Hyphomicrobium nitrativorans: W911_05210
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Entry
W911_05210 CDS
T02943
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W911_05210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hni03019
]
W911_05210
03009 Ribosome biogenesis [BR:
hni03009
]
W911_05210
Enzymes [BR:
hni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
W911_05210
Messenger RNA biogenesis [BR:
hni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
W911_05210
Ribosome biogenesis [BR:
hni03009
]
Prokaryotic type
rRNA processing factors
W911_05210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AHB47915
UniProt:
V5SCY3
LinkDB
All DBs
Position
1094675..1097797
Genome browser
AA seq
1040 aa
AA seq
DB search
MAPNKMLIDATHPEETRVVVLRNGRVEEFDYESAARKLLRGNIYLAKVTRVEPSLQAAFV
DYGGNRHGFLAFNEIHPDYYQIPMADRQALIEEEALAEAEEEAAADARAERLARRRRSGG
RGRSASGSDEDAAQRDDAGGAADGEDSDDDEEGARVVMIEDVGDDEDDLDADDDEHHDDE
PHDDGDEDERGPQTIAQATQRDDVLTEEVSDAEAPQGGNGGDQDAAAPEAVSGEAAVVEA
AAEADAARDTSNGGDHDEAGGVQEVASVAVEAEAVESVGSEDALEELPSRPRRRPRSYKI
QEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYTVLMPNTARGGGISRKITQPQDRK
RLKAIAQELEVPEGMGLIIRTAGAARTKQEIKRDFEYLLRLWESVRDLTLESTAPSLVYE
EGNLIKRSIRDLYNKDVDEIVVAGDHAHKDAKDFMRMLMPSHAKNVLAHQDAEPLFTKYG
IERQLNAMFSPYVTLKSGGYLVINQTEALVAIDVNSGKATREFSIEETALNTNLEASDEI
ARQLKLRDLAGLIVIDFIDMEEKRNNRAVERRLKDALRFDRARIQLGRISHFGLMEMSRQ
RLRSGVLEGSTSQCPHCQGTGIIRSTESVALAVLRGLEDALMAGARTSLVATTTSAVALY
ILNNKRHFINEMETRHGIFVTVQASDKLQGANFVIEKGQTAPVASRRPDRAAVNMDWGFE
GETFEADADAGDGEAEQPRAAREEGGREGGRRRRRRRGRRDGGRSEMRGGRDEAELGYDD
QDDEHVGGEDAGPVEVVDDDDDGYADDAPAPREARSEGSEEGGNGRRRRRGRRGGRRGRD
RARGANGSADAHEATDNADAADSVAPGNGSDAQAGDQGADTFQPEALQVDGEVAVDDVVA
AEVVTEDAAERSEPRRSSPRRRSSEAKAAEADAADAPEAAPSSEAEAATDAEEAPAPTRS
RRSAGAAQAEKAESVAAVPEETAPPAVEDSVVARVRARSEASSEPKLERVVVSSGEASAA
EISAEESPVRRGWWQRRLGS
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcacctaacaagatgcttatcgatgccacccacccggaagaaactcgggtggtggtg
ttgcgcaacggacgtgtagaggaattcgattacgagagcgcggcgcgcaagctccttcgc
ggcaatatctatctggccaaggttacgcgcgtagagccttcgctgcaggcggctttcgtc
gactacggcggaaatcgccacggcttcctcgcctttaacgaaatccatcccgactattac
cagatcccgatggccgaccggcaggcgctcatcgaggaggaggcgcttgccgaagccgag
gaggaagctgctgccgatgcccgggcggaaaggctcgctcgccgccggcgttctggcggc
aggggccgttcggcgtccggatcggacgaggatgctgcacagcgtgacgatgcgggcgga
gccgctgacggagaggattccgacgacgacgaagagggcgctcgggttgtcatgatcgag
gatgtcggcgacgacgaagacgacctcgacgctgacgacgacgagcaccatgacgacgaa
cctcacgacgacggtgacgaagacgagcgcgggccgcagacgattgcccaggccacgcag
cgcgacgacgtgctgacggaggaggtttcggacgccgaggcgccgcagggcggcaacggc
ggcgaccaggacgctgcagcgcctgaagccgtttccggcgaagcggctgttgtcgaggcg
gcagcggaggccgatgcggcccgagacacctcgaatggcggcgatcacgacgaggccggc
ggggtgcaagaggttgccagcgtggccgtggaggccgaggcggtcgaaagcgtcggctcc
gaggacgctctcgaagaactgccctcgcgtccgcgccgcaggccgcgcagctataagatc
caggaagtcatcaagcgccgccaggtgatcctggtgcaggtggtcaaggaagagcgcggc
aacaagggtgcggcgcttaccacctacctgtcgcttgccggccgctacaccgttttgatg
ccgaacaccgcgcgcggcggcggcatcagccgcaagatcacccaaccgcaggataggaag
cgcctcaaggccatcgcgcaggagcttgaggttcctgagggtatgggcctgatcatccgc
acggcgggtgcagcgcgcaccaagcaggagatcaagcgcgacttcgaatatctgctgcgt
ttgtgggagagcgtgcgcgatctcacgctggaatccaccgcgccgagcctcgtctacgag
gaaggcaacctgatcaagcgttcgatccgcgatctttacaacaaggacgtggacgaaatc
gtcgttgccggcgaccatgcccacaaggacgccaaggacttcatgcgcatgctcatgccg
agccatgccaagaacgttctggctcatcaggacgccgagccgctgttcaccaaatacggc
atcgagcggcagctcaacgccatgttcagcccttacgtcacgctgaagagcgggggctat
ctcgtcatcaaccagacggaagcgctcgtcgccatcgacgtcaactccggcaaggcgacg
cgtgagttctccatcgaggaaaccgcgctcaacaccaacctcgaagcgtccgacgagatt
gcgcgccagctcaagctgcgcgatcttgcgggcctgatcgtgatcgacttcatcgacatg
gaggagaagcgcaacaaccgcgccgtcgaacggcggctgaaggatgcgctgcgtttcgat
cgcgcccggatccagctcggccgcatcagccatttcggccttatggagatgagccgccag
cgcttgcgctcgggcgttctcgaaggctccacgtctcagtgcccgcactgtcagggcacc
ggcatcattcgctcgaccgagagcgtggcgctggcggttctgcgcggactggaggatgcg
ctgatggcgggtgcgcgcacgtcgctcgtcgcaacgacgacgtcggcggtcgcactctat
atcctcaacaacaagcgtcatttcatcaacgagatggagacgcgccacgggatcttcgtc
acggtgcaggccagcgataagctgcagggcgccaatttcgtgatcgaaaagggacagact
gcgccggtcgcctcacgccgtccggaccgggctgccgtcaatatggattggggcttcgag
ggcgaaacgttcgaggccgacgcagatgccggagacggcgaagccgaacagccgcgcgcg
gctcgcgaagaaggtggacgcgagggtggacgccgtcgccgccggcggcgtggacgccgg
gacgggggccgttcggagatgcgcggcgggcgcgacgaggccgagctcggttatgacgac
caggacgacgagcacgtgggcggcgaggatgccgggccggtagaggtcgtcgacgacgac
gatgacggctacgcggacgatgcgccggcgccgcgcgaggcgcgtagcgaaggttcggaa
gagggtggtaacggacgccgccggcgccgcggacgtcgcggcgggcggaggggtcgcgat
cgggcgcggggtgcaaacgggagtgccgacgcgcacgaggcaacggacaatgcagacgcg
gcagacagtgtcgcgccggggaacggttcggacgctcaggccggggatcagggtgccgat
acctttcagcccgaagctctccaggttgatggcgaggttgcggtcgatgacgtcgtggct
gctgaggtcgtgacggaagacgccgccgagcgcagcgagccgcgtcgctcgtcgccgcgg
cgtcggtcgtccgaggccaaagctgcggaggccgatgctgccgatgcgcccgaggctgcg
ccaagcagcgaggccgaggcggcaacggacgccgaggaggcacccgctccgacaagatct
cgccgctcggcaggggctgctcaggccgaaaaggccgagagtgtcgctgcggtacccgag
gagaccgcgcctcctgcagtggaggactccgtggtggcgcgtgtgcgtgcccgaagcgag
gcatcgtccgagccgaagctcgaacgcgtcgtcgtttcgtccggcgaagcctctgctgcg
gagatcagtgcggaagaatcgccggtgcgccgtggctggtggcagcggcgtctcggaagc
tga
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