Methylorubrum extorquens DM4: METDI4658
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Entry
METDI4658 CDS
T00947
Name
(GenBank) putative ribonuclease E or G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METDI4658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdi03019
]
METDI4658
03009 Ribosome biogenesis [BR:
mdi03009
]
METDI4658
Enzymes [BR:
mdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
METDI4658
Messenger RNA biogenesis [BR:
mdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
METDI4658
Ribosome biogenesis [BR:
mdi03009
]
Prokaryotic type
rRNA processing factors
METDI4658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAX26280
UniProt:
C7CGG8
LinkDB
All DBs
Position
complement(4536403..4539564)
Genome browser
AA seq
1053 aa
AA seq
DB search
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGSRPDDTVKSQEAASDAGSEDAAIPGEGQAADAPAPEAIEAVRSALVEGRIEERNDE
RSEGDAASAPVEAGGDASASLPEAALEPGTPAGEAPADEAAAVEPSDIAAISEAPNPPVE
AAESSEAAPVDTNSAEAETVEPQPVAASAPVSQAEIEEADADSDEDAEADDSDDEDSEDD
ESDDEDEDDDSEDDDSDDEDDDEESEDGDEESEDGEPRVAQVGGSGDALAELPERPRAYR
RHYKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITS
AADRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAP
ALVYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPI
FARYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLE
AAEEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLL
EMSRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRT
ETALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAV
AISPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRRRRRRRG
GRTAGEGEARARDEDGTDSEDGAEDGAEEGDDAPDSEPEAAEAALGAASEPDEAASDADA
NGEDANGRRRRRGRRGGRGRGRTERNGRSDSEQDSDADEVRATEESEAHPEETASDTLPV
GPEEPFNDADVSTVSLAAENGAAAEPPPVVPAPELEPIQVESFAEAATEAAAPSPANAEP
APEPVAVVLTPPDPNRPKRAGWWSRTKAALSGE
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gtccaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgaccgcctcgccctgatcgaggccgaggcgcgcgaggaagaggag
caccgcgagcgcgaggagcgccgtccgccgcggggccgccgctcgcgcgggcgccgggcc
gaggcccgcggctcgcgccccgacgacacggtgaagtcgcaagaggcagcgtccgacgca
gggtccgaggacgctgcgatccccggtgagggccaggccgccgacgcacccgcgccggag
gcgatcgaggcggtgcggtccgctctcgtcgaaggacggatcgaagaacggaacgacgag
cggagcgagggcgacgcggcgtccgcaccggtcgaggccggcggcgatgcctccgcgagc
ctgcccgaggcggctttggagcccggcacccccgccggtgaggcgccggctgacgaagcc
gccgcggtcgagccctccgacatcgccgcgatctccgaggcgccgaacccgcccgtcgag
gccgcggaatcgtccgaagccgcacccgtcgataccaattccgccgaggcagagacggtc
gagccgcagcccgtcgccgccagcgcgcccgtctcccaggccgagatcgaggaagccgac
gcggattccgacgaggacgccgaggccgacgattcggacgacgaggactcggaggatgac
gagtccgacgacgaggatgaggacgacgattccgaggacgacgattcggacgacgaggac
gacgacgaggagtccgaggacggcgacgaggagtccgaggacggcgagccgcgcgtcgcg
caggtcggtggctcgggcgatgcgctcgccgagctccccgagcgtccgcgcgcctatcgc
cgccactacaagatccaggaggtgatcaagcgccgccagatcatcctcgtccaggtcgtc
aaggaagagcgcggcaccaagggcgcggcgctcaccacctacctgtcgctggccggccgc
tactcggtgctgatgccgaacaccggacggggcggcggcatctcgcgcaagatcacctcg
gccgccgaccgcaagcgtctcaaggaagtggtcgccgacctcgacgtgccggacgggatg
gggatcatcctgcgcacggccggcgcctcgcgcaccaagcccgagatcaagcgcgacttc
gagtacctgatgcgcctgtgggagagcgtgcgcgagctgacgctgtcctcgaccgccccg
gcgctcgtctacgaggagggctcgctgatcaagcgggcgatccgcgacctctacaacaag
gatctcgacgaggttctggtctccggcgaggacgcctaccgcgaggccaaagacttcatg
cggatgctgatgcccggccagtccaaggtcgtgaagccctaccgcgatccgacgccgatc
ttcgcccgctacggcgtcgagcagcagctcgacgcgatgttctcgacccacgtcgcgctg
cgctccggcggctacctcgtcatcaacccgaccgaggcgctggtctcgatcgacgtgaac
tcgggccgcgcgacccgcgagcacgacatcgaggacaccgcgctcaagacgaacctcgag
gcggccgaagaggtcgcccggcaggtgcgcttgcgcgatctcgccggcctcgtcgtgatc
gacttcatcgacatggaggagaagcgcaacaaccgggcggtggagaagcggctcaacgag
gcgctcaagaacgaccgggcgcgcatccaggtcgggcggatctcgcccttcggcctgctt
gagatgagccgccagcgcatccgcaccggcgtgctcgaatcctcctcgatcccctgcgcc
cattgcggcggctcgggcttcgtgcgggcgacctcctcggtggcgctgcacatcctgcgc
tcgatcgaggaggtgctgctcaagtcggcgagccacaacgtcgtgctgcgcacccgcacc
gagacggcgctctacatcctcaaccagaagcgggcgcatctcttcgatctcgagcagcgc
ttctcggtcacgatcaccatttccgccgacgaccggctcgtcgcgacctccgccttccag
ctcgaacgcggtgagccggcggtgaagcacgagggcccggtgacgggcgtgcgcgccgtg
gcgatctcgccggtctacgaggccgaggagttcgaggacgaggcggtcgagagccaggag
accgaagaggtcgagaccgaggtcgaagcggaggccgagggcgcgtccgaggagcgcccg
gccgccgatgcgtccgaggagggcggtggccgccgccgccgtcgccgtcgccgtcgcggt
ggtcgcaccgccggtgagggcgaggcccgcgcgcgggacgaggacgggaccgacagcgag
gacggggccgaggacggcgcggaggagggcgacgatgcgcccgattccgagccggaggcc
gccgaggcggctctcggcgctgcgtccgagccggacgaggccgcgtcggacgccgacgcc
aacggcgaggacgccaacggacgccgccgtcgccgcggacgccggggcggtcgcggccgc
ggccggaccgagcgcaatggccgttcggattccgagcaggattcagatgccgacgaggtg
cgggccacggaggagtccgaggcgcatcccgaggagaccgcctccgataccctgccggtc
ggccccgaggagccgttcaacgatgccgatgtgagcaccgtctcgctcgccgccgagaac
ggcgccgcggccgagccgccgccggtcgtccccgcgccggagctcgagccgatccaggtc
gagtccttcgccgaggccgcgaccgaagcggcagcgcccagcccggccaacgctgagccc
gcgccggagcccgtcgcggtggtgctgaccccgccggacccgaaccgtcccaagcgggcc
ggctggtggtcgcgcaccaaggcggcgctgtcgggggagtga
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