Lacimicrobium alkaliphilum: AT746_08915
Help
Entry
AT746_08915 CDS
T04189
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lal
Lacimicrobium alkaliphilum
Pathway
lal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT746_08915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lal03019
]
AT746_08915
03009 Ribosome biogenesis [BR:
lal03009
]
AT746_08915
Enzymes [BR:
lal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AT746_08915
Messenger RNA biogenesis [BR:
lal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AT746_08915
Ribosome biogenesis [BR:
lal03009
]
Prokaryotic type
rRNA processing factors
AT746_08915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALS98364
UniProt:
A0A0U2ZJ77
LinkDB
All DBs
Position
complement(1961289..1964636)
Genome browser
AA seq
1115 aa
AA seq
DB search
MLINATQQEELRVALVDGQKMYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEIARTYFPKGYNFEGRPQIKDAIKEGQEVIVQIDKEERGQKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTELKQALNKLNLPDGMGLIVRTAGVGKSFEELEWD
LSVLLTHWKAITEASESRPAPFLIHQESNVIIRAIRDYLRRDIGEILIDDEKIFELAKQH
IELVRPDFSSRVKRYQGDVPLFSHYQIESQIESAFQRDVRLPSGGSIVIDQTEALTSIDI
NSSRSTKGGDIEETALNTNLEAADEIARQLRIRDLGGLFVIDFIDMGPVRHQREVEKRLT
DAVRPDRARVQLGRISRFGLLEMSRQRLRPSLGESAQHVCPRCDGHGTVRGTESLALSVL
RLMEEEAIKDNTGQIEAQVPVSVATYLLNEKRRSVADLEKRHKVSLLIIPNPNLETPHFR
VSRHRSDDQIQDVSYNVELDEVKTTDADRPTSSQPAREEPVLKTLIAPPKAPPAAKPAAA
AATTESKPQGPSLLARFGKWFGDLLKEEPAEVKTARDGNKDKDAQRNQRGSRTSNRRGEG
RRSKPQDGKPQSERQQERKPATRKPRRDSAENADTQKKQTRSQPKQEQATQAKQEQPVQA
KQEPTEGKDTQKQQLAERRKRRDKRRSVRVQDREEITNIEQNATETAEAAQGSSATEAKT
QSRKPAQPSQPETPEADQSAADNNADTESQVTTTDEKATDDKASDTGRNRSRRSPRHIRA
AGQKRRKDQADEQQADTQDKEVQDAAGQPEAEQAASESQPQPHKDVPPVDNTSAAVEAKS
AQAGKIVGADNTDKGEEAVQAEQPVKAQPEQAAEQTEARDDSSTAVAESKDSDADKAPAE
KPAVTESASKADAPATAEKAKQQDADKSESAEAEAPKAEKPKRAPRKPRRKTPEQVEIAL
EHTDDKAEEKVAAEPEQAAEAAEPVKTEKVSEQTDAPEQPEEVTKAQATADTAPEAEPEA
KPEPEVKAESESKAGAKADNTPAKVSSEKPVKKASFMSHPMAKPSSLSEEFSEISISAID
NEQRQALKKSGKTASQSSLSNQANAPAGKPSSLGQ
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaacgcaacccagcaagaagagttgcgtgttgccctggtagacgggcaaaaa
atgtatgacctggacattgaaagccccggtcatgagcaaaaaaagtctaacatctacaaa
ggcaaaatcacccgggttgaacccagcctggaagcggcttttgtcgattatggtgccgag
cggcacggcttccttcccttaaaagaaatcgcccgtacctatttccccaaaggctacaac
tttgaaggccgtccgcagataaaagacgccatcaaggaaggccaggaagtgatcgtacag
attgataaagaagagcgcggccagaaaggtgccgccctgaccacctttatcagcctggct
ggcagctacctggtattgatgcccaataatccacgggctggtggcatttcacgtcgtatc
gaaggcgacgaacgcactgaactgaaacaggcactgaataagcttaacctgcctgacggt
atgggactgatcgtacgtactgccggtgtcggtaaatccttcgaagaactggagtgggat
ttaagcgtactgctgacccactggaaagccatcaccgaggcttcagagtcgcgccctgcc
cctttcctgatccatcaggaaagcaacgtgattatccgtgctatccgtgactatctgcgc
cgtgatatcggtgagatcctgatcgatgatgagaaaatcttcgaactggccaaacaacat
attgaactggtacgcccggatttttccagtcgcgtaaaacgctatcagggtgatgtgccc
ctgttcagccactaccagattgaaagtcagattgaatcggcatttcagcgtgatgtacgc
ctgccctcaggcggctctatcgttattgaccagactgaagccctgacctcaattgacatc
aactcatcgcgttccactaaaggcggtgatatcgaagaaacggctctgaataccaatctc
gaagcggccgatgaaattgcccggcaattacgtattcgcgatctcggtggcctgtttgtt
atcgactttatcgacatgggtccggtacgccatcagcgtgaagttgaaaagcgcctgaca
gatgccgtacgtcccgacagagcacgggttcagttaggcagaatttcccgcttcggtttg
ctggaaatgtctcgtcaacgcctgcgtccatcactgggtgagtcggcccagcatgtgtgc
cctcgctgtgacggccatggcaccgtacgcggtaccgaatcactggcgctgtcagtactg
cgcctgatggaagaagaagccattaaagacaacaccgggcagattgaagcccaggtgccg
gtcagtgtggccacctacctgctgaatgaaaagcgtcgttctgtagccgacctggaaaaa
cgtcacaaggtcagcctgctgattattccgaatccgaatctggagacaccccatttcagg
gtatctcgtcacagaagcgatgatcagatacaggatgtcagctataacgttgagctggat
gaagttaaaaccactgatgccgatcgcccgaccagctctcagccagcccgtgaagagccg
gtgctgaaaaccctgattgctccgcctaaggcgccaccggccgccaaacccgccgctgcc
gcggccaccactgaaagtaaacctcagggcccctcattgctggcacgatttggcaaatgg
tttggcgacctgcttaaagaagagcccgccgaggtcaaaacagcccgcgacggcaacaaa
gataaagatgctcagcgcaatcagcgtggtagcagaaccagtaaccgtcgcggtgaaggt
cggcgtagcaagcctcaggatggcaagcctcagtctgagcgtcagcaggaacgcaagcca
gctacacgcaaaccgcgcagagacagtgctgagaatgccgatacacaaaagaaacaaaca
agatcgcaacccaagcaggaacaagccactcaggctaaacaggagcagccggttcaggct
aagcaggagccaaccgaaggcaaggatacgcagaagcagcaactggcagaacgtcgcaag
cgtcgcgataagagacgcagcgtaagggttcaggacagagaagagattaccaatatagag
cagaatgccactgaaacagcagaagccgctcagggcagctctgcaacagaggcaaaaaca
cagagcaggaaaccggctcaaccttcacagcctgaaacgcctgaggcggatcaaagtgct
gcggataataatgctgacacagaaagtcaggtaacgacgactgacgaaaaagccactgat
gataaagccagtgacacaggtcgcaatcgcagccgtcgctcgccccgtcatatccgcgca
gcgggtcagaaacgccgtaaagatcaggcggacgaacagcaggctgacactcaggataag
gaagttcaggacgctgccggacagcctgaggctgaacaagctgccagtgaaagtcagcca
cagccgcataaggatgtaccaccggttgataacacttcagcagcggtagaagcaaaaagt
gctcaggccggtaaaattgtaggggctgacaacaccgacaaaggtgaagaggctgtacaa
gccgaacaacctgtaaaagcacagccggagcaagcagctgaacaaactgaagccagggat
gatagcagtaccgctgtcgctgagagcaaagacagtgatgcagataaagccccggcagaa
aaacctgctgtgacagagtctgccagtaaggctgatgcacctgcaacggctgaaaaagcg
aaacagcaagacgctgataagtcagagtctgcagaagctgaagcgcctaaagctgaaaag
cccaagagagcgccccgcaagcctcgtcgtaagacgcctgagcaggtagagatcgcgctt
gaacacacagatgacaaggctgaagaaaaggtcgcggctgagccagagcaagccgctgaa
gcagcagagcctgtgaagactgaaaaagtatctgaacagacagatgctccggaacagcct
gaagaggttactaaagcgcaggcaactgcagacacggctccggaagctgaacctgaagcc
aaacctgagcctgaagtcaaagctgagtctgagagcaaagccggggcaaaagcagataac
acgcccgccaaggtgagctcagaaaagccggtgaaaaaagccagctttatgtctcacccc
atggccaagccctcgagtctgagcgaagagttcagcgagatctctatctcagcgatcgac
aatgaacagcgccaggcactgaaaaaatcgggtaaaactgccagccagtcgagtctgagc
aatcaggccaatgcgcctgccggcaagccctccagtctgggccagtaa
DBGET
integrated database retrieval system
