Halomonas campaniensis: FF32_17305
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Entry
FF32_17305 CDS
T03198
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hcs
Halomonas campaniensis
Pathway
hcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FF32_17305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcs03019
]
FF32_17305
03009 Ribosome biogenesis [BR:
hcs03009
]
FF32_17305
Enzymes [BR:
hcs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FF32_17305
Messenger RNA biogenesis [BR:
hcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FF32_17305
Ribosome biogenesis [BR:
hcs03009
]
Prokaryotic type
rRNA processing factors
FF32_17305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIA76530
LinkDB
All DBs
Position
3715032..3718523
Genome browser
AA seq
1163 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITTEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPNPEMDTPHY
DVQRLRDDHLDDDESLTLSSFELSTDTEVGKEPDPSFTPPAMRAEAAVKSVVHNAPAPAS
LQTEERAERAAKADKAVTATPPSTEEQPSVIGRFIRGFAKLLGGEDTSTSQPEPEAPVAR
KQPERTSKNRSQRSESKPKPARERGESASRNEQRSQQQSSNQQPSNPQPSQPRNADNNDD
ANDKRSGPSRTRNRRRHPQQDDAKLQDNDQKSSRQKEQQTNLAAKESPKDEAAKPTAQPE
NRRDKPRDAKPKNEATRESASQTDDKQDDGKPKRTRNNPRNRTRKQAVNPQAEAEQLKLQ
AAAAEAPSADAPSAEAAVESPAVEAPAVEVNSSKAAPASPSLQDGASTTAAPTAEAVTEA
PEPAVEESAAADGTTAERPAEKAEKARKATRQRRQPQQAAEKAEPEAEERVEKSAEAKPQ
QPTDDATAAQEAPQEAASGSSEVVKADAGVELEEESSSNVKEFDTANSESVSSRGEETAK
ETDKPQQSASQAAESQELVRQEPVLSQEPQETAQETSADANTHAEAPKAAETAETAETAE
TAETADSDANTQTLSQSVAASIEASSPEFAEQPEAPSLDKDAVSNTPASDTTAASETVSK
AASETANNSAAAQEGTEQPTLATNEEVQTPSPEAPVETVAPEEAKQAPAASTQDEAPKPR
RRRRRAHNDPRELRKQAQNTTNE
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgcaacccagccagaagagctgcgggttgcgctggtagac
gggcaacgcctttacgatttagacatcgaatctggcgctcgagaacagaagaaagccaat
atttaccggggtaaaatcacccgggtagaaccttcccttgaagccgcttttgttgatttt
ggcgccgaacgccacggtttcctgccactaaaagaaatttcccgcgaatattttatcaaa
gatgtgtctggtcgccccagcatcaaagaggtgctgaaagagggccaggaagtcatcgtc
caagttgataaagaagagcgtggcaataaaggggcagcactgactacctttatcagctta
gcgggccgttttctcgttctgatgccgaacaatccccgtgcaggcggcatttcacgccgc
attgaaggtgatgaccgcagccagttgaaagatgccatgggccaactgacagtgccagac
aaaatgggcctgatcgttcgcaccgccggtatcggccgtagcccagaagagctgcagtgg
gacttggattacctcgtccaagtgtgggagtccattaccactgaagctggcaagcgctca
gccccattcctgatttaccgcgagtctaatgtcattatccgcgccatgcgcgattatcta
cgccaagacattggcgaggtgttaattgacagccccgagattcatgcagaagcactgggc
tttattcgtcaggtaatgccctcttaccagcagaaaattaaactctacgccgatgaagtt
ccgcttttctcgcgtttccaaattgagtcgcaaatcgaaactgcttaccagcgcgaagta
aaacttccttctgggggctccattgttatcgatcacaccgaagcgctggtctctattgat
atcaactctgcccgggctacacgtggcagcgatattgaagaaaccgcgctgcaaaccaac
tctgaagcagccgatgagattgctcgacagttgcgcctgcgtgatatcggtggcctcgtc
gttatcgactttatcgatatgggccctgcgcgcaatcagcgcgaggttgaaaatcgcatg
cgcgatgccctgaagctggatcgtgctcgcgttcagattggtcggatttctcgctttggc
ttaatggaaatgtcacgtcagcggctgcgcccctcgctaggcgaaaccagcggtgttgtt
tgtccgcgctgtaacggccaaggcactattcgcgatgttcgctcgctttcgctctctatc
atgcgcctgattgaagaagaagctatgaaagagcgcagcgcacaaatccgcgccattctt
ccagtacctgtcgcgacctacctactgaatgaaaagcgcagcgttctagcagacatcgaa
tcacgtcaaggcgtacgcgtagttctactgccgaatcccgaaatggatacgccgcattac
gacgttcagcgactacgtgatgaccacctagacgatgatgaaagcctgacgctatccagc
ttcgagctttcgactgatactgaagtaggtaaagaacccgatcctagcttcactccgccc
gccatgcgtgctgaagcagcggttaaaagcgttgtacataacgcaccagcgcccgcctct
cttcagactgaagagagggcagagagagctgccaaagcagataaagccgttacagcgact
cccccctccactgaagagcaacccagtgtgattggccgctttatcagaggcttcgccaaa
ctgctaggcggtgaagataccagcacgagccagcctgaaccggaagctcctgttgcccgc
aagcagcctgaaagaacgagcaaaaatcgctcacagcgcagcgaaagcaagccaaagcct
gcccgtgaacgtggcgaaagtgccagcagaaacgagcagcgcagtcagcagcaatcgagc
aatcaacagccgagtaacccgcagcctagccaaccgcgcaacgctgataataacgacgac
gctaacgataaacgtagcggtcctagtcgtactcgcaaccgtcgacgccaccctcagcaa
gacgatgccaagctccaggacaatgatcaaaagagcagtcgtcaaaaagagcagcagaca
aacctagcggctaaagagtcacctaaagatgaggcggctaaacctactgctcaaccagaa
aatcgtcgcgacaaaccacgtgatgccaagcctaaaaacgaagctacccgtgagtctgca
tcacaaacggacgacaaacaggatgacggcaagccgaaacgcacgcgtaacaatccgcgc
aaccgcacgcgtaaacaggccgttaatcctcaagccgaagcggaacagctgaaactgcaa
gccgcagcggctgaagctccctctgcagacgctccttctgctgaggctgctgttgaatca
cctgctgttgaagcgcctgctgttgaagtgaacagcagtaaagcagcgccggccagcccc
tctttacaagatggggccagtacaacagctgcaccaactgccgaagcagtgactgaagcg
cctgaaccagctgtagaggaatcagcagctgccgatggaacaacggctgagcgccctgcc
gaaaaggcggagaaagcacgcaaggctacgcgccagcgtcgccaacctcagcaagcggca
gagaaagcggaacctgaagcagaggaacgtgtagagaaaagcgctgaggccaaacctcaa
cagccaactgatgacgcaactgctgctcaagaagcgccccaagaggcggctagcggttcg
tctgaggttgtgaaagctgatgcgggagtagagctggaggaagagagtagttcaaacgtg
aaagagtttgataccgccaacagcgaatcagtaagctcacgtggcgaagaaactgcaaaa
gagactgacaagccccagcagtcggcatctcaagctgctgagtctcaagaacttgtgcgt
caggaacctgtattgtctcaagaaccgcaggagacggcacaagagacatccgcagacgcc
aacacacatgcagaagcgccgaaagctgctgagactgctgagactgctgagactgctgag
actgctgagactgctgacagtgacgctaacactcagacactctcgcaaagcgtagcagct
agcattgaagcaagctcaccagagtttgctgaacagccggaagcaccttctttagacaag
gacgcagtgagtaacacacctgcttcagacacgacagctgcgtcagaaactgtttcaaaa
gccgcttcagaaaccgcgaataacagcgctgctgctcaagaaggcacagagcagcctaca
ttggcgactaatgaagaggttcaaacgccctcaccagaggcccccgttgaaacagtggca
cctgaagaagcaaagcaagcgcctgctgcttctacccaagacgaggcacctaagccacgt
cgccgccgtcgtcgcgctcataacgatcctcgtgaactgcgcaaacaagcacagaacacg
actaatgagtga
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integrated database retrieval system