Flammeovirgaceae bacterium 311: D770_13270
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Entry
D770_13270 CDS
T04058
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fbt
Flammeovirgaceae bacterium 311
Brite
KEGG Orthology (KO) [BR:
fbt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fbt03016
]
D770_13270
Enzymes [BR:
fbt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D770_13270
Transfer RNA biogenesis [BR:
fbt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D770_13270
Prokaryotic type
tRNA splicing ligases
D770_13270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AHM60908
UniProt:
A0A0D3LG79
LinkDB
All DBs
Position
complement(3163349..3164764)
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AA seq
471 aa
AA seq
DB search
MTNQKINGNDLMSIGYEGKAIGEALQILQTAYKGKTKQHLLELLKRVLETPALYREHAVL
APLAEVLLIPKPAEPRPLKAADQAYTIYGAEGIEAGARNQMDIAMRLPITVAGALMPDAH
QGYGLPIGGVLATENAVIPYGVGVDIGCRMTMSLYDLPAHFLEKRRDPLKKMLVDNTRFG
RATFEKPKEHAVIDRPEFKEVPIMKSLKDRAFQQLGSSGGGNHFVEWGTVELHDVDNEWG
LTPGTYLALLSHSGSRGLGATIAGHYTKLAMETCKLPQEARHLAWLDLDTEAGQEYWLAM
NLAGDYASACHHQIHDRLAKAIVHDPLARIENHHNFAWKEKDAAGREIIVHRKGATPAGA
GVLGIIPGSMTAPGFIVRGKGKAESINSASHGAGRTMSRTQAKATLNPEAVQQQLAQAGV
DLIGSGLDEAPGAYKDIRKVMEYQQDLVEVVGTFSPKIVRMCGDEKFMEVD
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaccagaaaataaacggaaacgacctaatgtccattggctacgaaggcaaagcc
atcggcgaagccctgcagatcctgcagaccgcttataaaggaaaaacaaagcagcatctg
ctggagctcctgaaacgggtccttgaaacccctgccctgtacagggaacatgccgtgctg
gcacctcttgccgaagtgttgctgattcccaagcctgcagaaccccggccactgaaagca
gcagatcaggcctacaccatttatggcgctgaaggcatagaagcaggtgcccgtaaccag
atggatattgccatgcgcctgcccattaccgtagccggtgctcttatgcccgatgctcac
cagggctacggccttccgattggaggtgtgctggccactgaaaatgcggtgattccgtat
ggtgtaggcgtagacattggctgccgcatgaccatgagcctctatgacctgcctgcgcac
ttcctggagaagcggcgcgatccattaaaaaagatgctggtagacaacacccgcttcggc
cgcgctaccttcgagaagccaaaggagcatgccgtgattgaccggccggagtttaaggag
gtcccgatcatgaaaagcctgaaggaccgtgccttccagcagctgggctcctccggcggg
ggcaaccattttgttgaatggggaacggtggaactgcacgatgtagataatgagtggggc
ttaacgcctggtacttacctggccctgctttcccactccggctcgcgcggactgggcgct
accatagccggccactacaccaagctggccatggaaacttgcaaactgccccaggaggcc
cgtcacctggcctggctggatctggatactgaagccggacaggagtactggctggccatg
aacctggcaggcgattatgcctctgcctgccaccaccagatccatgatcgtttggcaaag
gccatcgttcacgaccccctggcccgcattgaaaaccaccacaactttgcctggaaagaa
aaagatgctgcaggaagggagattattgtacaccgcaaaggcgccaccccggctggtgca
ggcgtactcggcatcattcccggctccatgaccgcccctggctttattgttcgtggaaaa
gggaaagccgaatccatcaactccgcctcccacggggccggacgtaccatgtcgcgcacc
caggccaaagcaacccttaacccggaagcggtgcaacaacaactggcgcaagccggtgta
gatctcatcggctccggcctcgacgaagcaccaggcgcttacaaggacatccgcaaggtg
atggagtaccagcaggatctggtagaggtggtggggaccttttcgccgaagattgtgagg
atgtgcggggatgagaagtttatggaggtggattga
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