Shimwellia blattae: EBL_c24220
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Entry
EBL_c24220 CDS
T02111
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ebt
Shimwellia blattae
Pathway
ebt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBL_c24220 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ebt03019
]
EBL_c24220 (rne)
03009 Ribosome biogenesis [BR:
ebt03009
]
EBL_c24220 (rne)
Enzymes [BR:
ebt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EBL_c24220 (rne)
Messenger RNA biogenesis [BR:
ebt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EBL_c24220 (rne)
Ribosome biogenesis [BR:
ebt03009
]
Prokaryotic type
rRNA processing factors
EBL_c24220 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AFJ47511
UniProt:
I2BAF7
LinkDB
All DBs
Position
2476194..2479448
Genome browser
AA seq
1084 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEVPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWDAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKILELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTNEVHAIVPVPIASYLLNEKREAVSAIEQRQGGVRCIIVPNDQME
TPHYHVLRVRKGEEIKALSYKLPQIHEEAMAQELDEPQAERKVPEEPALAAFIMPEAPPM
PAETAAKPAARTAPAATSSAAQPQPAAPGLFSRLFAALKRLFGGGEAPVVETVVEEVKAP
KAEPRQQERRERNNNRRDRNNNRRDRSDRNGREDRDNRDTRAERQDNREPRDNREPREDN
RRNRRQAQAQNADVQPQSRQSTTDEQEKPREQQPRRERNRRRSDDKRQAQQEVKALQRDE
ALAQPVATPQDAAAPEERVQVMPRRKQRQLTRKVRFDNDAQPAAATEQPATEEMRALPTV
KPVDPSVLPAVVPPVAEEHNEHQQDNRGDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYP
THSPMPLSIACASPELASGKAWIHYPIATGHQPEADIAEVVTETANDQPIVLPASHETQA
TEQPTPVVAETRAPAVEEPAAEVQVADVQATEAPAAEIAPEAPAAAQPEPIASGDVTEPR
DENAQVTEARPAAEPVVSAPEPVAEPVAEPVVAREAQPAQAEEAPAAPAPQAKPAPVTEA
PAQVSHALHGLASAPMTKAPAPHYTPEAPRHSDWVRPAFAFDGEGSAGGHSATHQASAPA
GKPQ
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgtcgcccttgttgat
gggcaacgcctgtatgatctggatatcgaaagcccgggtcatgaacagaaaaaagcgaac
atctacaaaggcaaaattacccgtattgaacccagccttgaggccgcatttgtcgattac
ggtgctgagcgtcatggtttcctcccgctgaaagaaattgcccgcgaatacttcccgtct
aactattcctcccatggtcgtccgaacatcaaagatgtgctgcgtgaaggccaggaagtt
atcgttcagatagacaaagaagagcgtggtaacaaaggcgccgcattaaccacatttatc
agcctggccggtagctacctggtgctgatgccgaacaacccgcgtgcgggcggtatctcc
cgccggatcgaaggcgacgaccgtactgaactgaaagaggcgctggcgtctctggaagtg
ccggacggcatgggcctgattgtacgtaccgccggggtgggtaaatccgccgaagcgcta
cagtgggacctgagcttccgtttaaaacactgggacgctatccagaaagccgcagagagc
cgcccggcgccgttcctgatccatcaggaaagtaacgttatcgtgcgcgcgttccgtgac
tacctgcgccaggatatcggcgaaattcttatcgataatccgaaaatccttgagctggcg
cgccagcacattgccgccctgggccgcccggatttcagcagcaaaattaagctctacacc
ggtgaaattccgctgttcagccactaccagatagaatcccagattgagtccgccttccag
cgtgaagtgcgcctgccctccggtggctctattgttatcgacagcaccgaagcgctgacc
gcaatcgatattaactccgcccgggccacccgcggtggcgacatcgaagaaaccgccttc
aataccaaccttgaagcggctgatgaaatcgcccgccagctgcgcctgcgcgacctcggc
ggcctgattgtcatcgactttatcgacatgaccccggttcgccaccagcgcgcggtagaa
aaccgcctgcgcgaagcggtgcgccaggacagagcccgcattcagataagccatatttcc
cgcttcggcctgctggagatgtcccgccagcgcctgagcccgtcgctgggtgaatccagc
catcacgtgtgcccgcgctgtagcggcaccggcaccgtgcgcgacaacgaatccctttcg
ctgtcgattctgcgccttattgaagaagaagcgctcaaagagaacaccaatgaagtgcat
gccattgttccggtgccgattgcctcttacctgctgaacgaaaaacgcgaagcggtaagc
gccattgagcagcgccagggcggcgtgcgctgcattatcgtgcccaatgatcagatggaa
accccgcactaccacgtactgcgggtacgcaaaggcgaagagatcaaagcactgagctac
aagctgccgcagatccacgaagaggccatggcgcaggagctcgacgagccgcaggctgag
cgtaaagtgccggaagagcccgcactggccgcctttattatgccagaagcaccgccgatg
cccgccgaaacggccgcaaaacctgccgccagaaccgccccggcggcaaccagcagcgca
gcccagccgcagcctgcggcccctggcctgttcagccgcctctttgcggcattaaaacgc
ctgtttggtggtggcgaagcgccggttgtggaaaccgttgttgaggaagtaaaagccccc
aaagcggagccgcgccagcaggagcgtcgcgagcgtaacaacaatcgccgcgaccgcaac
aataaccgccgtgaccgcagcgatcgcaacggccgggaggatcgggacaaccgcgatacc
cgcgcagagcgccaggataaccgcgagccgcgtgacaaccgggagccccgcgaggacaac
cgccgcaaccgtcgtcaggctcaggcgcaaaacgccgatgtccagccgcagagccgccag
agcaccacggatgagcaggaaaaaccgcgtgagcagcagccgcgccgtgagcgtaaccgc
cgccgcagcgacgataagcgccaggcccagcaggaagttaaagcgctgcagcgtgatgag
gccctggcccagcctgttgccacaccgcaggacgccgccgcaccggaagaacgcgtacag
gtaatgccgcgccgtaaacagcgccagctgacccggaaagtgcgttttgataacgacgcc
cagcctgccgcagccacagagcagcccgcaacggaagagatgcgcgccctgcctacggtg
aagccggtcgatccgtctgtgcttccggcagtggttccgccagtggctgaagagcataac
gagcatcagcaggataatcgcggcgataacgccgggatgccgcgccgctcacgccgctct
ccgcgccatctgcgggtcagtggtcagcgtcgccgtcgctaccgtgacgagcgttaccca
acccactcaccgatgccgctgagcattgcctgtgcctccccggagctggcctctggtaaa
gcctggatccactaccccatcgccactggccaccagccggaagcagacattgcggaagtg
gtcactgaaacggcaaatgaccagccgatcgtactgccagccagccatgagacgcaggcc
acagagcagccgaccccggtggtcgccgaaacccgcgccccggccgtagaagaacctgct
gctgaagtacaggtagcagacgtgcaggcaactgaagccccggcggctgagattgcgcct
gaagcaccggccgccgcacagcctgaaccgatagccagtggtgatgtgaccgaaccccgt
gacgaaaacgcacaggtaacggaagcccgccctgcggctgagccggtcgtcagtgccccg
gaaccggtagcagagcctgttgctgagccggtcgtcgcccgcgaagcgcagcctgctcag
gccgaagaagcgcccgcagcaccggctccgcaagccaaaccggcaccggtaacggaagcc
ccggctcaggtcagccacgcgctgcacggtctggcaagcgcccccatgaccaaagcgcct
gcgccgcactacacgcctgaagccccgcgccacagtgactgggtgcgcccggcctttgcc
ttcgacggtgaaggcagcgccggtggccacagcgccacccaccaggcgagcgcgccagca
ggtaagccgcaataa
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integrated database retrieval system
