Methylorubrum extorquens AM1: Mex_1p3916
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Entry
Mex_1p3916 CDS
T00921
Name
(GenBank) putative ribonuclease E or G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mea
Methylorubrum extorquens AM1
Pathway
mea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mex_1p3916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mea03019
]
Mex_1p3916
03009 Ribosome biogenesis [BR:
mea03009
]
Mex_1p3916
Enzymes [BR:
mea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mex_1p3916
Messenger RNA biogenesis [BR:
mea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mex_1p3916
Ribosome biogenesis [BR:
mea03009
]
Prokaryotic type
rRNA processing factors
Mex_1p3916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACS41600
UniProt:
C5B0L3
LinkDB
All DBs
Position
complement(4030832..4033996)
Genome browser
AA seq
1054 aa
AA seq
DB search
MANNKMLIDAMHPEETRVVTVQGSRVEEFDFEAANRRPLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFNEIHPDYYQIPMADRLALIEAEAREEEEHREREERRPPRGRRSRGRRA
EARGSRPDDTVKSQEAVSDAGSEDAAIPGEGQAADAPAPEAIEAVRSALVEGRIEERNDE
RSEGDAASAPVEAGGDASASLPEAALEPGTPTGEAPADEAAAVEPSDIAAISEAPNPPVE
AAESSESAAMEAAPAEADSAEAETVEPQPVAATAPVSQAEIEEADADSDEDAETDDSDDE
DSEDDESDDEDEDDDSEDDDSDDEDDDEESEDGEPRVAQVGGSGDALAELPERPRAYRRH
YKIQEVIKRRQIILVQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAA
DRKRLKEVVADLDVPDGMGIILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSTAPAL
VYEEGSLIKRAIRDLYNKDLDEVLVSGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFA
RYGVEQQLDAMFSTHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAA
EEVARQVRLRDLAGLVVIDFIDMEEKRNNRAVEKRLNEALKNDRARIQVGRISPFGLLEM
SRQRIRTGVLESSSIPCAHCGGSGFVRATSSVALHILRSIEEVLLKSASHNVVLRTRTET
ALYILNQKRAHLFDLEQRFSVTITISADDRLVATSAFQLERGEPAVKHEGPVTGVRAVAI
SPVYEAEEFEDEAVESQETEEVETEVEAEAEGASEERPAADASEEGGGRRRRRRRRRGGR
ASGEGEARARDEDGTDSEDGAEDGAEDGDDAPDSEPEAVEAALGAAAEPDETASDADANG
EDANGRRRRRGRRGGRGRGRTERNGRSDSEQDADADETGAVRASEDSEAHPEETASDTLP
VGPEEPFNDADVSTVSLAAENGAAAEPPPVVPAPELEPIQVESFAEAATEAAAPSPANAE
PAPEPVAVVLTPPDPNRPKRAGWWSRTKAALSGE
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacaagatgctcatcgatgcgatgcatccggaggagacccgggtcgtcaca
gtccaaggctcgcgggtcgaggaatttgatttcgaggcggccaaccgccggcctctgagg
ggcaacatctatctcgccaaggtcacccgcgtggagccctcgctccaggcggccttcgtc
gagtacggcggcaaccgccacggcttcctcgccttcaacgagatccaccccgactactac
cagatcccgatggccgaccgcctcgcgctgatcgaggccgaggcgcgcgaggaagaggag
caccgcgagcgcgaggagcgccgtccgccgcggggccgccgctcgcgcgggcgccgggcc
gaggcccgcggttcgcgccccgacgacacggtgaagtcgcaagaggcggtttccgacgca
ggctccgaggacgctgcgatccccggtgagggccaggccgccgacgcgcccgcgccggag
gcgatcgaggcggtgcgctccgctctcgtcgaagggcggatcgaagaacggaacgacgag
cggagcgagggcgacgcggcgtccgcaccggtcgaggccggcggcgatgcctccgcgagc
ctgcccgaggcagcgctggagcccggcacccccaccggcgaggcgccggctgacgaagcc
gccgcggtcgagccctcagacatcgccgcgatctccgaggcgccgaacccgcccgtcgag
gccgcggaatcgtccgagtccgcggccatggaggctgctcccgccgaggccgattccgct
gaggcggagacggtcgagccgcagcccgtcgccgccaccgcgcccgtctcccaggccgag
atcgaggaagccgacgcggattccgacgaggacgccgagaccgacgattcggacgacgag
gactcggaggatgacgagtccgacgacgaggatgaggacgacgattccgaggacgacgat
tcggacgacgaggacgacgacgaggagtccgaggacggcgagccgcgcgtcgctcaggtc
ggtggctcgggcgatgcgctcgccgagctccccgagcgtccgcgcgcctatcgccgccac
tacaagatccaggaggtgatcaagcgccgccagatcatcctcgtccaagtcgtcaaggaa
gagcgcggcaccaagggcgcggcgctcaccacctacctgtcgctggccggccgctactca
gtgctgatgcccaacaccggacggggcggcggcatctcgcgcaagatcacctcggccgcc
gaccgcaagcgcctcaaggaagtggtcgccgacctcgacgtgccggatgggatggggatc
atcctgcgcacggccggcgcctcgcgcaccaagcccgagatcaagcgcgacttcgagtac
ctgatgcgcctgtgggagagcgtgcgcgagctgacgctgtcctcgaccgccccggcgctc
gtctacgaggagggctcgctgatcaagcgggcgatccgcgacctctacaacaaggatctc
gacgaggttctggtctccggcgaggacgcctaccgcgaggccaaggacttcatgcggatg
ctgatgcccggccagtctaaggtcgtgaagccctaccgcgatccgacgccgatcttcgcc
cgctacggcgtcgagcagcagctcgacgcgatgttctcgacccacgtcgccctgcgctcc
ggcggctacctcgtcatcaacccgaccgaggcgctggtctcgatcgacgtgaactccggc
cgcgcgacccgcgagcacgacatcgaggacaccgcgctcaagacgaacctcgaggcggcc
gaagaggtcgcccggcaggtgcgcctgcgcgatctggccggcctcgtcgtgatcgacttc
atcgacatggaggagaagcgcaacaaccgggcggtggagaagcgcctgaacgaggcgctc
aagaacgaccgggcgcgcatccaggtcgggcggatctcgcccttcggcctgcttgagatg
agccgccagcgcatccgcaccggcgtgctcgaatcctcctcgatcccctgcgcccattgc
ggcggctcgggcttcgtgcgggcgacctcctcggtggcgctgcacatcctgcgctcgatc
gaggaggtgctgctcaagtcggcgagccacaacgtcgtgctgcgcacccgcaccgagacg
gcgctctacatcctcaaccagaagcgggcgcatctcttcgatctcgagcagcgcttctcg
gtcacgatcaccatttccgccgacgaccggctcgtggcgacctccgccttccagctcgaa
cgcggtgagccggcggtgaagcacgagggcccggtgacgggcgtgcgcgccgtggcgatc
tcgccggtctacgaggccgaggagttcgaggacgaggcggtcgagagccaggagaccgaa
gaggtcgagaccgaggtcgaagcggaggccgagggcgcgtccgaggagcgccccgccgcc
gacgcgtccgaggagggcggtggccgccgtcgccgtcgccgtcgccgtcgcggtggccgc
gcctccggtgagggcgaggcccgcgcgcgggacgaggacgggaccgacagcgaggacggg
gccgaggacggcgcggaggacggcgacgatgcgcccgattccgagccggaggccgtcgag
gcggctctcggcgccgcggccgagccggacgagaccgcatcggacgccgacgccaacggc
gaggacgccaatggacgccgccgtcgccgcggacgccggggcggtcgcggccgcggccgg
accgagcgcaatggccgttcggattccgagcaggatgccgatgccgacgagaccggcgcg
gtgcgggcttcggaggattccgaggcgcatcccgaggagaccgcctccgataccctgccg
gtcggccccgaggagccgttcaacgatgccgatgtgagcaccgtctcgctcgccgccgag
aacggcgccgcggctgagccgccgccggtcgtccccgcgccggagctcgagccgatccag
gtcgagtccttcgccgaggccgcgaccgaagcggcagcgcccagcccggccaacgccgag
cccgcgccggagcccgtcgcggtggtgctgacgccgccggacccgaaccgtcccaagcgg
gccggctggtggtcgcgcaccaaggcggcgctgtcgggggagtga
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