Jannaschia sp. CCS1: Jann_2539
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Entry
Jann_2539 CDS
T00330
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jan
Jannaschia sp. CCS1
Pathway
jan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Jann_2539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jan03019
]
Jann_2539
03009 Ribosome biogenesis [BR:
jan03009
]
Jann_2539
Enzymes [BR:
jan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Jann_2539
Messenger RNA biogenesis [BR:
jan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Jann_2539
Ribosome biogenesis [BR:
jan03009
]
Prokaryotic type
rRNA processing factors
Jann_2539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Trypan_PARP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABD55456
UniProt:
Q28PA6
LinkDB
All DBs
Position
complement(2540632..2543304)
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AA seq
890 aa
AA seq
DB search
MAKTMLIDATHAEETRVVVADGTKVDEFDFESLNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEERAYAEQQAREEEEESSKPKRRRKRRRG
GDTKAEETGNDAVAKGTPNGMDVVDLEAGEDAAASDDADVEGLSPMELVKETPVEEPEGD
ADTTDDADADTDADTDTDADTDDSGDDNSEVVADDDDVEEIRPVRKPRPKKYKIQEVVKV
RQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIA
TALDVPQGAGLIVRTAGSQRTKVEIKRDYEYLQRQWEQIRELTLKSIAPAPIYQEGDLIH
RTIRDLYNRDIGEVIVEGEAGYRHAKDFMKMIMPSHAKKVKRHGGGVPLFAKYKVESYLS
DMFNPTVQLKSGGYIVINITEALVAIDVNSGRSTKEGSIEDTATKTNLEAAEEVARQVRL
RDLAGLIVIDFIDMDERRNNNAVEKRIKDKLKTDRARIQVGRISTFGLMEMSRQRLRPGM
LEATTQACHHCHGTGLVRSDDSLALSILRQLEEEGTRGRAREVLLTAPVGIVNFLINFKR
DYLDAIEARSGMAIRIEADASLVVPDYKIEKFKTATRKITAVAPVVSMDAGLMDDIDEDA
GDDVVEDADQVDEAAEASEDEQPRKKRRRRRGGRGRRRTSDENGETGDSAEDGSAAAAVP
EEAAGADPSTDTPPEASPEGEEEQPKKRRRSRRGGRGRKSSEAQAETTDEGNGDAMEAQD
APAAEPAEPASVSTPEPEVAADAEPEITPEPTPDPEPEPQPERELVAADASVASEEPAQA
AEPTPEPEAAPEPTPEPVAAEATPEPVAAQAAAEPDAPAKPKRRGWWSRG
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaacaatgctcatcgatgccacccacgcggaagaaacccgcgttgtggtggca
gatggaaccaaggtcgatgaatttgactttgaatcgctaaataagcggcaactcgcagga
aacatatatctggccaaggtgacgcgggttgagccctcgttgcaggcggcctttgtggat
tacggtggcaatcgccacgggttcctcgcgttctcggaaattcaccccgattattatcag
atccccgtggccgaccgtgaagcgcttctggccgaagaacgcgcctatgcggaacagcag
gcccgggaggaggaggaggaatcctccaaacccaagcgccgtcgcaagcggcgtcgtggt
ggtgacaccaaggccgaggagactggcaatgacgccgtggccaaaggcacacccaacggc
atggatgtggtcgatctggaagcgggggaagacgcggccgcatccgatgacgcggatgtc
gaaggcctgtcgccgatggagctggtgaaagaaacgccggtggaagagcccgagggcgac
gccgacacgacggatgacgcggacgccgatacggatgctgacactgatacagatgcggat
acggacgacagcggcgacgacaattccgaggttgtggccgatgacgacgacgtggaggaa
atccgccccgtccgcaaaccacgcccgaagaagtacaagatccaggaggtcgttaaagtc
cgccagatcatgctggtgcaggtcgtcaaggaagagcggggcaacaagggggccgcgctg
acgacatatctgtccctggccgggcgctattgcgtgttgatgcccaacaccgcgcggggc
ggcgggatttcccgcaagatcaccaacgccgccgaccgcaagaagctgaaagacatcgcc
acggcgctggatgtgccccagggcgcgggcctgatcgtgcgcacggcaggcagccagcgc
accaaagtcgagatcaagcgcgattatgaatatctgcaacgccaatgggaacagatccgc
gagctgacgctgaaatccatcgcgcccgcaccgatctatcaggaaggcgacctgatccac
cgcaccatccgcgacctttataaccgcgatatcggcgaggttatcgtggagggcgaggcc
gggtaccgccacgccaaggacttcatgaagatgatcatgccgtcccacgccaagaaggtg
aaacggcacggcggcggggttccgcttttcgcgaaatacaaggtggaatcgtatctgtcg
gatatgttcaacccgaccgtgcagctgaaatccggcggctatatcgtcatcaacatcacc
gaggcgctggtggctatcgacgtgaactcgggccggtccaccaaggaaggcagcatcgag
gatacggcgacgaaaaccaacctggaggccgcggaggaagtggcgcgtcaagtgcggttg
cgtgaccttgccggtctgatcgtcatcgacttcatcgacatggatgaacgccgcaacaac
aacgccgtcgagaagcgcatcaaggacaagctgaagaccgaccgggcgcgcattcaggtg
ggccggatttcgaccttcggcctgatggaaatgtcccgccagcgcctgcgcccgggtatg
ttggaggccacgacgcaggcctgccaccattgccacggcacgggcctcgtgcgctcggat
gacagtcttgcgctgtcgatcctgcgccagttggaagaggaagggacacggggccgcgcc
cgcgaggttctgctgactgcgcccgtgggcatcgtcaatttcctgatcaacttcaaacgc
gactatctggacgcgattgaggcgcgctcgggcatggcgatccggatcgaggccgacgcg
agccttgtcgtgccggactacaagatcgagaagttcaagaccgccacccgcaagatcacc
gccgtggcccccgtcgtttccatggacgcgggcctgatggatgacatcgacgaagatgcc
ggtgatgacgtcgtcgaagacgcggatcaggtcgatgaggcggctgaagcgtctgaagac
gagcagccgaggaaaaagcgccgccgccgtcgtggtggccggggccgccgtcggacctcc
gatgagaatggagagaccggtgacagcgccgaggacggatcagccgctgcggctgtgccg
gaggaggcggctggagccgacccgtcaaccgatacaccgcccgaggccagcccggagggc
gaagaggagcagcccaaaaagcgccgccgctcgcgccggggtggccggggccgcaagtcg
tctgaggcgcaagccgagacgacggatgagggcaatggtgacgccatggaggctcaggat
gcgccagcggcagagccagcagagcctgcgtcggtgagcacgccggagcccgaggtcgcg
gctgacgctgagcctgagatcacgccggagccgaccccggaccctgagcccgagcctcag
cccgaacgggagttggttgccgccgatgcgtcggtcgcctcagaggaacctgcccaggcg
gccgagccaacgccggagcccgaggccgcccccgaaccaacccctgagcctgtcgcggca
gaggccacgcccgaacctgtcgcggcccaggcggcagcggaacctgacgccccggccaaa
ccgaaacggcgcggatggtggtcgcggggctga
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