesis [BR:dpc03009]
    A6048_05590
Enzymes [BR:dpc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     A6048_05590
Messenger RNA biogenesis [BR:dpc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A6048_05590
Ribosome biogenesis [BR:dpc03009]
 Prokaryotic type
  rRNA processing factors
   A6048_05590
SSDB
Motif
Pfam: RNase_E_G HC2 IF2_N
Other DBs
NCBI-ProteinID: AWH95041
UniProt: A0A2T5AKN4
LinkDB
Position
1253766..1257443
AA seq 1225 aa
MSDSNLTIDDLNALPEKMRAHAAAKAVGMTSKEFLAAMAGIGVEVRSAQSGVTREVLLTW
FASRGEGGAPASEAAPAVDDAPVEKPSRTSSAENAPAEKAPAKKAAAKKASAEKAPAKKA
PAKKAAAEKPSRETSAEEPSRESSAEEAPAKKAPARKARKAAAEKTAPAAADGPTAEPTT
GKKSTSQAPVRRPLPEMSIVTGEVGTAEPGNRRRSTATPSFSPLFLSPDEAAAKAERERP
ARTKSGGPETSRTGQTRTGQTRPDQPNAGTTDETGTRGDSDTPGTADIPGTADAPETTDA
SKIADASESTDTNDDQNDNGEGGSRRRRRGRRGRGRGRGENFDDQNGEDDENDASTDDSD
DARDDTSGDRRDQRSGGSGGADRRDDSGSADTADGRSESGDESSEDDSDDSDGSPSGSRR
RRRRRRRGGGSGNDDTQASGDDSPDTEVQEQREPRRRPARGGQSAGAGSSTGTSADEVQG
ITGSTRLEAKRQRRRDGRDAGRRRQPILSESEFLARRESVDRVMVVREKQRGDGKGIMTQ
VGVLEDKVLVEHFVTTESARSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEVNW
EAAGLGGKARRIEQALRPGDMVLVQVTKDPIGQKGARLTTQISLAGRFLVYVPDGNSTGI
SRKLPDTERRRLKAILKDVVPEGSGVIIRTAAEGVSEEEIGRDVERLAAQWAEIAEASAK
RTSAGAGTPVALYEEPDLLVKVVRDLFNEDFSSLVIQGDTSWDTVHDYVSKVAPEMTERL
ERYDNPDVDVFATHRVDEQVAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKYTGSGGN
LEETVTKNNLEAAEEIVRQLRLRDVGGMVIIDFIDMVLEANRDLVLRRLTEALGRDRTRH
QVSEVTSLGLVQLTRKKLGTGLVEAFSTPCEHCQGRGLIVHADPVHTESHNADEPGNRRG
RKRGGKGAESDQPDTATPSSSAQKQTPKKDGPAPAAHPAALAISRQEAAQAAAEKAARPE
VVTAEPSAPATTASATAAEPDAPASTVSAEISGTPDSEESDAGVAESADAAGSRPGRRRR
RATRRPADGAIDPVVAAEDAAVAETAETPEDEAAVVAEAAEAVQTVEATEPSAQAVPDSA
AAGGGSDADARSETAGRRPRRRSTRREAGAAVAQATEGESAPVAVVPVEAAPLAEAPPVV
VAEPRQRPARRRATRSTTAPEGGDH
NT seq 3678 nt   +upstreamnt  +downstreamnt
gtgtcggattcgaacctgaccatcgacgatctcaatgcgcttccggagaagatgcgcgcg
cacgcggccgccaaggccgtggggatgaccagcaaggagttcctggccgccatggccgga
atcggcgtggaggtcaggagcgcccagtccggcgtgacgcgcgaggtgctgctcacctgg
ttcgccagccgtggggagggcggcgcccccgcgtcggaggctgctcccgccgtggacgac
gcaccggtggagaagccctcccgcacgtcctcggcagagaacgcccccgccgagaaggcc
cccgccaagaaggccgccgcgaagaaggcatcggccgagaaggctccggcgaagaaggct
ccggcgaagaaggctgcagccgagaagccctcccgcgagacctcggcggaggagccctcc
cgcgagtcgtcagccgaggaggccccagcgaagaaggcccccgccaggaaggcgcgcaag
gccgcggcggagaagacggcacccgccgccgcggacggtcccaccgcggaacccacgacc
ggaaagaagtccacgtcgcaggctccggtccgtcgaccccttccggagatgtcgatcgtg
accggtgaggtgggcaccgcggagccgggcaaccgccgccggtccaccgcgaccccctcg
ttctccccgctgttcctctctcccgacgaggccgccgccaaggccgagcgggagcgcccc
gcgcgcacgaagtccggtggacccgagacgtcgcgcaccggacaaacccggaccgggcaa
acccggccggaccagccgaacgccgggaccacggacgagacgggaacccggggcgactcc
gacacccccgggacggctgacatccccggcaccgccgacgccccggagaccaccgacgcc
tccaagatcgccgacgcctcggagtccaccgacaccaacgacgaccagaacgacaacggt
gagggtggtagccgtcgccgccggcgtggccgtcgcggccgcgggcgtggccggggcgag
aacttcgacgaccagaacggcgaggacgacgagaacgacgcgtcgacggacgactccgat
gacgcccgcgacgacacctccggtgaccgccgggaccagcgttccggcggctccggcggc
gctgaccgtcgtgacgactccggctcggcggacacggccgacgggcggtccgagtcgggg
gacgagtcctccgaggacgactccgacgactccgacgggtcaccgtccgggtcgcgtcgg
cgtcgccgtcgtcgtcgtcgtggtgggggttcgggcaacgacgacacccaggcctccggc
gacgactctcccgacaccgaggtccaggagcagcgcgagccgcgccgtcgccccgcacgc
gggggacagagcgcgggcgcgggttcgagcaccggtacgtccgcggacgaggtccagggc
atcaccggctcgacccggctcgaggccaagcgccagcgtcgccgcgacgggcgcgatgcc
ggccgccgccgtcagcccatcctctccgagtcggagttcctcgcacgccgcgagtccgtc
gaccgcgtgatggtggtccgggagaagcagcgcggcgacggcaaggggatcatgacccag
gtcggcgtgctcgaggacaaggtcctggtggagcacttcgtcaccaccgagtccgcgcgc
tccatggtgggcaacgtctacctcggccgtgtgcagaacgtgctgccgagcatggaggcc
gcgttcgtcgacatcggccgcggtcgcaacggcgtcctgtacgccggtgaggtcaactgg
gaggctgccgggctcggcggcaaggcccggcggatcgaacaggcgctcaggcccggtgac
atggtcctggtgcaggtcaccaaggatcccatcggtcagaagggcgcccgcctgaccacg
cagatctcgctggccggccgattcctcgtgtacgtgcccgacgggaactccaccggcatc
tcccgcaagctccccgacaccgagcggcgccggctcaaggcgatcctcaaggacgtcgtc
cccgagggctcgggcgtgatcatccggaccgcggccgagggggtcagcgaggaggagatc
ggccgggacgtcgaacgactggcggcccagtgggccgagatcgccgaggcctccgccaag
cggacctccgccggcgccggcaccccggtggccctgtacgaggagcccgacctgctggtc
aaggtggtgcgggacctgttcaacgaggacttctcctcactggtgatccagggcgacacc
tcctgggacaccgttcacgactacgtctcgaaggtcgcaccggagatgaccgagcgcctg
gagcggtacgacaaccccgacgtcgacgtgttcgccacccaccgcgtggacgagcaggtg
gccaaggcgctcgaccgcaaggtgtggctgccctccggcggctcgctggtgatcgaccgc
accgaggccatgacggtcatcgacgtcaacaccggcaagtacaccggctcgggcggcaac
ctcgaggagaccgtcaccaagaacaacctcgaggcggccgaggagatcgtccgccagctg
cgcctgcgcgacgtgggcggaatggtgatcatcgacttcatcgacatggtcctcgaggcc
aaccgcgacctggtcctgcgccgactcaccgaggcgctgggtcgcgaccgcacccggcac
caggtctccgaggtcacctcgctgggtctggtccagctcacccggaagaagttgggcacg
ggcctcgtcgaggcgttctccacgccgtgcgagcactgccagggccgcggactgatcgtg
cacgccgacccggtccacaccgagtcgcacaacgccgacgagcccggtaaccgacgtggc
cgcaagcgcggcggcaagggtgcggagtcggatcagcccgataccgcgaccccctcgtca
tccgcgcagaagcagacgcccaagaaggacgggcccgcaccggccgcgcatccggccgct
ctcgcgatctcccgtcaggaggccgctcaggccgccgcggagaaggcggcgcgtccggag
gtcgtcaccgctgaaccgagcgcaccggcgaccacggcatcggcgaccgccgcggaaccg
gacgccccggcgtccaccgtttccgcggagatctccggcaccccggattccgaggaatcg
gatgctggagtggcagagtccgcggacgccgccggctcccgtccgggtcgccgccgtcga
cgcgccacccgccgcccggcggacggggccatcgacccggtcgtcgccgcggaggacgcg
gcagtggcggagacggccgagacgccggaggacgaggccgcggtcgtggcggaggcggca
gaggccgtgcagacggtcgaggccaccgagccgagcgcgcaggcggtcccggactccgcc
gcggcaggcggagggtcggacgccgacgcacggtcggagacggccggacgacgtccccgc
aggcggtccacccgacgcgaggcaggcgccgcggtcgcgcaggcgacggagggggagtcc
gcgccggtggcggtggtccccgtcgaggccgccccgctcgcggaggcgcccccggtcgtc
gtcgcggagccgcgtcagcgaccggcccggcgacgcgcgaccaggtccacgaccgccccc
gagggcggcgatcactag

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