Methyloceanibacter caenitepidi: GL4_1742
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Entry
GL4_1742 CDS
T03636
Name
(GenBank) cytoplasmic axial filament protein CafA and ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcg
Methyloceanibacter caenitepidi
Pathway
mcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GL4_1742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcg03019
]
GL4_1742
03009 Ribosome biogenesis [BR:
mcg03009
]
GL4_1742
Enzymes [BR:
mcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GL4_1742
Messenger RNA biogenesis [BR:
mcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GL4_1742
Ribosome biogenesis [BR:
mcg03009
]
Prokaryotic type
rRNA processing factors
GL4_1742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAQ17196
UniProt:
A0A0A8K311
LinkDB
All DBs
Position
complement(1821682..1824564)
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AA seq
960 aa
AA seq
DB search
MANKMLIDAAHPEETRVVVKGNRVEEFDYESASKKQLRGNIYLAKVTRVEPSLQAAFVDY
GGNRHGFLAFTEIHPDYYQIPVADRQALLEEEAAEQSRASAEEAAEDDAASSGGRRRGRR
RRGRGRGDSRRDERKQETAADDDTSSLNALPIATFELDDDDEVDTTPRDERDDDDGSDIQ
LEASDLVHEVSEPAEAPAEEDDAEAAASNDGPQSEDASDDDVVEARKPESSDDDADAEDH
ADDDSDHSEDSDDDADDDESDDDDDSDDDDPDDDERGDRRKSAKDRVESVGSEDALEELP
ERARRRRGRPYKIQEVIRRRQIILVQVVKEERGNKGAALTTYLSLAGRYTVLMPNTARGG
GISRKITQPTDRKRLREIAGELEVPEGMGLIIRTAGAQRTKTEIKRDYDYLLRLWETVRD
LTLGSTAPALVYEEGSLIKRSIRDLYNKDIDEVLVAGDDAYREAKDFMRMLMPSHAKNVK
PYKEPEPIFIRYQVERQLAAMFSPQVTLRSGGYIVINQTEALVSVDVNSGKATREHNIED
TALKTNMEAAEEIARQLRLRDLAGLIVIDFIDMDERRNNRQVERRLKDALKNDRARIQVG
RISAFGLLEMSRQRLRTGVLEGSTNACAMCQGTGIVRSVESVALDILRSIEDRLITDGVV
PLSATTAVDVALYILNQKRAHLKDIEARYEVPITVEADKDLHIPQFVIERSTEGSLASGD
SAVVQMDWAHHREEASQAEDGDGESGKRRSRRRRGRGRGRGEGDSDTESQTAEASSSDEE
AAAGGSDNEAADGDSEQQPRKSRRRGRRGGRRGRGRGQRNASDQSPDQQDAQSDDAVASS
DTGSADSETSDTTSEPVSMHNAETQDNRDRADTPADNAPSEDTPVREVSVSEYVAETTAE
EQDDDDAEQSSEPASRSPEPALSIASSRDEPVEPDPKPEIRIESEGKEPERQRKGWWSRG
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgcttatcgatgcggcgcatccggaggagacccgggtcgtcgtaaag
ggaaatcgtgtcgaggaatttgattacgaatccgcaagtaaaaaacagctaagaggcaat
atctacctcgcaaaagtcacgcgggtagagccgtctctccaggccgctttcgtcgattac
ggcggaaaccggcacggcttcttggcctttactgaaattcatcccgattattatcagatc
ccggttgcggatcgccaagcgctcctcgaagaggaggccgccgagcaaagccgtgcctcc
gccgaggaggcggcagaggacgatgccgcgtcgagcggcggacgccggcgcggacgccgg
cgccgtgggcgcggccgcggagactcccgcagggacgaacgcaagcaggagaccgcggcg
gacgacgacacgtcctccctgaacgcgctgccgattgcgaccttcgaactcgacgatgac
gacgaggtcgatacgacgccgcgtgacgaacgcgacgacgatgacggctccgatatccag
ctcgaggcctccgatctggtccacgaagtgtccgagcccgcagaggcgccggccgaggaa
gacgatgccgaggctgcagcctcgaatgacgggccgcaaagcgaagatgcctctgacgac
gatgttgtcgaggcgcgtaagccggagtcctcggacgacgatgccgacgccgaagaccat
gccgatgacgacagcgatcacagcgaagactcggacgacgatgccgacgacgacgagtcc
gacgatgacgacgactccgacgatgacgacccggacgacgacgagcgtggcgaccgccgt
aagtcggccaaggatcgcgtcgagtccgtgggttcggaggatgcgctcgaggaattgcct
gagcgcgcccgacgccgtcgcggccgcccctacaagatccaagaggtcattcgccggcgt
cagatcattctggttcaggtggtgaaggaagagcgcggcaataagggcgcggcactcacg
acctacctttccctcgcgggccgttacacggttctgatgccgaacaccgcgcgcggcggc
ggtatttcccgcaagatcacccaaccgacggaccgcaagcgtctgcgcgagatcgcgggc
gagctcgaggtgccggaaggcatggggctgatcattcgcaccgccggcgctcagcggacc
aagaccgaaatcaaacgcgactacgactatctactgcgcttgtgggagaccgttcgcgac
ctcaccctgggctcgacggcccctgccctcgtctacgaggaaggcagcctgatcaagcgc
tcgatccgcgatctttacaacaaggacatcgacgaggtcctggttgccggcgacgacgcc
taccgcgaggccaaggacttcatgcgcatgctcatgccgagccatgccaagaatgtgaag
ccctacaaggaaccggaaccgatcttcattcggtatcaggtcgagcggcaattggcggcg
atgttctctccgcaagtgacgcttaggtcaggtggctacatcgtcatcaatcagacggaa
gctctcgtctccgtcgatgtgaactcgggcaaggctacgcgcgagcacaatatcgaagac
accgcgctcaagaccaatatggaagccgccgaagagatcgcgcggcagctgcgcctgcgc
gaccttgccggcctcatcgtgatcgacttcatcgacatggacgagcgccgcaacaacagg
caagtcgagcgtcgcttgaaagacgcactgaagaacgaccgggcgcgtatccaggttgga
cgcatcagcgccttcggcctcttggaaatgtcgcgtcagcgcctgcggaccggcgttctc
gaaggctcgaccaatgcctgcgccatgtgccagggcaccggtatcgtacgctcggtggag
tcggtcgcgctcgacattctgcggtcgatcgaagaccgcctcatcaccgacggagtggtg
ccgctcagcgccacgaccgcggtcgatgtcgcgctctacattctcaatcagaagcgtgcg
cacctgaaggatatcgaggcgcgctacgaggtacccataaccgttgaggccgataaggac
ctgcatatcccgcagttcgtcatcgagcgttccacggaaggcagtctggcgtccggcgac
agtgccgtcgtccaaatggattgggcgcatcaccgcgaagaggcttcgcaagccgaagac
ggcgacggggagtccggcaagcggcgttcgcgacggcggcggggccgtggtcgtggccgc
ggcgaaggcgattccgacaccgagagccagacggccgaggcctcgtcctccgacgaggaa
gccgcggccggcggttcggacaacgaagcggccgacggcgattccgagcagcaaccccgc
aaatcacgccgcagagggcgtcgtggcggccgacgcggtcgcgggcgcggtcagcgcaat
gcctcggatcagtcgcccgatcagcaggacgcgcaaagtgacgacgctgttgcgagcagc
gatacgggctccgcggactccgagacgagtgacacgacctccgagcctgtttccatgcac
aatgccgaaacccaagacaatcgggatcgagccgacacaccggcggacaacgcgccttcc
gaggacacgccggttcgcgaggtctcggtcagcgagtacgtcgccgagaccacggccgag
gagcaggacgacgatgacgccgaacaatcatccgagcctgcgtcccgcagcccggagccc
gcgctcagcatcgcctcgtcacgggacgaacctgtcgagccggacccgaagccggaaatt
cgcatcgagagcgaaggcaaggagccggagcgccagcgtaagggctggtggtcgcgcggt
tag
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