Geomonas oryzisoli: KP004_02795
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Entry
KP004_02795 CDS
T07282
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ger
Geomonas oryzisoli
Pathway
ger03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP004_02795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ger03019
]
KP004_02795
03009 Ribosome biogenesis [BR:
ger03009
]
KP004_02795
Enzymes [BR:
ger01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KP004_02795
Messenger RNA biogenesis [BR:
ger03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KP004_02795
Ribosome biogenesis [BR:
ger03009
]
Prokaryotic type
rRNA processing factors
KP004_02795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QWV94135
LinkDB
All DBs
Position
636672..639515
Genome browser
AA seq
947 aa
AA seq
DB search
MSKKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEPGLQAAFVD
IGLKKLGFLQMGELHPENWKWRDDIPEEQRHRRPRIQEVLRRGQELIVQVEKGERDNKGS
ALTTYISLPGRYMVLMPGSDSAGISRKVEAEGERKKLKEIIAEMTIPQGYGYIIRTEAMG
RTRDELQKDLDNLIALYEGIRERGTGMKGAGMAYQESALIIRTIRDYFSADIDEVLVDSK
DVFKDVRDALKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEP
TEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKH
NAEVEKTLKNALKADKARVNVARISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKS
VEAMALSFLRKVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYDIEVTVKGK
PSYLLNQMELELIKREKLPQEELPQEKTLQGKAPVKEEHPAAEPADGRKKKKKGKKAQEP
EAALHAEAALHAEAVPVALIEEPTGAEHVLTLEAEPEEHKKKRRRKRKRGKGGAAEGGAE
HAATSGEAMVEAPEGAPAEIPEPGAVVEPAAAQGAEQAHHEAGEEVKKKRRRKRRRGKGG
HEALPGGEQKPGENQPGVSEASAAAAPVEAVPVAEAAAPAGEVSEKKPARKRRGRGKGAA
AEGALEAVVAGVAVMSAPAEAPALATPQANEPAPAAAAKPEKKTRAPRKAKVAAESAAPA
ATPAAEAAASQEKPAQAKKGSRAKGAATEAPTAAPAAAAAEAPAAKPKAAKGAGRPKQAR
EAAEPKEAPAPKQASEPKAAKESAEPKKAKATKEPKQAKEPKQGKAAKAPKESGAGAPAA
ETKPAEAAPAKEKAPAKRAKKTAEPAAAEEKPKKPRAPRKKKEESPA
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaagatgcttatcaatgcgctgcacgctgaagaggcgcgagtggcgatcgtc
gaggacggacgcctggtggacctggatgtcgagatcgccggcaacgaacagacgcgcggc
aatatctacaagggggtggtggtccgcgtcgagccgggactgcaggccgccttcgtggac
atcggcctgaaaaagctgggctttttgcagatgggcgagctgcacccggagaactggaaa
tggcgtgacgacatccccgaggagcagcgccaccgccgtccgcgcatccaggaggtgctg
agaagggggcaggagttgattgtccaggtggagaagggggagcgcgacaacaagggctcg
gctctcaccacctacatctcgctgccggggcgctacatggtgctgatgccgggcagcgac
tccgccggcatctcccgcaaggtcgaggccgagggggagcgcaagaaactcaaggaaatc
atcgccgagatgaccatcccgcaagggtacggctacatcatccgcacagaggccatgggg
cgcacccgtgacgagttgcaaaaggacctggacaacctgatcgccctgtacgaggggatc
agggagagagggaccgggatgaagggggccggcatggcctaccaggagtccgcgctgatc
atccggaccatccgcgactacttctccgccgacatcgacgaggtcctggtcgacagcaag
gacgtgttcaaggacgtgcgcgacgcattgaaggagatcgaccccgccttcgagaagctg
gtcaagatgcaccaggagaagcgtcccatcttctcccgttaccagttggaggagcagatc
gacctgatctacgagaagaaggtgccgctcaagtcggggggctccatcttcatcgagccg
accgaggcgctggtctccatcgacgtcaactccggcaagtccaccggcgagaagggggtc
gaggacaccgcgttcaagaccaaccttgaggccgccgaggaggcggcacgccagttgcgg
ctgcgcgacctgggggggctcatcgtcatcgacttcatcgacatgcgtgaccgcaagcac
aacgcggaggtggagaagaccctgaagaacgcgctcaaggcggacaaggccagggtgaac
gtggcgcgcatctccgagttcggactcctggagatgtcccgccagcgcatccgccagacc
ctgaaccaggccagcaccctcgagtgtccccactgcgacggcaggggaaaggtgaaatcg
gtcgaggcgatggcgctctccttcctgaggaaggtgcacgcggccgccgccaaggggacc
atcggcgaggtggtggggagcctgccgctggaagtcgcctactacctgctgaaccgcaag
cgtcacgaactctcccagatcgagaacgactacgacatcgaggtgacggtgaaggggaaa
ccctcttacctgctgaaccagatggagctcgagctgatcaagcgggagaagctgccgcag
gaggagctgccgcaggaaaaaacgctccaggggaaggccccggtcaaggaggagcacccc
gcagccgagcccgccgacggtcgcaagaaaaagaagaaagggaagaaggcccaggaaccg
gaggctgcgctgcacgccgaggccgcgctgcacgccgaggcggtgcccgttgcgctcatc
gaggagcctaccggcgcggagcacgtgctgacgctggaggccgagccggaagaacacaag
aagaagcgtcgcagaaagcgcaagcgcggcaagggtggggctgccgaggggggcgccgag
catgcggccacctccggcgaggcgatggtcgaggctcccgaaggagcccccgcagagatt
cccgagccgggggcggtggtggagccggccgcggcgcaaggcgccgagcaggcgcaccat
gaagcgggtgaagaggtgaagaagaaacgccgtcgcaagagacggcgcggcaagggtggc
cacgaagctctcccgggcggcgaacagaagccgggcgaaaaccagccgggcgtcagcgag
gcttcggcagccgccgctccggtggaggccgtgcccgtcgccgaggccgctgctcctgcc
ggagaggtgagcgagaagaagccggcgcgcaagagaaggggccggggcaagggggcggca
gctgagggcgctctcgaggccgtggtcgccggcgtggcggtcatgagcgcaccggcagag
gcacctgccctggcgaccccgcaggcgaacgaacccgcgccggccgcagccgccaagcct
gagaagaaaacccgcgcccctcgcaaggcgaaggtcgctgccgagtccgccgcgcctgcg
gcgacgcctgctgccgaggctgccgcatcgcaggaaaagccggcgcaggcgaaaaagggg
agcagagccaagggcgcagcaaccgaggcgccgacagcggctcctgccgcggcagcagcc
gaagcaccggctgcgaagcccaaggctgccaagggtgccggaaggcccaagcaagcccgg
gaagctgccgagcccaaggaagcgccggcaccgaaacaggcgagcgagcccaaagcggcc
aaggagtctgcggagcctaaaaaagccaaggcgaccaaagagccgaagcaggccaaagag
ccgaagcaggggaaggccgccaaggcgcccaaggagtccggtgccggtgcccccgctgcc
gagaccaagccggcggaagcggctccggccaaggagaaggctcccgccaagcgcgcgaag
aagacggctgagcctgccgccgctgaggaaaagcccaagaaaccgcgggcgccgcgcaag
aagaaggaagaaagccctgcctga
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