Laribacter hongkongensis: LHK_01069
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Entry
LHK_01069 CDS
T00884
Name
(GenBank) Probable ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lhk
Laribacter hongkongensis
Pathway
lhk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHK_01069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhk03019
]
LHK_01069
03009 Ribosome biogenesis [BR:
lhk03009
]
LHK_01069
Enzymes [BR:
lhk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LHK_01069
Messenger RNA biogenesis [BR:
lhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LHK_01069
Ribosome biogenesis [BR:
lhk03009
]
Prokaryotic type
rRNA processing factors
LHK_01069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACO74061
UniProt:
C1D630
LinkDB
All DBs
Position
1032284..1035490
Genome browser
AA seq
1068 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDY
GTDRHGFLPFKEVSRTYFKNHEGGRPRIQDVLSEGQELIVQVEKDERGNKGAALTTYVSL
AGRYLVLMPNNPRGGGVSRRIEGEERNELRELMSQLQTPQGMSLIARTAGIGRSLEELQW
DLNYLMQLWTAVESAASAQTAPFLIFQEGSLVIRAIRDYFQPEIGEILVDTEEIWDQARQ
FMSHVMPGNVNRIKLYKDDVPLFSRFQIEHQIETAFSRQVALPSGGAIVIDHTEALVSID
VNSARATKGADIETTACNTNLEAADEIARQLRLRDLGGLVVIDFIDMENPKNQREVEQRL
KDALKADRARVQMGKLSRFGLLELSRQRLQPSLGETSHIPCPRCSGTGFIRGTESSALNI
LRILTEEAMKENTGAVHAQVPVDVATFLLNEKRADLFGIEARLKVGIVLIPNIHLETPHY
KIVRVRRDELLEQAEEFFAPSYTLVKEPEGDAVDTYLQDRSKPERPQAAVQGITPQQPAP
EARETRPVAAPVAARPGLLARVLGWLRGDSQPQAEAPAPAVQGSREARKPASGSRGGNRA
AAPAAAGDANQKRDRKQSRAKHEEQRRRQQDGETENGNGNGRRDRRDERSERNADRNGER
TERQENRDNRQPERSERSSERRERRPRDENRNQRMPAAEAATDVTAVPATPVVVADNAAA
PAPRERRRERRREPHAEQDVLNKELDNGTDGKPVTMGDLPPADEEHNDPAATAENGRERS
QRRRRGRRGGERRPEAAGAAVDSSDAEAAVPEAGMLPVAVEAAPVVPVAAEPERAVEAVA
GLQPVVAGRDAAETAASTVQLQDAPVGEPVVRIAEAAVAEPAQPVVTSPEPVRGESLVAE
SCQPVVEAVAPVVEPVEPASVVSAEKARPAADIAEPAIVSASTLVVQAAEAATEVVAPAV
VYDAASAGLVQVRTQQAVETDVPAADNAAANGLRRRDMLRQQATEQVPVPSLVRVETQNE
SAAVESSPAVGAAPQVRRRRDMLAQTAGSGASRSEAAGLAQVETRQHP
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctgtttaacgctacgcaggccgaagagctgcgcgtagccatcgtcgac
gggcagaagctcgtcgatctggacatcgaaaccgttggcaaggagcagcgcaagggcaac
atctacaagggtgtcatcacccggatcgagccatcgctggaagcctgtttcgtcgactac
ggaaccgaccgccacggctttctgccgttcaaggaagtttcgcgtacctacttcaagaac
cacgaaggcggtcgcccgcgtatccaggacgtgctgtccgaggggcaggagctcatcgtc
caggttgaaaaggacgagcgcgggaacaagggtgcagccctgaccacctacgtcagcctc
gccggccgttatctggtgctgatgcccaacaacccgcgtggtggtggcgtgtcgcgtcgc
atcgaaggcgaagagcgcaacgagttgcgcgagctgatgagccagttgcaaaccccgcaa
ggcatgagcctgattgcccgtaccgcgggtatcggccgttcgctggaagagctgcagtgg
gacctcaactacctgatgcagctgtggacggcagtcgaatccgctgccagcgcccagacc
gcgccgttcctgattttccaggaaggcagtctggtcatccgcgccatccgtgactatttc
cagccggaaatcggtgaaatcctcgtcgataccgaggaaatctgggaccaggcacgccag
ttcatgagccacgtgatgccgggcaacgtcaaccgcatcaagctctacaaggacgacgtc
ccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgccttctcgcgccaggtt
gccctgccgtcgggcggtgccatcgtgatcgaccacaccgaagcgctggtttcgatcgac
gtgaactcggcacgcgccaccaagggtgccgacatcgaaaccaccgcctgcaataccaac
ctggaggcggccgatgaaatcgcccgccagctgcgcctgcgtgacctgggcggcctggtg
gtgatcgatttcattgacatggaaaaccccaagaaccagcgtgaagtcgaacagcgcctc
aaggatgcactcaaggccgaccgtgcccgcgtgcagatgggcaagctgtcgcgcttcggc
ctgctggaactgtcgcgccagcgcctgcaaccgagccttggcgaaaccagccacattccg
tgcccgcgttgcagcggcaccggcttcatccgcggtaccgagtcgtcggccctgaacatc
ctgcgcatcctgaccgaagaggccatgaaggaaaacaccggcgccgtgcatgctcaggta
ccggtcgatgtcgccaccttcctgctcaacgaaaaacgcgccgacctcttcggcatcgag
gcccggctcaaggtcggcatcgtgctgatccccaacatccacctcgaaaccccgcactac
aagatcgtgcgcgtgcggcgtgacgagctgctggagcaggccgaagagttcttcgcaccg
agctacaccctggtcaaggaaccggaaggcgacgcggtcgacacctacctgcaggaccgc
agcaagccggaacgtccgcaggcggccgtgcagggcatcaccccgcagcagccggcgccg
gaagcccgcgaaacccggccggtcgccgcaccggtagctgcccgtccgggcctgctggcc
cgcgtgctgggctggttgcgtggcgacagccagccgcaggccgaagcgccggcacctgcc
gtgcaaggcagccgtgaagcgcgcaaaccggcttccggttcgcgtggtggcaaccgggct
gctgcaccggcagcagccggtgacgccaaccagaagcgtgaccgcaagcagtcgcgtgcc
aagcacgaagaacagcgtcgccgccagcaggatggcgaaaccgaaaatggcaacggcaac
ggccgtcgtgaccgtcgcgatgaacgctccgagcgcaatgccgaccggaacggcgagcgt
accgagcgccaggaaaaccgcgacaaccgtcagccggagcggagtgaacgcagcagcgag
cgccgtgaacgtcgcccgcgtgacgaaaaccgcaaccagcgcatgccggcggccgaagcc
gcaacggatgtaacggctgttccggccacgccggtcgtggtggctgacaatgctgccgca
ccggctccgcgcgaacgtcgccgtgagcgccgccgtgagccgcatgccgagcaggacgtg
ttgaacaaggagctggacaacggtacggacggcaagccggtcaccatgggtgatctgccg
ccagccgatgaggagcacaatgatccggctgccacggcagaaaacggacgcgagcgcagc
cagcgccgccgtcgcggtcgccgtggtggtgaacgtcgtccggaggcagccggagctgcc
gtggacagcagcgatgcagaggccgcagtaccggaggcaggcatgttgccggtcgccgtg
gaagctgcgccggtagtgccggttgccgcagaaccggaaagggccgtcgaggctgttgcc
ggactgcaaccggttgttgccgggagggatgccgcagaaacggccgccagtaccgtgcag
ctccaggatgctccggttggcgagccggttgtccggattgctgaagcagcagttgccgag
ccggcgcagcctgtggtgaccagtcctgaaccggttcgtggcgaaagcttggtggctgag
agctgccagccggtcgtggaagcagtcgctccggttgtcgagccggtggaacctgccagt
gtggtgtctgccgagaaggcccggcctgctgcggatatcgccgaaccggcaatcgtcagt
gccagtactctggttgtgcaggcggctgaggccgcgacggaagtcgtggcacctgcggtt
gtgtacgacgctgcttcggcagggctggttcaggtgcgtacccagcaggccgttgagact
gatgttccggctgcggacaatgctgctgccaatggcctgcgtcgccgcgacatgctgcgc
cagcaggccaccgaacaggttccggttccgtcgctggtccgggtggaaacccagaatgaa
tccgctgcggtcgagtcctctccggctgtcggggccgcaccgcaagtgcgccgccgccgg
gacatgctggcccagactgccggctccggagcatcccggagtgaggctgcgggtcttgcc
caggtggaaacgcgccagcatccgtaa
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