Edwardsiella piscicida C07-087: ETAC_10020
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Entry
ETAC_10020 CDS
T02509
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAC_10020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etc03019
]
ETAC_10020
03009 Ribosome biogenesis [BR:
etc03009
]
ETAC_10020
Enzymes [BR:
etc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ETAC_10020
Messenger RNA biogenesis [BR:
etc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETAC_10020
Ribosome biogenesis [BR:
etc03009
]
Prokaryotic type
rRNA processing factors
ETAC_10020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
potato_inhibit
Motif
Other DBs
NCBI-ProteinID:
AGH74125
LinkDB
All DBs
Position
2272159..2275335
Genome browser
AA seq
1058 aa
AA seq
DB search
MDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYF
PSNYSAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG
ISRRIEGDDRTELKEALSSLQIPDGMGLIVRTAGVGKSAEALQWDLSFRLKHWDAIKKAA
EGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKQHIAALGRPDFSSKIKL
YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEET
AFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQDRARIQIGR
ISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLALSILRLIEEEALKENTRE
VHAIVPVPVASYLLNEKRDAVSAIEKRQPDVRVIVVPNEQMQTPHYAVMRVRKGEETHTL
SYKLPQLHEAEACGEEEVPAERKRPEQPALAAFSLDVAAPPIDAAQDKPVAVDVAPTERP
QPVADARPGLFGRLVASLKGIFAGDDAPAPVQEDKPAASAERPREESRSSQERRGRRQNP
RRERGERGDRPERGERPERGERPERGERPERANRDGRENRDEQRRGRRQAQPTPVTENGV
EENAQQREEQQQREEQQQRREQRNERQRRRQEEKRQAQQEVKALDSAAQPEEEIAEESVP
AQRRQRRQLSQKIRIGESASAVVSADADAAVAPVADATAAPALPVVSAQPQESAAVAAEE
DNAPRHENGMPRRSRRSPRHLRVSGQRRRRYRDERYPQQSPMPLTLAVYSPEMASGKVWI
SYPIATPAAVESVEREAPRATEESATAVAVETLAAAPVEAARPSVTAETVVNDAVAAEPV
VQAIIAPAAAVEEPTRDAIAQQPAPVVAEESAAHAVCAAAAPTLEEALPALAQAEAQAAE
AEAEAEAEAEAEAEAEAEASVVDAQVQPSAMAPSDTHEHGRASAPMTTAPAPAYVAPVTV
VSTWVRPEYDFHGRGAAGADAATNQAAAPATKPVMPQE
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
gtggatggtcagcgactgtacgatctggatattgaaagcccgggtcacgaacagaagaaa
gcaaacatttacaagggtaaaatcacccgtattgagcccagtctggaagcagcctttgtt
gactacggcgccgaacgacacggtttcctgccccttaaagagatcgcccgcgaatatttc
cccagcaactactccgcccacggccgtcccaacattaaggacgtgctgcgcgaagggcag
gaggtcattgttcaggttgataaggaagagcgcggcaacaaaggggctgcgctgaccacc
tttatcagcctggcgggcagctatctggtgctgatgcccaacaacccgcgcgccggcggt
atctcccgccgtatcgagggcgatgaccgcaccgagctgaaggaagcgctctcctctctg
cagattcccgacggcatggggctgatcgtccgcaccgccggcgtcggcaaatccgccgaa
gccctgcagtgggatctctccttccgcctgaagcactgggacgccatcaagaaagccgcc
gaaggccgctctgcgccgttcctgatccatcaggaaagcaacgtcatcgtccgcgccttc
cgcgactatctgcgcccggacatcggcgaaatcctgatcgataacccgaagatcctcgac
ctggccaagcagcatatcgccgccctgggccgtccggacttcagcagcaaaatcaagctg
tacaccggggaaatcccgctgttcagccactatcagatcgagtcacagatcgagtccgcc
ttccagcgtgaagtccgcctgccctccggcggctctatcgttatcgacagcaccgaggcg
ctgaccgccatcgatatcaactccgcccgcgctacccgcggcggcgatatcgaagagacg
gcgttcaacaccaacctggaagccgccgatgaaatcgcccgccagctgcgtctgcgcgac
ctgggtggtctgatcgtgatcgactttatcgatatgaccccggtacgccaccagcgcgag
gtcgaaaaccgcctgcgtgacgccgtgcgtcaggatcgcgcccgtattcagatcggtcgg
atctcccgctttggcctgctggagatgtcccgccagcgcctcagcccctctctgggcgaa
tccagccaccacgtctgcccgcgctgtaatggcaccggtaccgtgcgtgacaacgaatcg
ctggcgctgtccatcctgcgtctgatcgaagaggaagcgctgaaggagaacacccgtgaa
gtgcacgccatcgtgccggtaccggtcgcctcttatctgctgaacgagaagcgtgacgcc
gtaagcgccattgaaaaacgccagccggacgtgcgcgtcatcgtggtgcctaacgagcaa
atgcagaccccgcactacgccgttatgcgggttcgtaaaggcgaagagacccataccctg
agctacaagctgccacagctgcacgaagcggaagcctgcggtgaggaagaagtaccggca
gagcgcaagcgtccggagcaaccggcgctggccgcctttagcctggatgtggccgcaccg
ccgatcgacgccgcgcaggataagcctgtcgctgtcgacgtcgcgccgaccgaacgcccg
cagccggtcgccgacgcccgtccgggtctgtttggtcgcctggtggcctccctgaaaggg
atcttcgccggcgacgacgccccggcgccggtgcaggaagataaacctgccgccagcgca
gagcgtccgcgtgaagagagccgttcctcgcaggagcgccgcggtcgtcgccagaatccg
cgtcgtgaacgcggtgaacgcggcgatcgtccggagcgcggtgagcgtccggagcgcggt
gaacgtccagagcgcggtgaacgtccggagcgtgcgaaccgcgacggccgtgaaaaccgc
gacgaacagcgccgtggccgccgtcaggctcagccgacgccggtgacagagaacggcgta
gaagagaatgcccagcagcgcgaagagcagcagcagcgcgaagagcagcagcagcgccgc
gagcagcgcaacgagcgtcagcgccgtcgtcaggaagagaagcgccaggcccagcaagag
gtcaaggcactggactccgccgcacagcctgaggaagagatcgcagaggagagcgtaccg
gcccagcgccgtcaacgccgccagctgagccagaaaatccgcatcggcgagagcgcgtca
gccgttgtcagcgccgacgcagatgccgccgtggcaccggtcgccgacgcgaccgccgct
ccggctctgccggtggttagcgctcagcctcaggagagcgccgccgtcgccgcggaagag
gataacgcgccgcgccatgagaatggcatgccgcgtcgctcacgtcgctcaccgcgtcac
ctgcgcgtcagcgggcagcgccgtcgccgctatcgcgacgagcgttatccgcagcagtca
ccgatgccgctgacgctggcggtctactctccggagatggcctctggcaaggtgtggatc
agctatcctatcgccacccctgcggccgtcgagagcgtcgagcgcgaagcgccgcgcgcc
acggaggagagcgccaccgcggtagcggtagagaccctcgccgccgcaccggtggaagcc
gcacgtccgagcgtcaccgccgagaccgtcgtcaacgacgccgtggccgccgagccggtg
gtgcaggcgatcatcgccccggccgcagccgttgaggagccgacccgcgacgcgatcgcg
cagcagccggcgccggtagtcgcagaggagagcgccgcgcacgccgtctgtgccgccgcc
gcaccgacgctggaagaggcgctgcctgcattggcccaggccgaagcacaggctgccgaa
gccgaagccgaagccgaagccgaagccgaagccgaagccgaagccgaagccgaagccagc
gtagtcgacgcccaggtacagccgtcggcaatggccccgagcgatacgcacgaacacggt
cgcgctagcgcgccgatgactacggccccggcgccggcctacgttgcaccggtcacggta
gtcagcacctgggttcgcccggaatatgacttccacggccgcggtgccgccggtgcagac
gccgcgaccaatcaggccgcggcgccagccacgaaaccggtcatgccgcaggagtaa
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