Lates calcarifer (barramundi perch): 108898567
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Entry
108898567 CDS
T04895
Name
(RefSeq) retinoic acid receptor alpha-B
KO
K08527
retinoic acid receptor alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108898567
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108898567
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108898567
Nuclear receptors [BR:
lcf03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
108898567
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
108898567
NCBI-ProteinID:
XP_018554007
UniProt:
A0A4W6CBR1
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Position
LG11:complement(20116717..20133419)
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AA seq
485 aa
AA seq
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MYESVDVVGLSPSPSRSSPSPGSFLGMDYYHRPPGLGPEKGLLSGAGGLQRHFGGSLVAG
RHWSGSCHSIETESTSSGEDLLVPSPPSPPPPPRIYKPCFVCQDKSSGYHYGVSACEGCK
GFFRRSIQKNMVYTCHRDKVCVINKVTRNRCQSCRLQKCLDVGMSKELVRNDRTKKKKEE
KRQGETEIYVLSADTEQMIEQVRQAHQDTFPSLCQLGKYTTNNSSEHRVSLDVSLWDKFS
ELSTKCIIKTVEFAKQLPGFTALTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDG
LTLNRTQMHNAGFGPLTDLVFSFANQLLPLEMDDAETGLLSAICLLCGDRQDLEEPEKVD
VLQEPMLEALKIYVRRRRPDKPCMFPKILMKITDLRSISVKGAERVITLKMEIPGSMPPL
IQEMLENSEGLEGHGAGGEKGGGKGRGGSREEDETDLRSCSSPKSVSSPSPSPIPCSPSS
PSPST
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaaagcgtggatgttgtgggtttgagtcccagtcccagccgcagcagccccagc
cccggctcttttctgggcatggactactatcacagacccccggggcttgggccagagaag
ggactactgtccggggcaggaggactccagcgtcacttcggagggtccctggtggccggc
aggcactggagcggatcctgccactctatagagactgagagcacgagctcaggggaggac
ctgctcgtacccagccccccttcacctccgcccccaccccgcatctacaagccctgcttt
gtatgtcaggacaaatcttcaggataccactatggagtcagcgcttgtgagggctgcaag
ggtttctttcggaggagcattcagaagaacatggtgtacacatgccaccgagacaaagtc
tgtgtcataaacaaggtgacaaggaaccggtgtcagtcctgtcgactgcagaaatgcctt
gatgttggcatgtcaaaggagttggtgcgaaatgacagaacgaagaagaagaaagaggag
aagcggcagggggagacagagatctatgttctgtcagcagacacagagcagatgattgaa
caagttcgccaggcccaccaggacacatttccctccctctgtcagctgggaaaatacact
acgaacaacagctcagagcaccgtgtctcactggatgtcagtctttgggacaagttcagt
gaattgtctaccaaatgtataattaagacagtggaatttgccaagcagctgcctggcttc
acagcactaaccatcgctgatcagatcaccctgctcaaagctgcctgccttgacatactg
attctgaggatctgcactcgttacaccccagaccaggacacaatgactttctctgacggt
ttgactctgaaccgcacccagatgcacaatgctgggtttggacctctcacagacctcgta
ttctcctttgcaaaccagctgctgccgctggagatggacgatgcagagacgggattactc
agcgccatctgcctgctctgtggagatcgtcaggatctggaagaaccagaaaaggtggac
gttcttcaggagccaatgttagaagccttgaagatctatgtgaggaggaggaggcctgat
aaaccctgtatgttccccaaaatactgatgaagattactgacctcaggagcatcagtgtg
aagggagcagagcgagtgatcacactgaaaatggagatacccggctccatgcctcctctc
atccaggagatgctggagaactctgagggtctggaggggcacggagcagggggagagaag
ggaggaggaaaaggcagaggaggaagcagagaagaggatgaaacagacctcaggagctgt
tcgtcgcccaaatcagtctcctctcccagcccaagccccataccttgctccccgtcttct
ccttccccctctacctga
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