Marinomonas mediterranea: Marme_1999
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Entry
Marme_1999 CDS
T01449
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Marme_1999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mme03019
]
Marme_1999
03009 Ribosome biogenesis [BR:
mme03009
]
Marme_1999
Enzymes [BR:
mme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Marme_1999
Messenger RNA biogenesis [BR:
mme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Marme_1999
Ribosome biogenesis [BR:
mme03009
]
Prokaryotic type
rRNA processing factors
Marme_1999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADZ91247
UniProt:
F2K3A5
LinkDB
All DBs
Position
complement(2180262..2183549)
Genome browser
AA seq
1095 aa
AA seq
DB search
MIRMLINATQQEELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISKTYFSKKSNSDGRLNIKDVLTEGQEVIVQVDKEERGNKGAALTTFV
SLAGRYLVLMPNNPRAGGISRRIDGDDRTQLKEAMSGLSTPENGGLIVRTAGVGRSTEEL
QWDLDYLDTLWSSITKAASEKPAPFLIYQESNIVIRAIRDYLRDDIGEVLIDEKGAYQDA
INFVMQVMPQFKSRIKQYSDTTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVS
IDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPLKNQKEVEN
RMKQALEADRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLAL
SVLRLIEEECAKERTAQIRAILPVSVATFLLNEKRTNIAKIEKRNDVHIILVPNPHMETP
HFTVERIRDDNAVITQDDSSYTLVETPDEAPYEPRQAVEQARPQAAVTSIAPKSPAPAPT
PEPKKVEKTGLLTRIFRALFGATEEAETKKDSKPSTTTKSRSNQGTQGDRNKRSKPQRTN
KHQKRDQGDERKQEKPRSTRKTRREQAEAQVKTHAPQAKKKAPQSEERSETKRKATVEVA
PEKKVPEVKERKRTRNENKRRNGKLRDEAELAKQENAKQEADAKEAAQIEAQEGQRSDAT
STDSASTKERKPRRSRRSRKSPRGDAAPTQAEATQPATEETSVATETPSSVEVVESKLEA
NTAKKELETTSIPKTAAKEETSSNEEAPQTTPIVDAEPAKETASDDTTKNAVENSAQPAS
EPVAESEPVETTDPESTSSEAANAEDTSVKTEQEEPVMEAAQTETAPTPDTVEVSSTNEN
QQTASNETSSDNEPAVSTSEATTTKETSTEEANTEETDAKESSTQESILEKADSEESSTQ
ESILEKTDSEESSSEQNNSVEAVTETPDSKPEAQPTPEPTADQPEPTTQRARAPRRGRGK
PAPKVTEKRASVELPEAILKQQEEARKALEEKRAASSERRGRRQGRVKNDPRLSRGEDVQ
ATPPESASSGTETAE
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgattagaatgctaataaacgcgacgcaacaagaagaattgcgcgttgcactagtggat
ggccagcgcctttatgatttagatatagagtccgggtcaagagaacagaaaaaagcaaat
atctacaaagggaaaatcacacgcattgagcctagcctcgaagcggcgttcgttgactac
ggcgcagaacgacacggattcctccctcttaaagaaatttctaaaacttacttttcaaaa
aaatctaactctgacggacgcctaaacatcaaagatgttttaaccgaaggtcaggaagtc
atagttcaagtagacaaagaagagcgtggaaacaaaggtgcagcactgacgacattcgta
agtttggcagggcgatacttagtactaatgccaaacaaccctcgcgcaggcggcatttct
cgccgaatcgatggtgatgatcgtacgcaattaaaagaagcaatgtccggcctttcaacc
cctgaaaatggcggcttaattgttcgtacagcgggtgtaggtcgctcaactgaagaacta
caatgggacttagactatctcgatacattgtggagctcgatcacaaaagcagcttcagaa
aagccagctccattcttgatctatcaagaaagtaacatcgttatcagagcaattcgtgac
tacttgcgcgatgacattggcgaagtattaatcgacgaaaaaggcgcctaccaagacgca
atcaacttcgttatgcaagttatgccacagtttaagagtcgcattaagcaatactctgat
accactccgctgttcaatcgtttccaaatcgaaacgcaaatcgaaaccgctttccaacgt
gaagttcgactaccttcaggcggctccatcgtaattgatccgactgaagcgctcgtatcg
attgatatcaactccgcacgtgcaacaaaaggcggagatatcgaagagaccgcactgcaa
accaacttagaagccgctgacgaaattgcacgtcaattgcgcctacgagacataggtgga
ctggttgtcattgattttatcgatatgacaccactaaaaaaccagaaagaagttgaaaac
cgcatgaaacaagcacttgaagcggaccgcgctcgagtgcaactaggccgtatctcgcgc
tttggacttctagaaatgtcccgccaacgcttgcgcccttctctaggcgaaacaagcggc
attgtttgcccacgctgtaatggacaaggctttatccgtgacgttgaatcactagccctg
tccgtacttcgccttattgaggaagagtgtgcgaaagaacgcaccgctcaaatacgcgca
atattaccggtctctgttgcgactttcttgttaaacgaaaagcgtacaaacatcgcgaaa
atcgaaaaacgcaatgacgtgcacatcattttggtgccaaatccacacatggaaacaccg
cacttcactgtggagagaattcgcgacgacaacgccgtaatcactcaggacgacagtagc
tacacccttgtagaaactcccgatgaagcaccttacgagcctcgccaggcggttgagcaa
gctcgaccacaagcggcggtaacaagtattgctcccaagtcccctgctccagcccccact
ccagaacctaaaaaagttgaaaaaactggattgctaacacgcattttccgcgcactgttt
ggtgcaacggaagaagcggaaaccaaaaaggacagcaaaccatccacaacaactaaaagc
cgttctaaccaaggtacgcaaggagatagaaacaaacgctccaaaccacaacgtacgaac
aaacaccaaaagcgcgatcaaggtgacgaacgcaaacaagaaaaaccgcgctcgacacgc
aaaacccgtcgcgagcaagcggaagcgcaggtaaaaactcacgctcctcaagcgaagaaa
aaagcgccgcaatccgaagagcgcagtgaaaccaagcgtaaagcgaccgttgaagttgca
cctgagaagaaagttcccgaagtaaaagagcgcaaacgtacacgcaatgaaaacaagcgt
cgaaacggtaaacttcgtgatgaagcagaactagcaaaacaagaaaacgcaaaacaagaa
gctgatgcgaaagaagcagctcaaattgaagctcaagaaggacaacgttccgacgcgacg
tctacagactcagcttcaactaaagaaagaaaaccgcgcagatcaagacgctctcgtaaa
tcaccacgaggtgatgcagcaccgacgcaagcagaagctactcagccagcaactgaagaa
acctctgtcgctactgaaacaccttcttctgttgaagttgtagagagcaagctagaagcg
aacactgcgaaaaaggaacttgagactacctcaattcctaaaacagctgcgaaagaagaa
acgtcatcaaacgaagaagcacctcaaactacgccaatcgttgacgcggaacctgcaaag
gaaaccgctagtgatgacaccactaaaaatgcagttgagaatagcgcacaacctgcaagc
gaacctgttgctgaaagtgaaccagtagagactacagatcctgaaagcacctcttcagaa
gcggcgaatgcagaagacacaagtgtcaaaactgaacaggaagagcctgtaatggaagca
gctcaaactgaaactgcacccactccagacactgtcgaagtaagttcgacaaacgagaat
cagcagacagcctctaacgagacctcttctgataacgaacccgctgtatctacctccgag
gcaacaacgacaaaagagactagtactgaagaggctaacaccgaagaaactgatgccaaa
gagtctagtactcaggaaagcattctagagaaagcggattccgaagagtctagtactcag
gaaagcattctagagaaaacggattccgaagagagctcttcagagcaaaacaactcagtt
gaagcagtgacagagacgcctgatagcaagcccgaagcacaaccaacgccagagcccact
gccgatcagccagagcctacgactcaacgagcacgcgccccaagacgcggtcgcggcaag
cctgctccgaaagtgacagaaaaaagagcatcagtagagctacctgaagcaatactcaaa
caacaagaagaagctcgaaaagcgttggaagaaaaacgagcagcgtcgagtgaacgtcgc
ggaagacgtcaaggacgagtaaaaaatgatccgagactatcacgaggagaagacgtacaa
gcaactcctccagaaagcgctagctccggaacagagaccgctgaataa
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