Mesorhizobium amorphae: A6B35_20170
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Entry
A6B35_20170 CDS
T04446
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mamo
Mesorhizobium amorphae
Pathway
mamo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6B35_20170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamo03019
]
A6B35_20170
03009 Ribosome biogenesis [BR:
mamo03009
]
A6B35_20170
Enzymes [BR:
mamo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A6B35_20170
Messenger RNA biogenesis [BR:
mamo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6B35_20170
Ribosome biogenesis [BR:
mamo03009
]
Prokaryotic type
rRNA processing factors
A6B35_20170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ANT52044
UniProt:
G6Y603
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All DBs
Position
4283616..4286546
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AA seq
976 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAQDEEDEDSEGEDRQNRDRGRRGR
RRGGKGRERGEHKRDAGAADSDDSGEHGDTGGDAIAEDTTAEADFTAENADASPETAGHE
DVAADHGEAEASEEVSGSGPTSIAASVEADVISEAAPQPESASADASGEASSSDNDRGML
EEVQSSHPDDHEVESVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNK
GAALTTYLSLAGRYSVLMPNTARGGGISRKITNAQDRKRLKEVVADLEVPQGMGVILRTA
GESRTKAEIKRDYEYLMRLWENVRNLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILV
SGEEGYREAKDFMRMLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYII
INQTEALVAIDVNSGRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEE
NRNNRSVEKRLKDHLKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGH
VRSDSSVALMVVRAIEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITI
EADDAVGAQHYAIFRGALAEKPEGFVEVRSLPTYVEPEEPEDEIVVEEEDETPAQVEQPR
HPQQQQPRSGEDGEGRDRKRRKRRRRRGGKDRDREHGDREHAAPAEGAIVAAPADIDAAV
ATDEITAEGGEAPVVAVAVDASDDGQGKKRRRGKRGGKRNRREDGEDGAEAGETADGVEA
DAAASEAVAIESVAETVAAVSAEELPSAANDDVPSAEKPKKKRASRSKKAAAEVAAETVA
EAPAEDAAPAEAATPAPVPAAPAAEEEAPASARPTRRKPVAIDAPVVPVVSSTVVEEAKV
EEKPKRAGWWQRKGFF
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaaaatgctgatagacgcctcccacccggaggaaacacgcgttgtcgtcgtt
cgcggtaaccgtattgaagaattcgactttgaatcacaggacaagaagcagctcaaagga
aacatctatctcgcccgcgtaacgcgcgtcgaaccctcccttcaggcagcctttgtcgaa
tatggcggcaaccgtcacggtttccttgccttcagtgaaatacaccccgactactaccag
atcccggtcgccgatcgtcaggccctgcttcgcgccgaagcgcaggaagcccaggacgaa
gaggacgaggacagtgaaggcgaggaccgccagaaccgcgatcgcggcaggcgcggacgc
cggcgcggcggcaaaggccgcgagcgcggcgaacacaagcgcgacgccggtgccgcagat
tccgacgacagcggcgaacatggcgacacgggcggcgatgcaattgccgaagacaccacc
gccgaagccgatttcacagctgaaaatgccgacgcctcgcctgaaacggccgggcacgaa
gacgtagccgccgatcacggcgaagcagaagcgtccgaagaagtttccggaagcgggccc
acatcgatcgccgccagcgttgaagccgatgtgatttccgaggccgctccgcagccggaa
tcggcctccgccgacgcaagcggcgaagcctcgtccagcgacaatgatcgcggcatgctg
gaagaggtccagtcctcgcatccggacgaccacgaagtcgaatcggtcggtgctgaggat
gcgctggaagaagtgcgcaaccgccgcaagccggtgcgccgccagtacaagatccaggaa
gtcatcaagcgccgccagatcctgctggtgcaggtcgtcaaggaagagcgcggcaacaag
ggcgccgctctcaccacctacctgtcgcttgccggccgctattcggtgctgatgcccaac
acggcgcgtggcggcggcatttcgcgcaagatcaccaacgcgcaggaccgcaagcggctg
aaggaagtcgtcgccgatctcgaagtgccgcagggcatgggcgtcatcctgcgcacggcc
ggcgaaagccgcaccaaggccgagatcaagcgcgactacgagtatctgatgcggctttgg
gaaaacgtccgcaatctgacgctgcaatccactgcccctgccctggtttacgaggaaggc
agcctgatcaagcgctcggtgcgcgacctctacaacaaggacatcgacgagatcctggtc
tccggcgaggaaggctatcgcgaagccaaggacttcatgcgcatgctgatgccgagccac
gccaaggtggttcagccgttccgcgacacgacgccgatcttcgtgcgcaacggcatcgag
gcgcaactcgaccgcatgctgcagccgcaggtgacgctgaagagcggcggctacatcatc
atcaaccagaccgaggcgctggttgccatcgacgtcaattcgggccgctccaccaaggag
cactcgatcgaggacaccgctctccacaccaacctcgaagcggccgaggaagtcgcccgc
cagctcaggctgcgcgacctcgccggcctgatcgtcatcgacttcatcgacatggaggag
aaccgcaacaaccgctccgtcgagaagcggctgaaggatcacctcaagaacgaccgcgcc
cgcatccaggtcggccgcatctcgcatttcggcctgatggaaatgtcgcgccagcgcatc
cgcgccagcgtgctggaatcgaccatgaagccctgcccgcattgcggcggtaccggccat
gtgcgctccgattcctcggtggcgctgatggtggttcgggcgatcgaggagttcctgctc
aaggattcgcgcagccacatcacggtgcggacccctgcggcgacggcgctctacgtgctc
aaccacaagcgcggcacgctggtcgaactcgaaagccgcttcggcctgaccatcacgatc
gaggccgacgacgcggtcggcgcgcagcactatgcgatcttccgcggagcactggcggaa
aagccggagggcttcgtcgaagtgcgcagcctgccgacctatgtcgagccggaagagccc
gaagacgaaatcgtcgtcgaggaggaggacgagacacctgcccaggtggaacagccgcgc
catccccagcagcaacagccgaggtccggcgaggacggcgaaggccgcgatcgcaagcgc
cgcaagcgccgcaggcggcgtggcggcaaggatcgcgatcgcgaacatggtgatcgcgag
cacgccgctcccgcggaaggtgcaatcgtcgcggcgccggcggatatcgacgccgccgtc
gcaacggatgaaatcaccgccgagggcggcgaagcgccggtcgtcgccgtcgcagtggac
gcctcggacgacggtcagggcaagaagcgccggcgcggcaagcgcggcggcaagcgcaat
cgccgtgaggacggcgaggacggagccgaagcgggcgagacggccgatggcgtcgaagcc
gatgcggcggcaagcgaagccgtggccatcgagtccgtggccgagactgtagcggcggta
tcggcggaagagcttccctctgccgccaatgacgacgtgccgagcgctgagaagcctaag
aagaagcgcgcatcgaggtccaagaaggccgcagcagaagttgccgccgagacggtagcc
gaagcaccagccgaggatgctgcgccggccgaggcggcgacgcctgcgcccgtgccggcc
gccccggctgccgaggaggaagcgcctgccagtgcacgcccgacccgccgcaagcccgtc
gcaatcgatgctccggtcgtgcccgtggtctcgtcgaccgtcgtcgaagaggccaaggtc
gaggaaaagccgaagcgcgccggctggtggcagcggaaaggctttttctaa
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