Ictalurus punctatus (channel catfish): 108273576
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Entry
108273576 CDS
T04658
Symbol
raraa
Name
(RefSeq) retinoic acid receptor alpha-A isoform X1
KO
K08527
retinoic acid receptor alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108273576 (raraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ipu03310
]
108273576 (raraa)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108273576 (raraa)
Nuclear receptors [BR:
ipu03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
108273576 (raraa)
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
108273576
NCBI-ProteinID:
XP_017338373
Ensembl:
ENSIPUG00000017734
UniProt:
A0A2D0S6J7
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All DBs
Position
13:1303141..1383085
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AA seq
439 aa
AA seq
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MSGKGFPVAHFSYFLPHVIGGLSPPSMPTMSVSGYSTPSPATVETQSTSSEEIVPSPPSP
PPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKSCIINKVTRN
RCQYCRLQKCLEVGMSKESVRNDRNKKKKEEKKVECVESGVLSADTELMIERVRKAHQDT
FPSLCQLGKYTTSNSSERRVSLDVDLWDKFSELSTKCIIKTVEFAKQLPGFTTLSIADQI
TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP
LEMDDAETGLLSAICLLCGDRQDLEEADKVDVLQEPLLEALKLYVRKRRPHKPHMFPKML
MKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLESTGGGASSRSNPAPSGS
CSPSPSPSSAHSSPSTQSP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggaagggcttccctgtggcccacttctcctacttcctccctcacgtgattggt
gggctctcgccaccctcaatgcctaccatgtctgtgagcggatacagcacgccctcccca
gccaccgtggagacgcagagcacgagctcggaggaaattgtccccagtccgccgtctcct
cctccgccaccgagagtctacaaaccctgcttcgtctgccaggacaaatcctccggctac
cactacggcgtcagtgcctgcgaaggctgcaaggggtttttccgcaggagcatccagaag
aacatggtgtacacgtgtcaccgggaaaagagctgcatcatcaacaaggtgacgcggaac
cgctgccagtactgccgcctgcagaagtgtctggaagtcggcatgtccaaggagtcggtg
cggaacgacaggaacaagaagaaaaaggaggagaagaaggtggagtgcgtggagagcggc
gtgttgagcgccgacacagagctgatgatcgagcgtgtgaggaaagcgcaccaggacact
ttcccctcgctctgtcagctcggcaaatacacaacgagtaacagttcagagcgacgtgtc
tcgctagacgtggatctgtgggataaattcagcgagctctccaccaagtgcatcatcaag
acggtggagttcgctaagcagcttcccggcttcaccacactctccatcgctgaccagatc
acgctgctcaaagccgcctgcctcgacatcctgattcttcgcatctgtacgcgctacaca
cctgagcaggacaccatgacgttctcggacggtttgacgctgaaccgcacgcagatgcac
aacgccggcttcgggccactcacggacctggtgttcgccttcgccaaccagctgctgccg
cttgagatggacgacgcagagacgggcctgctcagcgccatctgcctgctgtgtggggat
cgtcaggatctggaggaggccgataaggtggacgtgctgcaggagccgctgttggaggct
ctgaaactctatgtgaggaagaggaggccacacaaaccccacatgttccccaagatgctg
atgaagatcacagacctgcggagcatcagcgccaagggagcagagcgagtgatcacgctg
aagatggagatccctggctctatgcctcctctcatccaggagatgctggagaattcggag
gggttggagagcacggggggaggagccagctcacggtcaaaccccgccccctcgggcagc
tgtagtccctcgccctcgcccagctccgcccacagcagcccatccactcaatcgccctga
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