Granulibacter bethesdensis NIH3.1: GbCGDNIH3_0283
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Entry
GbCGDNIH3_0283 CDS
T03155
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gbc
Granulibacter bethesdensis NIH3.1
Pathway
gbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GbCGDNIH3_0283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbc03019
]
GbCGDNIH3_0283
03009 Ribosome biogenesis [BR:
gbc03009
]
GbCGDNIH3_0283
Enzymes [BR:
gbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GbCGDNIH3_0283
Messenger RNA biogenesis [BR:
gbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GbCGDNIH3_0283
Ribosome biogenesis [BR:
gbc03009
]
Prokaryotic type
rRNA processing factors
GbCGDNIH3_0283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RseA_C
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AHJ62042
LinkDB
All DBs
Position
329650..332511
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AA seq
953 aa
AA seq
DB search
MSCHAPQALARIRLRLCVPFATIHRHNVMPGGARRSRISRVCTGAHYSMTKKMLIDASHA
EETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVEYGGNRHGFLAFS
EIHPDYYQIPVADRQRLLAMQEEEAREEEEAEEAEFSAAEARRSASRPLNNAREVIQTDS
EQPEASDPQEDGADHGEQDESAADFSGEAGDEGSVPASAGEGDDQEESRQASRPARQKED
RERRSPRFLRNYKIQEVIKRRQILLIQVVKEERGNKGAALSTYISLAGRYCVLMPNSPRG
GGVSRKITSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRDCEYLLRLWDDIR
DITLRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDIMRMLMPSHARKV
ICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEALVAIDVNSGRSTK
ERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKEALKNDR
ARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGASVHVLRAIEEEG
ARRRYAEIMVHAAADVAFYILNNRRDFLATLESRFGMKVLFSADTQFSGSQLRIEKIRAR
AMEDVVRTPLIGVADPQPSIAGDLYDFADASDGFATFEAAPVAAPVAALPAAVQAEPVGT
AEEGNHGGRLPSAEGDSEPGPDDGERRRRRRRRRRGNRRNDGAENGMDARSEQDENGNPT
EEDEPVRHGAANTPELPAEIEDLPGAGIASEETSAETQGDAIDGKQTVFGELGDEFAEDS
RPRRRGRRGGRGRRQPAQANGHDAGEVAYTGPTPADPFGQQPLDVFDVMDGIEQPMIRDG
KVGQGSRSERHPDPVPEPVVVSEEQAEPYIAPPIQPVVIEDTAPRARRGWWKR
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatgccatgcgcctcaggcgctggcccggatacggttgcggctgtgcgtgcccttc
gcgacgatacaccgacacaacgtcatgcccggtggagcgcgccgttcgcgcatatcccgg
gtgtgtaccggagctcattattcaatgaccaaaaaaatgctcatcgacgccagccatgcg
gaagaaacccgcgtggtggtgatggatggaaaccggcttgaagatttcgacgttgaggca
gcgtcccgtaaacagatcaaagggaatatttatctcgccaaagtcgtccgggtagagccg
agccttcaggccgctttcgtcgaatatggcggcaaccggcatggctttctggctttcagt
gaaatccatcccgactactatcagatccctgttgccgaccgtcagcgcctgctcgccatg
caggaagaggaagcacgtgaggaggaggaggctgaggaagccgaattttccgccgctgag
gcgcgtcgttccgcctcccgaccgttgaacaacgctcgggaggtcatccagacggattca
gaacagcccgaagcatccgatccgcaagaggacggggccgatcatggggagcaggatgaa
tccgccgccgatttttctggagaggccggggatgaggggagcgttcctgcctccgccggg
gaaggcgatgatcaggaggagagccgtcaggcctcgcgcccggcccgccagaaagaggat
cgtgagcgccgctccccccgttttctgcgcaattataaaattcaggaagtcatcaagcgc
cgccagattcttctgattcaggtggtgaaggaagagcggggcaataaaggggccgcgctg
agcacttatatttctcttgctggccgctattgcgtgttgatgccgaactcgccgcgtggt
ggtggcgtgtcacgcaagattacctccgccacggatcgccgccgtctgaaagacattatc
ggcgcgctggagatcccgcgcggcatgggcatcatcgtccgcacggctggcgggaaccgc
ccgaaggcggagatcatgcgggactgcgaatacctgttgcgcctgtgggatgatatccgt
gatatcaccctgcgttcatccgcgcccgcgctgattcacgaggaagccagtctgatcaag
cgggcgatccgtgatgtctataccagtacgattgaggaagtgctggtcgatggggaagaa
ggttggcgggctgcgcgcgatatcatgcgcatgctgatgccgtcccatgcccgcaaggtg
atctgctggaacgctgacaaggaacgtgccggacagcccctgttcgctcattatcaggtc
gaatcgcaacttgatgccattctggcgccgaatgtttcgctgaaatccgggggctatctg
gtgatcaaccaggccgaggctctggtggcgatcgacgtcaattccggccgttccacgaag
gagcggggaattgaggaaacagccctccgcaccaatctggaagcggcggatgaggtcgcc
cgtcaactgcgcctgcgtgaccttgccggtctgatcgtgatcgatttcatcgacatggaa
agccgcaagcataacggcatggtcgagcggcggctgaaggaagcgttgaagaacgaccgt
gcccgcattcaggtcggccagatcagcagctttggcctgctggaaatgagccgccagcgt
ctgcgcccgtccctgaccgaaaccagcatgatcacctgcccgcattgcaatgggcttgga
ctggttcgcaccactgagggtgcttccgtccatgtgctgcgggcgatcgaggaagagggc
gcacgccgtcgctatgccgagatcatggtgcacgccgctgccgatgtggcgttctacatt
ctgaacaatcgccgggattttctggccacgctggaatcccgcttcggcatgaaggtgctt
ttctctgctgatacgcagttcagtggttcccagttgcggattgagaaaatccgcgcccgt
gcgatggaagacgtggtccggactccgctgatcggcgttgctgatccgcagccgagcatt
gcgggtgatctgtatgatttcgctgatgcctctgacggttttgcgacgttcgaggcggcc
ccggtggcggcaccggtggcggcattgcccgcggctgtgcaggcagaaccggttggaacc
gccgaggaaggtaaccacggtggcaggctgccttccgcggaaggcgattctgaacccggg
ccggatgatggagagcgccgccgtcgccgtcgtcgtcgtcgtcgtggcaatcgccgtaat
gacggggccgagaatgggatggatgcccggtccgagcaggatgagaacggaaatccgacc
gaggaggacgaacctgttagacacggcgctgccaatacccctgagttaccagcggaaatc
gaagatctgccgggagccggaattgcttccgaggaaaccagtgcggaaacacagggcgat
gccatcgatggtaagcagactgtcttcggtgagcttggtgatgagtttgcggaggattcc
cgtccgcgccgccgtggccgccgtggcgggcgtgggcggcgtcagcctgctcaggcgaat
ggccatgatgcgggggaagtggcctataccggtcccaccccggctgatccgttcggtcag
cagccgctggatgtattcgacgtgatggatggtattgagcaaccgatgatccgtgacggg
aaagtgggtcagggctcccgctccgaacgccatcctgacccggtgcctgagccggttgtc
gtgtctgaggaacaggctgagccctatattgcgccccccatccagccagtggtgattgag
gataccgctccacgggccagacgaggctggtggaaacgctga
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