Daphnia pulex (common water flea): DAPPUDRAFT_116674
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Entry
DAPPUDRAFT_116674 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K08527
retinoic acid receptor alpha
Organism
dpx
Daphnia pulex (common water flea)
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dpx03000
]
DAPPUDRAFT_116674
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
dpx03310
]
DAPPUDRAFT_116674
Transcription factors [BR:
dpx03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
DAPPUDRAFT_116674
Nuclear receptors [BR:
dpx03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
DAPPUDRAFT_116674
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-ProteinID:
EFX66151
JGI:
Dappu1_116674
UniProt:
E9HQ36
LinkDB
All DBs
Position
Unknown
AA seq
561 aa
AA seq
DB search
MEFIAEAVHASIDLTQTDYHDTVNDFSPPRASSPVPTPVDHSHPDHDSYPTAFYRPENVQ
QQPEVLPSHYAAPPLECTTLEPTVSNVEIENSYGDMIANGMRVMHFMDHRPFDVFHHQQH
HYSSHYLPMTHYPPGYHPPVDGLTPEPYPPINSPASFSPHIIVPQPVLHNNSSNSNSSAN
SVGFQPYQSPHSQQCVDSNVIQMKSSNECDTSSDEQYGSYHIEMPPCSVCGDISCGIHYG
VVVCEGCKGFFRRANLRTPEEPAFICFYSSNCVVNRSNRNKCRACRLRRCYEVGMVFGDG
CELSKKRRRNRYGLSQDPPLPPPIHCRPRSLPSPDVLEWMGFVVAAQSASFTSVSEIFAS
RYAAVSSLGPDQLWPPCGDLSHHGYQAIQHFAHSLPFIAFLPPDLRAYLLETNALDVMIL
RLTFRFCLDRESFLFPTGAEVTKACLSSTLLGSTVANRLANLGRLVFRLGIGSDEMAFLS
ALALLSSDAMNDGSLHGYAPMLNDIANKVLQAFQYFVGQRWSTRPFFIGKLVALLSDIRA
LQHSVALQTWLAPTGSSSHSV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggagtttatcgcagaggcggtgcatgcttcgattgatctcacccaaacggattatcac
gacaccgtgaacgatttttcacctcctcgtgcgtcatcaccagttccaacgccggttgat
cattctcatcctgatcacgattcctatcctactgcattttatcgcccagagaacgtccag
caacaaccagaggtcttaccatctcattacgctgcgcctccattagaatgtacaaccttg
gaacccactgtcagcaatgtagaaattgagaactcttacggcgatatgattgcaaatgga
atgcgtgtcatgcactttatggatcatcgcccatttgacgtgtttcatcatcagcagcat
cattattctagtcactatttacccatgacgcattacccgcccggttatcatccaccagtg
gatggactaacgccggaaccttaccctcccattaattcgccagcgtcattttctccacat
ataattgtacctcaacccgtactccacaataacagcagcaatagtaactcttctgctaat
tcagtcggatttcaaccttaccaatcacctcattcacagcagtgtgtcgattcgaatgta
atccaaatgaagagttcaaacgagtgtgacacaagcagtgacgagcaatatggcagttac
cacatcgagatgccaccatgtagtgtttgtggtgacatcagttgcggcattcattacgga
gttgtggtttgtgaaggctgcaagggctttttccgacgagcgaatttaagaaccccagaa
gagccggcgtttatatgcttttacagttcaaactgtgtcgtcaatcgttcaaatcgaaat
aaatgtcgagcttgtcgattgcgtcggtgctacgaagttggaatggtttttggtgatgga
tgcgagttgagcaaaaagcgccgtcgaaatcgatatggactgtcacaggatccacctctc
ccaccaccgattcattgtcggccgcggtcactgccatcgccggacgtactagaatggatg
ggtttcgttgtagcagctcaatcggcaagttttacttccgtttctgaaatattcgcttca
aggtatgctgccgtctcgtcattaggtccggatcaactgtggccaccttgcggggatctc
agtcatcacggttatcaggctatccaacattttgcccattctctaccgtttatcgctttc
ttgcctcctgatttgcgagcttacctgttagaaacgaatgcacttgatgtgatgattttg
cgactaacttttcgcttttgcttggatcgtgaatcctttctttttccgactggagctgaa
gttacaaaggcttgtctctcttccacactcttgggtagcacggtagccaatcgtcttgcc
aatctaggtcgactggtgtttcgattgggtatcggttccgatgaaatggcctttttgtca
gcgcttgctctactctcgtcggacgctatgaatgacggatccctgcatggctacgcacct
atgctaaacgatattgccaataaagttttgcaggcgtttcaatactttgttggacaacgt
tggtcaacccggccttttttcatcgggaaattggtcgctcttctatctgatatccgagct
ctacagcattccgtcgcactacaaacatggcttgcaccgactggctccagttcgcacagc
gtttaa
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